Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0886200-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:38500880:38505086:1 gene:Os01g0886200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 21 description:Similar to AGAMOUS homolog. (Os01t0886200-01)
Sequence

ATGGGGAGGGGGAAGATTGAGATAAAGAGAATCGAGAACAAGACGAGCCGTCAGGTGACC
TTCTGCAAGCGCAGGAATGGGCTGCTGAAGAAGGCCTACGAGCTCGCCATACTCTGCGAC
GCTGAGATCGCACTCATCGTCTTCTCCAGCCGAGGACGCCTCTATGAGTTCTCCAATGTA
AACAGCACAAGGTCAACAATCGAGAGGTACAAGAAAGCCTCTGCCAGCACTTCAGGATCC
GCTCCAGTGATAGACGTCAATTCTCATCAATACTTTCAGCAAGAAGCAGCAAAAATGCGC
CACCAGATACAGACCTTGCAGAATGCAAACAGGCACCTCATCGGTGAGTCCATTGGCAAT
ATGACCGCAAAGGAGCTCAAGAGCCTTGAAAATCGGCTTGAAAAGGGCATCAGCCGAATT
CGATCAAAGAAGCATGAGCTGCTGTTCTCGGAGATCGAATACATGCAGAAAAGGGAAGCA
GATCTTCAGAACGAGAACATGTTCCTGAGAGCCAAGGTGGCAGAGGCCGAGCGAGCTGAA
CATGATGATCAGCAGGCGGCGGAGGACGACGAGATGGCGCCGGCGCCGGCGGTCGGCGGC
GGGTCATCGTCGGGGACAGAGCTGGAGGCGCTGCCGGCGACGTTCGACACAAGGGAATAC
TACCAGCCGGCGCCGCCGGTGAGCATGCTGGCCGCCGCGGCGGCGGCGGCGGCGGCGCAG
TACTCGTCGGACCACCACCAGACTGCTCTCCACCTCGGCTACTTCAAGGTCGACTCCGGC
AAAGGCGGCCTCCTCTAG

Peptide Sequence

PEP ID

Os01t0886200-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:38500880:38505086:1 gene:Os01g0886200 transcript:Os01t0886200-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 21 description:Similar to AGAMOUS homolog. (Os01t0886200-01)
Sequence

MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNV
NSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGN
MTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAE
HDDQQAAEDDEMAPAPAVGGGSSSGTELEALPATFDTREYYQPAPPVSMLAAAAAAAAAQ
YSSDHHQTALHLGYFKVDSGKGGLL

Transcript Sequence

Transcript ID

Os01t0886200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38500880:38505086:1 gene:Os01g0886200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:MADS BOX GENE 21 description:Similar to AGAMOUS homolog. (Os01t0886200-01)
Sequence

ATAATGTGCATCAGCCATAACTACCAGCACACACAACGACTACCCTTCTTTAAAAGGAAA
CCTCACAGAGCCCAAGGCTTCTCCATGCCGTTGCCCTAAGTTGTCTTCTCCAATCTCCAC
TCCCCACCCATCGATCAACTCACAGCTCGATCCAGCCCCCTCCAGATCTTCAGATCGGTG
GATCGATTGATCAACATGGGGAGGGGGAAGATTGAGATAAAGAGAATCGAGAACAAGACG
AGCCGTCAGGTGACCTTCTGCAAGCGCAGGAATGGGCTGCTGAAGAAGGCCTACGAGCTC
GCCATACTCTGCGACGCTGAGATCGCACTCATCGTCTTCTCCAGCCGAGGACGCCTCTAT
GAGTTCTCCAATGTAAACAGCACAAGGTCAACAATCGAGAGGTACAAGAAAGCCTCTGCC
AGCACTTCAGGATCCGCTCCAGTGATAGACGTCAATTCTCATCAATACTTTCAGCAAGAA
GCAGCAAAAATGCGCCACCAGATACAGACCTTGCAGAATGCAAACAGGCACCTCATCGGT
GAGTCCATTGGCAATATGACCGCAAAGGAGCTCAAGAGCCTTGAAAATCGGCTTGAAAAG
GGCATCAGCCGAATTCGATCAAAGAAGCATGAGCTGCTGTTCTCGGAGATCGAATACATG
CAGAAAAGGGAAGCAGATCTTCAGAACGAGAACATGTTCCTGAGAGCCAAGGTGGCAGAG
GCCGAGCGAGCTGAACATGATGATCAGCAGGCGGCGGAGGACGACGAGATGGCGCCGGCG
CCGGCGGTCGGCGGCGGGTCATCGTCGGGGACAGAGCTGGAGGCGCTGCCGGCGACGTTC
GACACAAGGGAATACTACCAGCCGGCGCCGCCGGTGAGCATGCTGGCCGCCGCGGCGGCG
GCGGCGGCGGCGCAGTACTCGTCGGACCACCACCAGACTGCTCTCCACCTCGGCTACTTC
AAGGTCGACTCCGGCAAAGGCGGCCTCCTCTAGATCGATCGCCATGGATGCAAATATTGC
ATGCATTCGATCGAATTATACTGTATTCCGTAAGAGCGACGACGATGAAGATGACAATAA
TTATTGTGGTATTGTACGTATAGTACGCTGGTAGACCTACGTATACGTATACGTATGTAT
GATGAAGAATAAGGTGGTGTTTGGTTGGAGGGGCTAAAGTGGGGCTAAACTTTAGTTCCT
CTCACAAAAATATAAGTTCCTATTATAGAGACTTATATTTTTGTGAGAGAGACTAAATTT
AGTCCTAGTTCCCAAACACCCCTAATATACATTTGTGGTGTGCATGCATGGTGTGTGGGT
ACTATATGATCAGAGTGTGCTGCATATGCGTATTCCGTTTGCTAGCTCTGACATGCATTT
GTCTAAATATATATTTTTATTTATGC