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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0887100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:38544060:38545821:1 gene:Os01g0887100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol synthase, CDP-ME synthase description:Similar to 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol synthase. (Os01t0887100-01)
Sequence

GTGTGTGATCCAGACTACAAAGATATATTTGAAGGCTCTATTGAAAACGTGCAAATACCA
ATTAAATTTGCACTCCCAGGGAAAGAGAGACAAGACTCTGTTTATAATGGACTACAGGAG
ATTGATGGAGACTCTGAACTTGTTTGTGTACATGATTCTGCAAGGCCCTTAGTGTCATCT
GAAGATGTCAAAAAGGTATTAGAAGATGCTATAGTGCACGGAGCTGCTGTTCTTGGTGTG
CCTGTGAAAGCTACTATCAAGGAGGCTGACAGCAATTCTTTTGTCGTAAAAACACTTGAT
AGGAAAACTCTTTGGGAAATGCAAACTCCACAGGTGATGAGGCCCAGTTTACTCAGAGAT
GGTTTTGAGCTAGTTAAACGGGATGGACTTGAGGTCACTGATGACGTGTCCATTGTAGAA
TACCTGAAGCACTCTGTTTATATCACAGAGGGCTCTTACACAAACATAAAGGTGACGACT
CCTGATGACTTGCTCCTGGCTGAGCGCCTGATGAATGAGAAATAA

Peptide Sequence

PEP ID

Os01t0887100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:38544060:38545821:1 gene:Os01g0887100 transcript:Os01t0887100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol synthase, CDP-ME synthase description:Similar to 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol synthase. (Os01t0887100-01)
Sequence

VCDPDYKDIFEGSIENVQIPIKFALPGKERQDSVYNGLQEIDGDSELVCVHDSARPLVSS
EDVKKVLEDAIVHGAAVLGVPVKATIKEADSNSFVVKTLDRKTLWEMQTPQVMRPSLLRD
GFELVKRDGLEVTDDVSIVEYLKHSVYITEGSYTNIKVTTPDDLLLAERLMNEK

Transcript Sequence

Transcript ID

Os01t0887100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38544060:38545821:1 gene:Os01g0887100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol synthase, CDP-ME synthase description:Similar to 4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol synthase. (Os01t0887100-01)
Sequence

TGGTGTGTGATCCAGACTACAAAGATATATTTGAAGGCTCTATTGAAAACGTGCAAATAC
CAATTAAATTTGCACTCCCAGGGAAAGAGAGACAAGACTCTGTTTATAATGGACTACAGG
AGATTGATGGAGACTCTGAACTTGTTTGTGTACATGATTCTGCAAGGCCCTTAGTGTCAT
CTGAAGATGTCAAAAAGGTATTAGAAGATGCTATAGTGCACGGAGCTGCTGTTCTTGGTG
TGCCTGTGAAAGCTACTATCAAGGAGGCTGACAGCAATTCTTTTGTCGTAAAAACACTTG
ATAGGAAAACTCTTTGGGAAATGCAAACTCCACAGGTGATGAGGCCCAGTTTACTCAGAG
ATGGTTTTGAGCTAGTTAAACGGGATGGACTTGAGGTCACTGATGACGTGTCCATTGTAG
AATACCTGAAGCACTCTGTTTATATCACAGAGGGCTCTTACACAAACATAAAGGTGACGA
CTCCTGATGACTTGCTCCTGGCTGAGCGCCTGATGAATGAGAAATAAAGCCGATAGAGAA
AAGGTTAACTGCTACTTGGTTCTAGATAAACCTGTACGAAATTGTCAGGCATCATTCTTT
CGCATTTCCACAGTTTTGAAAACCCAGAATATTATCATGTAGCCCAGACACCAGATAGCT
GACCTGTATGTAACATTCTTTCGATACGGAAGAGTTTTTGTTGAGTTCATACTAC