Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0898300-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:39052287:39055586:-1 gene:Os01g0898300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Oryza sativa short postembryonic roots 1 description:Mitochondrial protein, Root development and iron homeostasis (Os01t0898300-01);Hypothetical conserved gene. (Os01t0898300-02)
Sequence

GCACTTTATGTGGCCTTGGAGGAGTGCCTGGTGCAATTGACAGAAAAGGTTGGTGATGTT
GGGCCTGTTCTTGACATGGTGGGAGTAATGCTTGAGAATCTCTCTTGTACTGCCACCATT
GCCAGAACAACAATTTCATCAGTTTTCCGCACAGTGCAAATAGCAGCTTCCATCCACAAG
TCATTGTACAACCAGAAGGCATTTCCTGAAGCTTTGTTTCATCAGCTTCTCTTAGCAATG
ATGCACCCAGACAAAAAGACAAGGGTTGGTTCACATCGTGTCCTATCCACCATTATTGCA
CCTTCACTTCTATGCCCATGGTCAGGCATAAGTTTTCCTATCCCTGTGAAGGGCAATGAT
TCACAGAGCATTACTTTGTTGGCTCTTTCTGCCTTTTCTTCTGAGGCCGTAATGGATGAA
GTCCGGATCAAAAGCAGGACCCATGAACAGTTACAAAACAATGTAAAACCAGAAACTGTA
GTTGGCTCTGAGAACGGATACACACATACAGAACCAAATTCAAGGAAGAGCCCTGGTCTT
GGAATTCCATTGAAAGATGAAAATCTTAAGTTCATGAAGCTGAACAGTAGCCAACTTGTT
CTCCTCCTTTCATCAATTTGGAGTCAAGCACCTCTAGAAGATAACTCACCAGCAAATTTT
GAAGCAATGTGCCATACCTACAATATTGCTTTATTGTGTTCAATGACAAAGAGCTCTAGT
CACGCAGCATTAGTTCGATGTTTCCAGTTGGCCTTCTCTCTCAGGAGGATGTCCCTTAAC
CAAGAAAATGGTTTGCAGCCATCACGTAGGAGGTGTTTGTATACAATGGCATCAGCAATG
CTGATTTTTTCAGCAAAAGTTGCTGATATTCCTCAGACAATTCCTCTTGTGAAAGCAGCA
GTTCCAGAGAAAATGGTCGACCCTCATCTTTGCCTGATTGATGATTGCAGACTCGTTATT
AGTTCACCACAGTCATCTAACAGTGGGATAGTTTATGGTTCTGAGGAAGATGAAAGTGAT
GCACGCAATTTTCTTTCTTGTGTAAATAAAAATGATACACAGTTAAAAGAAATTGTGATA
TCCCACTTCAAGGAGAAGTTTGAAAATCTATCAGAGAAGTTTAATGGTATAGAAGAGCAG
CTTCTTCAGGAGTTTTCCCTGGATGATTCATTCCCTCTCAGTGCTCCACTATTCATGGAA
ACACCACACTCTTGTTCGATGTACGCTGAAAAGGATGACCATTGTTTTGATGAGGAAGTC
ATTCCTTGTGAGATGGATGATGACGATGACATCGTTTTTGAACACAGTGGATCGCAATCT
GACAGGAAAACCTCTGGATCTATGGCTTCATCAGATGTTCTAAACGTCAATCAACTAATA
GAATCGGTTCATGAGACAGCAAGGCAGGTTGCTAATGCTCCAGTTTCTGCCAACCTTGTA
CCCTACGATCAAATGAAGAGCCAATGCGAAGCCCTAGTCATGGAGAAGCAACAGAAGATG
TCTGTTCTCCTGAGCTTCAAACACTCGAGGACCGATTCCCGTGGCTCGACTGCAGAAAAT
GGACTGGAAACAAACGAGTCATCTGCTCGGTCTGAGCCTGAGACGCAGTCGACGAGGAAG
GAGCGAATGCGACGCAGCGACTCGGCATCAAGCGAATCTGACCGGTCGTTCAGGCTGCCA
CCGGCAAGCCCATATGACAAGTTCATGAGAGCTGCTGGGCGATAG

Peptide Sequence

PEP ID

Os01t0898300-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:39052287:39055586:-1 gene:Os01g0898300 transcript:Os01t0898300-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Oryza sativa short postembryonic roots 1 description:Mitochondrial protein, Root development and iron homeostasis (Os01t0898300-01);Hypothetical conserved gene. (Os01t0898300-02)
Sequence

ALYVALEECLVQLTEKVGDVGPVLDMVGVMLENLSCTATIARTTISSVFRTVQIAASIHK
SLYNQKAFPEALFHQLLLAMMHPDKKTRVGSHRVLSTIIAPSLLCPWSGISFPIPVKGND
SQSITLLALSAFSSEAVMDEVRIKSRTHEQLQNNVKPETVVGSENGYTHTEPNSRKSPGL
GIPLKDENLKFMKLNSSQLVLLLSSIWSQAPLEDNSPANFEAMCHTYNIALLCSMTKSSS
HAALVRCFQLAFSLRRMSLNQENGLQPSRRRCLYTMASAMLIFSAKVADIPQTIPLVKAA
VPEKMVDPHLCLIDDCRLVISSPQSSNSGIVYGSEEDESDARNFLSCVNKNDTQLKEIVI
SHFKEKFENLSEKFNGIEEQLLQEFSLDDSFPLSAPLFMETPHSCSMYAEKDDHCFDEEV
IPCEMDDDDDIVFEHSGSQSDRKTSGSMASSDVLNVNQLIESVHETARQVANAPVSANLV
PYDQMKSQCEALVMEKQQKMSVLLSFKHSRTDSRGSTAENGLETNESSARSEPETQSTRK
ERMRRSDSASSESDRSFRLPPASPYDKFMRAAGR

