Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0893400-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:38843730:38846506:1 gene:Os01g0893400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, TAZ-type domain containing protein. (Os01t0893400-01);Zinc finger, TAZ-type domain containing protein. (Os01t0893400-02)
Sequence

ATGGCATGTCTTGAGCTGGATTCTTCACAATTCCTACTGAATGGGGATGGCAGTGTGATC
GGCAGCCCATTTGATATCCAGCTTGAGTGCAATAGCTTCACAGGCTCCAAAGCTGTTCAA
GATCATAGCCGATATACTCTTCCTTCACAGTGCACTAATGCCCCTGATCCACCTCCATTA
CCCGGAACTTCTTATGGCACACACAGAACTTCCAGGAATGCAAAGGCTTGCAGGTGTGTC
CCTGAAGAGATCCAGGATTTCTGGGACAGGATGTTCTTCGAAGCGTATCAATATGATCTC
CGTGTTTTGACGGAAGATGGCAATGAGATCATGTCACATTCCTGCGTTGTTGGTATTAAA
TCTCCTGTTCTAAGAGCTATGTTGGAAGAAGCTAAAGTACAAGGTGGCATCCGACACATC
CTGATACCTGGTGTACCATCAGAAGCAGTACATGTTTTCATCAGATTTCTTTATTCCTCG
CGTTTTGAGCAGTATCAGATGAAGAGGTATGTACTTCATCTGCTTGTACTCTCCCACGTT
TTCTCAGTACCATCTCTGAAGAGAGTCTGCATCAACCAACTGGAGACATCTTTGCTTTCT
CCTGAGAACGTGGTAGACATACTACAACTTGCTAGACTGTGCGACGCGCCGCGGCTCTCC
CTCGTATGCACTCGTATGATCATCGGAGATTTCAAGGCTATCACTCAAACAGAAGGGTGG
AGAGTGATGAGACAAGCCAACCCAAGCCTGGAGCAGGAGCTGCTTGAGTCCCTCGTCGAA
GAAGATACAAAAAGGCAAGAGAGAGCAAGAAGGCTGGAGGAGAATAAGGTTTATCTGCAG
CTACATGAAGCTATGGAAGCTCTTATTCATATATGTCGAGATGGATGCAGGACAATTGGC
CCTCGAGATCAAACGCTAAAGAGCAGTCAGGCCGTTTGCAGGTTTCCTGCCTGCAAGGGC
ATCGAGCTGCTCCTGCGCCATTTCTCGGCGTGCAAAATGCGGGTGCCTGGTGGCTGCGCT
AACTGCAAGCGCATATGGCAGCTTCTTGAGCTGCATTCTCGCATGTGCTCTGCACTTGAA
ACTTGCCATGTTCCCCTCTGTAGGCATTTCAAGGAGAAAATGCAACATCTGAGCAGAAAG
GAGGAGGCCAAGTGGAATCTTTTGGTGTCCAAGGTGTTGGAGAGCAAAGCAACAACCAGT
TCCATCTCAGAAAGGAGAAAATTTCCATCCCTGAAAACATAG

Peptide Sequence

PEP ID

Os01t0893400-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:38843730:38846506:1 gene:Os01g0893400 transcript:Os01t0893400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, TAZ-type domain containing protein. (Os01t0893400-01);Zinc finger, TAZ-type domain containing protein. (Os01t0893400-02)
Sequence

MACLELDSSQFLLNGDGSVIGSPFDIQLECNSFTGSKAVQDHSRYTLPSQCTNAPDPPPL
PGTSYGTHRTSRNAKACRCVPEEIQDFWDRMFFEAYQYDLRVLTEDGNEIMSHSCVVGIK
SPVLRAMLEEAKVQGGIRHILIPGVPSEAVHVFIRFLYSSRFEQYQMKRYVLHLLVLSHV
FSVPSLKRVCINQLETSLLSPENVVDILQLARLCDAPRLSLVCTRMIIGDFKAITQTEGW
RVMRQANPSLEQELLESLVEEDTKRQERARRLEENKVYLQLHEAMEALIHICRDGCRTIG
PRDQTLKSSQAVCRFPACKGIELLLRHFSACKMRVPGGCANCKRIWQLLELHSRMCSALE
TCHVPLCRHFKEKMQHLSRKEEAKWNLLVSKVLESKATTSSISERRKFPSLKT

