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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0895500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:38928823:38930008:1 gene:Os01g0895500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 5, RHOMBOID 5 description:Peptidase S54, rhomboid domain containing protein. (Os01t0895500-01)
Sequence

ATGGGCAAGCCTCTGATCTATGAGATATTGGAGAAACCAGCCAGTAGTAGCGTGATAGGC
ATCTGCTCCCTGATCTGGTTCTTCATCCAGAAGAGGAACATTGGGTATGGAGATGTTGGG
CTGAGCTACGAGGCCGCCATGGAAGGCGGGCAGTACTGGAGGATCATCACCTCCGCCTTC
TCGCACATCAGCGTGGTGCATTTGGTGTTCAACATGAGTGCATTGTGGAGCCTTGGTGTT
GTCGAGCAGTTGGGGCAGATTGGGCTCGGTGTTGAGTACTACCTCCATTACACGCTTGTG
CTCGTGGTGCTGTCTGGATTGCTTGTTCTTGGGTTCTACCATGTGATGATTCAGAAGTTC
AAGGTGGAGTATTTCAGGAGGGTGACCGCTGTCGGGTACTCGTGCGTCGTGTTTGGGTGG
ATGACAATTCTGGCTACAAAGCAACCGTCGTCGAAGCTGAATATCTTCGGGGTTCTTTCG
CTGCCTATCAGCTTCGCGCCGTTTGAATCGCTGATATTCACATCTATCATGGTTCCTCAG
GCGAGTTTCATTGGCCACTTATCAGGGATCATTGTTGGCTACTCAATTGCCTGGGGTTTG
GTTCATGGAATGAATAACTATTGGGCTATCACCATGTTTGGTTGGATTGTGCTTGTGTTT
GTCTTGAGCTTGAAGCGTACAGGCTCGATGGATTTGAGATTTATTGAGATTGAGCCAGTT
ACGGATCCCTCGCTGCCTTCTGTTGGCGTAGTTGCCTCAAGAAATGGCAGGACTCTTCAG
ATGGATGTGCTTCCGAGAAGAGGAGTTGCAGACATTGTATGA

Peptide Sequence

PEP ID

Os01t0895500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:38928823:38930008:1 gene:Os01g0895500 transcript:Os01t0895500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 5, RHOMBOID 5 description:Peptidase S54, rhomboid domain containing protein. (Os01t0895500-01)
Sequence

MGKPLIYEILEKPASSSVIGICSLIWFFIQKRNIGYGDVGLSYEAAMEGGQYWRIITSAF
SHISVVHLVFNMSALWSLGVVEQLGQIGLGVEYYLHYTLVLVVLSGLLVLGFYHVMIQKF
KVEYFRRVTAVGYSCVVFGWMTILATKQPSSKLNIFGVLSLPISFAPFESLIFTSIMVPQ
ASFIGHLSGIIVGYSIAWGLVHGMNNYWAITMFGWIVLVFVLSLKRTGSMDLRFIEIEPV
TDPSLPSVGVVASRNGRTLQMDVLPRRGVADIV

Transcript Sequence

Transcript ID

Os01t0895500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38928823:38930008:1 gene:Os01g0895500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Rhomboid 5, RHOMBOID 5 description:Peptidase S54, rhomboid domain containing protein. (Os01t0895500-01)
Sequence

AGATTTCTCCCGCTAATTTGCTCATCCGACCAGCCAAACTGTCGCCTCGCGATCAGCATG
TACCCCAATCCCCGCATAGGCTGCGTGCTGGGTAGATCTCTTGCCGTGGAAGTATTGATC
CTGTCTTGTTCCTGACCAACTGAGGATTGGAGCTTTGTGATTCTGTGATCTTCTTGTGGA
GATATGGGCAAGCCTCTGATCTATGAGATATTGGAGAAACCAGCCAGTAGTAGCGTGATA
GGCATCTGCTCCCTGATCTGGTTCTTCATCCAGAAGAGGAACATTGGGTATGGAGATGTT
GGGCTGAGCTACGAGGCCGCCATGGAAGGCGGGCAGTACTGGAGGATCATCACCTCCGCC
TTCTCGCACATCAGCGTGGTGCATTTGGTGTTCAACATGAGTGCATTGTGGAGCCTTGGT
GTTGTCGAGCAGTTGGGGCAGATTGGGCTCGGTGTTGAGTACTACCTCCATTACACGCTT
GTGCTCGTGGTGCTGTCTGGATTGCTTGTTCTTGGGTTCTACCATGTGATGATTCAGAAG
TTCAAGGTGGAGTATTTCAGGAGGGTGACCGCTGTCGGGTACTCGTGCGTCGTGTTTGGG
TGGATGACAATTCTGGCTACAAAGCAACCGTCGTCGAAGCTGAATATCTTCGGGGTTCTT
TCGCTGCCTATCAGCTTCGCGCCGTTTGAATCGCTGATATTCACATCTATCATGGTTCCT
CAGGCGAGTTTCATTGGCCACTTATCAGGGATCATTGTTGGCTACTCAATTGCCTGGGGT
TTGGTTCATGGAATGAATAACTATTGGGCTATCACCATGTTTGGTTGGATTGTGCTTGTG
TTTGTCTTGAGCTTGAAGCGTACAGGCTCGATGGATTTGAGATTTATTGAGATTGAGCCA
GTTACGGATCCCTCGCTGCCTTCTGTTGGCGTAGTTGCCTCAAGAAATGGCAGGACTCTT
CAGATGGATGTGCTTCCGAGAAGAGGAGTTGCAGACATTGTATGACTTGCAAAGTGGGAT
GCTCAATCGCTGAAATGTTTTATAGATAGTCCTAAACTTCTCTGAAAATTTTCAGACATT
GTATTACTTGCAGAGTGGAATACTCGGCCGCTGAAATGTTCGATAGATAGTATTGTTCAA
GCCCTGAATTGTATCATGCTGATTCAATACTATACTTCCAGTTTTG