Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0886900-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:38534739:38539826:1 gene:Os01g0886900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ROOT UV-B SENSITIVE 6A description:Similar to EMB1879 (EMBRYO DEFECTIVE 1879). (Os01t0886900-00)
Sequence

ATGGGTGCGCGTAGCGAAGGAAAGCGCCTCCACTATAAAACGCTCCACCCTCTCTCTCTC
TCACCTCCATCTTGGCATTGCGTTCTCCGCCATATACAACTCTCTCTCTCTCTCTCCAAC
CACTGCGTCGTCTCGCATCGGTCGGTGTCGCGACCACCCGGTCGCCGCCGGTGGAGGTTT
CGGGTCGGCCACCTGACTAAGCCGCGGCCACGCAGGTCGCCGGCGCCGGTGCGCGCGGCA
GGGATGGCGCCGACGGTGGGGATCAAGCGGTCGGCGGCGGCGGTGGCGACGCAGACCATC
AGCGTGCCGCCGCCCGACGCGCGGTTCGCGGTGCGGGAGGCCGTGCGGGCCACCATCGCG
TCGCCGCCGGTCGAGGCGCCCCCCGCCGCCGCCGGGAAGGCGGCGGCGCCGGCGCCCGCG
GTGGAGGGGTTCCTGTGCCTGGAGGAGGTGGACGGGAGGCGGTGGAGCTACGTGGTGGAT
GGGGGACAGGGGAAAGGGAAGGGGAGGGGGAGGGGGAGGAGCGGCGCGGCCGTTCCCATG
GGGGCCTCCGTTAGGGCCGTGCCGCTGCAGTCGCCGCTGCCGCCCGCCGAGGAAGTTATG
GCATTCATAAGATCATATGTTGTGCCTGAAGGCTTTCCGGATAGTGTTACTCCGTCATAC
GTCCCATACATGACCTGGAGAGCCCTGAAGCATTTCTTTGGTGGAGCTATGGGTGTTTTT
ACAACAAGAACCTTGCTGAGCTCTGTTGGAGTCTCTCAAAGCAAAGTAACACCAGGAGCC
ATTGCTATCAACTGGATCCTCAAGGATGGTGCAGGTCGTGTCGGAAAAATGCTTTTTGCA
CGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAGCTCCGCTTTTCTAGTGATCTATTG
CTGGAGATTGGAGCTGGAATTGAGTTAGCAACTGCAGCCTTTCCTCAATTTTTCTTGCCC
ATGGCTTGCGTAGCAAATGTTGTAAAGAATGTCGCGGCTGTTACATCAACATCAACTCGA
ACTCCAATTTATAAGGCCTATGCAAGAGGAGAAAACATTGGAGATGTCACTGCTAAAGGC
GAATCTGTTGGGAACATTGCAGATCTGCTGGGCACTGGCTTGAGCATCTTCATTTCAAAA
CGGAATCCATCATTGGTGACTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCA
TATCATGAGGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
GTGGATTCCTTCATTAAAACTGGGCATATCCCCTCATTGAAGGAAGGGAACTCACAGGAG
ACGATATTTAATCCACCTTGGCGGCATGAGCCAGTTGCAATAGGATCACGATTTGGAGAA
GCGTTTCAAGAACCTGCTTCATTTGTTGCCATACGGCCATTGTTTGAGGATGAGAGATAC
ATGGTAACATATAACCCCGCAAAGGATAAGGTATATGCTTTGCTCAAGGATCAAGCAAAG
TCAGATGACATTATCAAAGCGGCTTTCCATGCTCATGTATTACTGCATTTCATCAATGCG
TCACATGCACGGAAGCAGATGAACTCCAGGAGATCAGATCCTTATGGAAACCCATGTAAC
ATGGATTTCATGGCACACATAGCTGAGTCCTGCAAAATTGTTTCTTCCTCTTATGGAACT
TTCAAGAAGAAAGCTAGAGAACAGGGTTGGATAATGTCAGAATCACTGCTCAACCCTGGG
AAAGCTCGGTTGTGTCCTGCAAGGCCATAA

Peptide Sequence

PEP ID

Os01t0886900-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:38534739:38539826:1 gene:Os01g0886900 transcript:Os01t0886900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ROOT UV-B SENSITIVE 6A description:Similar to EMB1879 (EMBRYO DEFECTIVE 1879). (Os01t0886900-00)
Sequence

MGARSEGKRLHYKTLHPLSLSPPSWHCVLRHIQLSLSLSNHCVVSHRSVSRPPGRRRWRF
RVGHLTKPRPRRSPAPVRAAGMAPTVGIKRSAAAVATQTISVPPPDARFAVREAVRATIA
SPPVEAPPAAAGKAAAPAPAVEGFLCLEEVDGRRWSYVVDGGQGKGKGRGRGRSGAAVPM
GASVRAVPLQSPLPPAEEVMAFIRSYVVPEGFPDSVTPSYVPYMTWRALKHFFGGAMGVF
TTRTLLSSVGVSQSKVTPGAIAINWILKDGAGRVGKMLFARQGKKFDYDLKQLRFSSDLL
LEIGAGIELATAAFPQFFLPMACVANVVKNVAAVTSTSTRTPIYKAYARGENIGDVTAKG
ESVGNIADLLGTGLSIFISKRNPSLVTSFAFLSCGYLWSSYHEVRSVVLNTLNRARFTVA
VDSFIKTGHIPSLKEGNSQETIFNPPWRHEPVAIGSRFGEAFQEPASFVAIRPLFEDERY
MVTYNPAKDKVYALLKDQAKSDDIIKAAFHAHVLLHFINASHARKQMNSRRSDPYGNPCN
MDFMAHIAESCKIVSSSYGTFKKKAREQGWIMSESLLNPGKARLCPARP

