Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0889000-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:38650527:38654601:1 gene:Os01g0889000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os01t0889000-01)
Sequence	ATGCCGCCCAAATCGAAGGCGGCGGCGGCGGCGGCCGCCGCCGCGGCGGCGCAGCCGGTC GCCGTGGAGGACCTCTTCACCACGCTGCACCGCCACATCGAGGCCGGCGAGTTCCCGCAG GCCGTCAAGGTCGCCGACCAAGTTCTCGCGGCGGCGCCGGGCGACGAGGATGCGGTGCGG TGCAAGGTGGTGGCGCACATCAAGTCCGATGCGATTGAGAAGGCGCTCGCCGCGATCCGC GCCGCCGAGCGCCTCCCGATCGACCTCAGCTACTGCAAGGCCTATTGCTACTACAGGCAA AATAAACTGCAAGAAGCTCTAGACCTATTGAAAGGTCAAGAAGAAACCTCTGCTATTCTT CAGTTGGAATCTCAGATTTATTATAGGCTAGGTAGAATGAATGATTGCATGAATAGCTAT GAGAAGCTTCAGAAATTTAAGGTTGAGTCAATGGATCTGAAGATAAATATCATTGCTGCT CTGGTTGCTGCTGGAAGGGCCTCTGAAGTTCAGGCAACCATGAAGGCACAAAAAGTTGAT CTCTCCTCGAGGGCACTCAGAGATACTCGAAGCTTTGAGCTTGCATATAATTCTGCCTGC TCGTTGATAGAAAATAAAAAGTATTCAGAAGCTAAAGAGCAGCTGGACTTGGCAAAAAGA ATTGGGAAAGAAGAGCTTATGGTGGACGAATATGGAGATGATGATATTGAATATGAACTA GCTCCTGTGTCTGCTCAGCTTGCTTATGTGCATCAGCTACAAGGACAAACCCAGGAAGCT ATGGAAACCTATAATAATATAACAAGCAGGAATTTGGCAGATCCCTCATCACTTGCTGTG GCAACAACGAACCTTATCTCGTTGAAAGGAACCAGGGACGCTGCTGATAGCTTGAGGAAG CTTAGCCGGCTTATTGAAAAATCTACTGCTCCCAACCAGTTGCAACTTATCGAAAGCCTT GAATCCAAGCTATCACCAAGGCAAAAAGAAGCTCTGTATTCTGCATATGTTCTTTTACTC CTCCACGCGAACAAAATTGATCAGGCACATGAGTTTGTCAGTGGACTACTTGGTATGTTT CAGGACAGCACATTCCCTGTTTTGCTTCAAGCTGCAGTTCATGTGAGAGAAAAGAAGGTG CAGAAAGCTGAAGAAGTTCTTAGCCAGTATGCTGAGAAGCATCCTGAGAATTCTAAAGGA GTCCTCCTTTCGCTTGCTCAGATCGCTGCCAGTGCCAATCATTTTCAGATTGCTGCTGAT TCATTGTCTAAAATAGTTGACATCCAGCACATGCCTGCTACAGTCGCTACACTAGTAGCT CTTAAAGAGCGCCTTGGTGACTCTAATGGTGCTTCTTCTGTGCTTGATTCTGCTATCCAG TGGTGGAAGAATTCCATGACTGAGGATAACAAATTAGAGGTGTTCATGCGGGAGGCTGCT ACATTTAAGCTCAACCATGGGCGTGACGAAGAGGCCTGCCAATTGTATGAGGATCTTGTT AAGAGCTTTGGAAGCGCAGAAGCGTTGGCGGGGCTAGTAGCAACTTCAGCGCGCACCAAC CTTGAGAAAGCTGAACAGTATGAGAAGAAACTGAAACCATTGCCAGGTCTCAAGGGAATT