Transcript Sequence

Transcript ID

Os01t0898300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:39052287:39055586:-1 gene:Os01g0898300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Oryza sativa short postembryonic roots 1 description:Mitochondrial protein, Root development and iron homeostasis (Os01t0898300-01);Hypothetical conserved gene. (Os01t0898300-02)
Sequence

GTGCACTTTATGTGGCCTTGGAGGAGTGCCTGGTGCAATTGACAGAAAAGGTTGGTGATG
TTGGGCCTGTTCTTGACATGGTGGGAGTAATGCTTGAGAATCTCTCTTGTACTGCCACCA
TTGCCAGAACAACAATTTCATCAGTTTTCCGCACAGTGCAAATAGCAGCTTCCATCCACA
AGTCATTGTACAACCAGAAGGCATTTCCTGAAGCTTTGTTTCATCAGCTTCTCTTAGCAA
TGATGCACCCAGACAAAAAGACAAGGGTTGGTTCACATCGTGTCCTATCCACCATTATTG
CACCTTCACTTCTATGCCCATGGTCAGGCATAAGTTTTCCTATCCCTGTGAAGGGCAATG
ATTCACAGAGCATTACTTTGTTGGCTCTTTCTGCCTTTTCTTCTGAGGCCGTAATGGATG
AAGTCCGGATCAAAAGCAGGACCCATGAACAGTTACAAAACAATGTAAAACCAGAAACTG
TAGTTGGCTCTGAGAACGGATACACACATACAGAACCAAATTCAAGGAAGAGCCCTGGTC
TTGGAATTCCATTGAAAGATGAAAATCTTAAGTTCATGAAGCTGAACAGTAGCCAACTTG
TTCTCCTCCTTTCATCAATTTGGAGTCAAGCACCTCTAGAAGATAACTCACCAGCAAATT
TTGAAGCAATGTGCCATACCTACAATATTGCTTTATTGTGTTCAATGACAAAGAGCTCTA
GTCACGCAGCATTAGTTCGATGTTTCCAGTTGGCCTTCTCTCTCAGGAGGATGTCCCTTA
ACCAAGAAAATGGTTTGCAGCCATCACGTAGGAGGTGTTTGTATACAATGGCATCAGCAA
TGCTGATTTTTTCAGCAAAAGTTGCTGATATTCCTCAGACAATTCCTCTTGTGAAAGCAG
CAGTTCCAGAGAAAATGGTCGACCCTCATCTTTGCCTGATTGATGATTGCAGACTCGTTA
TTAGTTCACCACAGTCATCTAACAGTGGGATAGTTTATGGTTCTGAGGAAGATGAAAGTG
ATGCACGCAATTTTCTTTCTTGTGTAAATAAAAATGATACACAGTTAAAAGAAATTGTGA
TATCCCACTTCAAGGAGAAGTTTGAAAATCTATCAGAGAAGTTTAATGGTATAGAAGAGC
AGCTTCTTCAGGAGTTTTCCCTGGATGATTCATTCCCTCTCAGTGCTCCACTATTCATGG
AAACACCACACTCTTGTTCGATGTACGCTGAAAAGGATGACCATTGTTTTGATGAGGAAG
TCATTCCTTGTGAGATGGATGATGACGATGACATCGTTTTTGAACACAGTGGATCGCAAT
CTGACAGGAAAACCTCTGGATCTATGGCTTCATCAGATGTTCTAAACGTCAATCAACTAA
TAGAATCGGTTCATGAGACAGCAAGGCAGGTTGCTAATGCTCCAGTTTCTGCCAACCTTG
TACCCTACGATCAAATGAAGAGCCAATGCGAAGCCCTAGTCATGGAGAAGCAACAGAAGA
TGTCTGTTCTCCTGAGCTTCAAACACTCGAGGACCGATTCCCGTGGCTCGACTGCAGAAA
ATGGACTGGAAACAAACGAGTCATCTGCTCGGTCTGAGCCTGAGACGCAGTCGACGAGGA
AGGAGCGAATGCGACGCAGCGACTCGGCATCAAGCGAATCTGACCGGTCGTTCAGGCTGC
CACCGGCAAGCCCATATGACAAGTTCATGAGAGCTGCTGGGCGATAGGCTGGTGCAATGC
AATGCGATGGCGCCAAGGATCTGATACTAGTTTTCAAGCCTGTATACAGAAATGTTTTTA
CAGATACAAGTCTTCTAAAGCTGTTTCTTTTCATTGTCGCCTTGTATTTTTTATTCTTCT
GAGTGTAAATTTCTCGAGAAGGTGTACAAATTTCTGTTACTGTTGTAGAGACCCAGAATA
AATAAAAGTATAGGCATTGGTGC