Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0896700-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:38968295:38971038:1 gene:Os01g0896700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPL5B description:Similar to 60S ribosomal protein L5. (Os01t0896700-00)
Sequence

ATGGGAGGGTTTGTCAAGACCCAGAAGACCCATGCCTACTTCAAGCGATTCCAAGTCAAG
TTCAAGAGACGGAGGCAGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAA
GATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTACAAACAAAGAT
ATCACAGCTCAAATTGTCTATGCTACCATTGCGGGTGATATCGTGATGGCTGCTGCCTAC
TCCCATGAGCTGCCTCGTTATGGTCTTGAAGTTGGTCTCACCAACTATGCGGCAGCTTAC
TGCACTGGCTTGCTTCTGGCTCGTCGTGTGCTCACGCTCCGTGGTTTGGACCAGGAGTAC
GAGGGCAATGTTGAGGCCACTGGGGAGGACTACTATGTTGAACCAGCTGATGAAAGGAGG
CCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGACAACCACTGGAAACCGTGTCTTT
GGTGCCCTCAAGGGAGCTTTGGATGGTGGTCTTGACATTCCTCACAGTGACAAGAGGTTT
GCTGGGTTCAAGAAGGACGAGAAGCAGCTTGATTCTGATATTCACCGCAAGTACATCTAC
GGTGGGCACGTGGCTGACTACATGAGGTCTATGGCTGAGGAGGAACCTGAGAAATTCCAA
GCCCACTTTAGTGAGTACCTCAAGAAGGGAATTGACGCTGATGGCATGGAATCACTGTAC
AAGAAGGTCCATGCTGCCATCCGCGCCGATCCTACCATGGCCAAATCGACCAAGAAGGAA
CCGGCTACCCACAAGAGATACAACCTCAAGAAGCTGACCTACGAGCAGAGGAAGGCCAGT
CTCGTCGAAAGATTGAATGCTCTCAACTCCTCCGCTGGTGCTGATGATGATGACGAGGAA
GAGGATGACGAGTGA

Peptide Sequence

PEP ID

Os01t0896700-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:38968295:38971038:1 gene:Os01g0896700 transcript:Os01t0896700-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPL5B description:Similar to 60S ribosomal protein L5. (Os01t0896700-00)
Sequence

MGGFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKD
ITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEY
EGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRF
AGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLY
KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEE
EDDE

Transcript Sequence

Transcript ID

Os01t0896700-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38968295:38971038:1 gene:Os01g0896700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPL5B description:Similar to 60S ribosomal protein L5. (Os01t0896700-00)
Sequence

ATTCCTTCTCCCACCTTCTCCCTTCTCCTCGCTCCTCCCCCTCCGCCGCCGCCGCAGCGG
AGCAGCAACAGCAGGCGAGCGACATGGGAGGGTTTGTCAAGACCCAGAAGACCCATGCCT
ACTTCAAGCGATTCCAAGTCAAGTTCAAGAGACGGAGGCAGGGCAAGACTGACTACAGGG
CCAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCG
TTGTGAGATTTACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCGGGTG
ATATCGTGATGGCTGCTGCCTACTCCCATGAGCTGCCTCGTTATGGTCTTGAAGTTGGTC
TCACCAACTATGCGGCAGCTTACTGCACTGGCTTGCTTCTGGCTCGTCGTGTGCTCACGC
TCCGTGGTTTGGACCAGGAGTACGAGGGCAATGTTGAGGCCACTGGGGAGGACTACTATG
TTGAACCAGCTGATGAAAGGAGGCCTTTCCGTGCTCTCTTGGATGTTGGCCTCATTAGGA
CAACCACTGGAAACCGTGTCTTTGGTGCCCTCAAGGGAGCTTTGGATGGTGGTCTTGACA
TTCCTCACAGTGACAAGAGGTTTGCTGGGTTCAAGAAGGACGAGAAGCAGCTTGATTCTG
ATATTCACCGCAAGTACATCTACGGTGGGCACGTGGCTGACTACATGAGGTCTATGGCTG
AGGAGGAACCTGAGAAATTCCAAGCCCACTTTAGTGAGTACCTCAAGAAGGGAATTGACG
CTGATGGCATGGAATCACTGTACAAGAAGGTCCATGCTGCCATCCGCGCCGATCCTACCA
TGGCCAAATCGACCAAGAAGGAACCGGCTACCCACAAGAGATACAACCTCAAGAAGCTGA
CCTACGAGCAGAGGAAGGCCAGTCTCGTCGAAAGATTGAATGCTCTCAACTCCTCCGCTG
GTGCTGATGATGATGACGAGGAAGAGGATGACGAGTGAGAGAGTAGCCTTATCACAGTAG
TTTCATCTTATGCTGCCAAACAAACTCCATATGGCATTTAAGTTTACCTGTAGTCTTGCA
ATTTGCAACAGGCATTTTTGTTTATGTTCTGCACTCTGCTCAAAGAACCTATTTCTTTCG
GTTTTTGATTCTCAACCTTGAGCTATCAGTTATCTTATTTATGTGAGAAGCTGCCGTTTG
GATATTGA