Transcript Sequence

Transcript ID

Os01t0886900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38534739:38539826:1 gene:Os01g0886900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ROOT UV-B SENSITIVE 6A description:Similar to EMB1879 (EMBRYO DEFECTIVE 1879). (Os01t0886900-00)
Sequence

ATGGGTGCGCGTAGCGAAGGAAAGCGCCTCCACTATAAAACGCTCCACCCTCTCTCTCTC
TCACCTCCATCTTGGCATTGCGTTCTCCGCCATATACAACTCTCTCTCTCTCTCTCCAAC
CACTGCGTCGTCTCGCATCGGTCGGTGTCGCGACCACCCGGTCGCCGCCGGTGGAGGTTT
CGGGTCGGCCACCTGACTAAGCCGCGGCCACGCAGGTCGCCGGCGCCGGTGCGCGCGGCA
GGGATGGCGCCGACGGTGGGGATCAAGCGGTCGGCGGCGGCGGTGGCGACGCAGACCATC
AGCGTGCCGCCGCCCGACGCGCGGTTCGCGGTGCGGGAGGCCGTGCGGGCCACCATCGCG
TCGCCGCCGGTCGAGGCGCCCCCCGCCGCCGCCGGGAAGGCGGCGGCGCCGGCGCCCGCG
GTGGAGGGGTTCCTGTGCCTGGAGGAGGTGGACGGGAGGCGGTGGAGCTACGTGGTGGAT
GGGGGACAGGGGAAAGGGAAGGGGAGGGGGAGGGGGAGGAGCGGCGCGGCCGTTCCCATG
GGGGCCTCCGTTAGGGCCGTGCCGCTGCAGTCGCCGCTGCCGCCCGCCGAGGAAGTTATG
GCATTCATAAGATCATATGTTGTGCCTGAAGGCTTTCCGGATAGTGTTACTCCGTCATAC
GTCCCATACATGACCTGGAGAGCCCTGAAGCATTTCTTTGGTGGAGCTATGGGTGTTTTT
ACAACAAGAACCTTGCTGAGCTCTGTTGGAGTCTCTCAAAGCAAAGTAACACCAGGAGCC
ATTGCTATCAACTGGATCCTCAAGGATGGTGCAGGTCGTGTCGGAAAAATGCTTTTTGCA
CGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAGCTCCGCTTTTCTAGTGATCTATTG
CTGGAGATTGGAGCTGGAATTGAGTTAGCAACTGCAGCCTTTCCTCAATTTTTCTTGCCC
ATGGCTTGCGTAGCAAATGTTGTAAAGAATGTCGCGGCTGTTACATCAACATCAACTCGA
ACTCCAATTTATAAGGCCTATGCAAGAGGAGAAAACATTGGAGATGTCACTGCTAAAGGC
GAATCTGTTGGGAACATTGCAGATCTGCTGGGCACTGGCTTGAGCATCTTCATTTCAAAA
CGGAATCCATCATTGGTGACTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCA
TATCATGAGGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
GTGGATTCCTTCATTAAAACTGGGCATATCCCCTCATTGAAGGAAGGGAACTCACAGGAG
ACGATATTTAATCCACCTTGGCGGCATGAGCCAGTTGCAATAGGATCACGATTTGGAGAA
GCGTTTCAAGAACCTGCTTCATTTGTTGCCATACGGCCATTGTTTGAGGATGAGAGATAC
ATGGTAACATATAACCCCGCAAAGGATAAGGTATATGCTTTGCTCAAGGATCAAGCAAAG
TCAGATGACATTATCAAAGCGGCTTTCCATGCTCATGTATTACTGCATTTCATCAATGCG
TCACATGCACGGAAGCAGATGAACTCCAGGAGATCAGATCCTTATGGAAACCCATGTAAC
ATGGATTTCATGGCACACATAGCTGAGTCCTGCAAAATTGTTTCTTCCTCTTATGGAACT
TTCAAGAAGAAAGCTAGAGAACAGGGTTGGATAATGTCAGAATCACTGCTCAACCCTGGG
AAAGCTCGGTTGTGTCCTGCAAGGCCATAATGATTTTACTGTTACTGGGATGGCAATATC
TTTCAGACTAACTTCTCAGCTAGACGGGATGCTCGGTTGTTTGTAGTAGCTGAACTGACA
AATGTTGGGCCCGAGCACCAAGTATGAACCAGTCATCCTGTCATGCCATGAAAACCC