Transcript Sequence

Transcript ID

Os01t0893400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38843730:38846506:1 gene:Os01g0893400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, TAZ-type domain containing protein. (Os01t0893400-01);Zinc finger, TAZ-type domain containing protein. (Os01t0893400-02)
Sequence

GTAAGTGGTAACTGGCGACGCGGTGGTGCCGTGGTGGTGGTGGTGCAGCTTCTCTCCTCT
TCTGAATCTTCTCGACTTCTCGTCCTCCCTGTTGCAGAGGCTTCTCCGGCGAGGCCGCGA
GGCTTGATTTCAGTGCATAGTTGATGGCATGTCTTGAGCTGGATTCTTCACAATTCCTAC
TGAATGGGGATGGCAGTGTGATCGGCAGCCCATTTGATATCCAGCTTGAGTGCAATAGCT
TCACAGGCTCCAAAGCTGTTCAAGATCATAGCCGATATACTCTTCCTTCACAGTGCACTA
ATGCCCCTGATCCACCTCCATTACCCGGAACTTCTTATGGCACACACAGAACTTCCAGGA
ATGCAAAGGCTTGCAGGTGTGTCCCTGAAGAGATCCAGGATTTCTGGGACAGGATGTTCT
TCGAAGCGTATCAATATGATCTCCGTGTTTTGACGGAAGATGGCAATGAGATCATGTCAC
ATTCCTGCGTTGTTGGTATTAAATCTCCTGTTCTAAGAGCTATGTTGGAAGAAGCTAAAG
TACAAGGTGGCATCCGACACATCCTGATACCTGGTGTACCATCAGAAGCAGTACATGTTT
TCATCAGATTTCTTTATTCCTCGCGTTTTGAGCAGTATCAGATGAAGAGGTATGTACTTC
ATCTGCTTGTACTCTCCCACGTTTTCTCAGTACCATCTCTGAAGAGAGTCTGCATCAACC
AACTGGAGACATCTTTGCTTTCTCCTGAGAACGTGGTAGACATACTACAACTTGCTAGAC
TGTGCGACGCGCCGCGGCTCTCCCTCGTATGCACTCGTATGATCATCGGAGATTTCAAGG
CTATCACTCAAACAGAAGGGTGGAGAGTGATGAGACAAGCCAACCCAAGCCTGGAGCAGG
AGCTGCTTGAGTCCCTCGTCGAAGAAGATACAAAAAGGCAAGAGAGAGCAAGAAGGCTGG
AGGAGAATAAGGTTTATCTGCAGCTACATGAAGCTATGGAAGCTCTTATTCATATATGTC
GAGATGGATGCAGGACAATTGGCCCTCGAGATCAAACGCTAAAGAGCAGTCAGGCCGTTT
GCAGGTTTCCTGCCTGCAAGGGCATCGAGCTGCTCCTGCGCCATTTCTCGGCGTGCAAAA
TGCGGGTGCCTGGTGGCTGCGCTAACTGCAAGCGCATATGGCAGCTTCTTGAGCTGCATT
CTCGCATGTGCTCTGCACTTGAAACTTGCCATGTTCCCCTCTGTAGGCATTTCAAGGAGA
AAATGCAACATCTGAGCAGAAAGGAGGAGGCCAAGTGGAATCTTTTGGTGTCCAAGGTGT
TGGAGAGCAAAGCAACAACCAGTTCCATCTCAGAAAGGAGAAAATTTCCATCCCTGAAAA
CATAGTGCTACGTTCTAGGTTCACAAGTTACAAGAATTATGCACTAACACATAAACTCGA
TGTAAACTGTGAACATTTGTTGTACTGAAGATTAAAAGGTGTCTCAATTCTAACATGACA
ATCTG