AATGTTGAGAGCCTGGAGAAAACTTCTGGTGCAAGGCCTTTTGAGGCGCCCAAACCCATG GAACAGGACGTTACTGACGAAGTGAAGAAGCAGAAGGCTAAGAAGAGGAAGAGGAAACCT AGATACCCGAAAGGCTTTGATCCAGCAAACCCAGGGCCACCACCAGATCCGGAGAGATGG CTACCCAAGAGAGAGCGGTCAAGTTACCGCCCAAAGAGGAAGGATAAGAGGGCTCAGGTC AGAGGTGCTCAAGGAGCTGTGTCAAGAGATGGAACTTCATCTGCGAGCGCCAGTTCATCT TCGAAAGCAAACCAAGCCACCAAAGCTCCAGCTGCAGCCCCAGAACCACCAAAGGGTTCC AACAAGTCCCGGAAGAAAAAATCGAGATGA

Peptide Sequence

PEP ID	Os01t0889000-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:38650527:38654601:1 gene:Os01g0889000 transcript:Os01t0889000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os01t0889000-01)
Sequence	MPPKSKAAAAAAAAAAAQPVAVEDLFTTLHRHIEAGEFPQAVKVADQVLAAAPGDEDAVR CKVVAHIKSDAIEKALAAIRAAERLPIDLSYCKAYCYYRQNKLQEALDLLKGQEETSAIL QLESQIYYRLGRMNDCMNSYEKLQKFKVESMDLKINIIAALVAAGRASEVQATMKAQKVD LSSRALRDTRSFELAYNSACSLIENKKYSEAKEQLDLAKRIGKEELMVDEYGDDDIEYEL APVSAQLAYVHQLQGQTQEAMETYNNITSRNLADPSSLAVATTNLISLKGTRDAADSLRK LSRLIEKSTAPNQLQLIESLESKLSPRQKEALYSAYVLLLLHANKIDQAHEFVSGLLGMF QDSTFPVLLQAAVHVREKKVQKAEEVLSQYAEKHPENSKGVLLSLAQIAASANHFQIAAD SLSKIVDIQHMPATVATLVALKERLGDSNGASSVLDSAIQWWKNSMTEDNKLEVFMREAA TFKLNHGRDEEACQLYEDLVKSFGSAEALAGLVATSARTNLEKAEQYEKKLKPLPGLKGI NVESLEKTSGARPFEAPKPMEQDVTDEVKKQKAKKRKRKPRYPKGFDPANPGPPPDPERW LPKRERSSYRPKRKDKRAQVRGAQGAVSRDGTSSASASSSSKANQATKAPAAAPEPPKGS NKSRKKKSR

Transcript Sequence

Transcript ID	Os01t0889000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:38650527:38654601:1 gene:Os01g0889000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os01t0889000-01)
Sequence	GAGGCTCGTGAGTCGTCAGCCCTCTCCTCCAAGCTAACCACATCCCGATGCCGCCCAAAT CGAAGGCGGCGGCGGCGGCGGCCGCCGCCGCGGCGGCGCAGCCGGTCGCCGTGGAGGACC TCTTCACCACGCTGCACCGCCACATCGAGGCCGGCGAGTTCCCGCAGGCCGTCAAGGTCG CCGACCAAGTTCTCGCGGCGGCGCCGGGCGACGAGGATGCGGTGCGGTGCAAGGTGGTGG CGCACATCAAGTCCGATGCGATTGAGAAGGCGCTCGCCGCGATCCGCGCCGCCGAGCGCC TCCCGATCGACCTCAGCTACTGCAAGGCCTATTGCTACTACAGGCAAAATAAACTGCAAG AAGCTCTAGACCTATTGAAAGGTCAAGAAGAAACCTCTGCTATTCTTCAGTTGGAATCTC AGATTTATTATAGGCTAGGTAGAATGAATGATTGCATGAATAGCTATGAGAAGCTTCAGA AATTTAAGGTTGAGTCAATGGATCTGAAGATAAATATCATTGCTGCTCTGGTTGCTGCTG GAAGGGCCTCTGAAGTTCAGGCAACCATGAAGGCACAAAAAGTTGATCTCTCCTCGAGGG CACTCAGAGATACTCGAAGCTTTGAGCTTGCATATAATTCTGCCTGCTCGTTGATAGAAA ATAAAAAGTATTCAGAAGCTAAAGAGCAGCTGGACTTGGCAAAAAGAATTGGGAAAGAAG AGCTTATGGTGGACGAATATGGAGATGATGATATTGAATATGAACTAGCTCCTGTGTCTG CTCAGCTTGCTTATGTGCATCAGCTACAAGGACAAACCCAGGAAGCTATGGAAACCTATA ATAATATAACAAGCAGGAATTTGGCAGATCCCTCATCACTTGCTGTGGCAACAACGAACC TTATCTCGTTGAAAGGAACCAGGGACGCTGCTGATAGCTTGAGGAAGCTTAGCCGGCTTA TTGAAAAATCTACTGCTCCCAACCAGTTGCAACTTATCGAAAGCCTTGAATCCAAGCTAT CACCAAGGCAAAAAGAAGCTCTGTATTCTGCATATGTTCTTTTACTCCTCCACGCGAACA AAATTGATCAGGCACATGAGTTTGTCAGTGGACTACTTGGTATGTTTCAGGACAGCACAT TCCCTGTTTTGCTTCAAGCTGCAGTTCATGTGAGAGAAAAGAAGGTGCAGAAAGCTGAAG AAGTTCTTAGCCAGTATGCTGAGAAGCATCCTGAGAATTCTAAAGGAGTCCTCCTTTCGC TTGCTCAGATCGCTGCCAGTGCCAATCATTTTCAGATTGCTGCTGATTCATTGTCTAAAA TAGTTGACATCCAGCACATGCCTGCTACAGTCGCTACACTAGTAGCTCTTAAAGAGCGCC TTGGTGACTCTAATGGTGCTTCTTCTGTGCTTGATTCTGCTATCCAGTGGTGGAAGAATT CCATGACTGAGGATAACAAATTAGAGGTGTTCATGCGGGAGGCTGCTACATTTAAGCTCA ACCATGGGCGTGACGAAGAGGCCTGCCAATTGTATGAGGATCTTGTTAAGAGCTTTGGAA GCGCAGAAGCGTTGGCGGGGCTAGTAGCAACTTCAGCGCGCACCAACCTTGAGAAAGCTG AACAGTATGAGAAGAAACTGAAACCATTGCCAGGTCTCAAGGGAATTAATGTTGAGAGCC TGGAGAAAACTTCTGGTGCAAGGCCTTTTGAGGCGCCCAAACCCATGGAACAGGACGTTA CTGACGAAGTGAAGAAGCAGAAGGCTAAGAAGAGGAAGAGGAAACCTAGATACCCGAAAG GCTTTGATCCAGCAAACCCAGGGCCACCACCAGATCCGGAGAGATGGCTACCCAAGAGAG AGCGGTCAAGTTACCGCCCAAAGAGGAAGGATAAGAGGGCTCAGGTCAGAGGTGCTCAAG GAGCTGTGTCAAGAGATGGAACTTCATCTGCGAGCGCCAGTTCATCTTCGAAAGCAAACC AAGCCACCAAAGCTCCAGCTGCAGCCCCAGAACCACCAAAGGGTTCCAACAAGTCCCGGA AGAAAAAATCGAGATGACGACGAATCCAAACTATCACAGTTCACAAAATCAAAGATACCC TAGACTCTGTTCGTTTAGCGTTTTGACTCGCAATTTTGGTGTTGATTGCATTGTGTTGCC GGATTTGTCATGCTTTTACAATCATATTTTGCTGGCCACATCCGAGTCTGTACTGTTGCC AATTCTGTTAAACTGATGCAGATCTGATTGAAGTTCCGCCCTTTACATG