Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0886000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:38491273:38494120:-1 gene:Os01g0886000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF179 family protein. (Os01t0886000-01)
Sequence

ATGTGGGCCCTCACCCCAAACAGCGGTGGGTCCTCCTGCCTCCCGGCGAGGCGCACCCCG
CCGCCGCTCGCCGCCGCCGGCGAGGCCGGCTCGCTGGCCGCGGGGCCCGGGAGGTGGTGC
TCGTGGAGGCGTCGTCAGCCGGCGGAGCGGTGGCCCAAGCTGGCGGTCAGCGCGTCAGGG
AGGAAGAGCAAGGGCGGCCGCGACGAGGGCGGCGGCGACGAGCCCAAGAAGAACAAGGCG
GCGTCCTCCTCCTCCTCCGGAAAAGGTGATGCGTCTGCTCCCAGTGGAGATGTTTCAAAT
AATGAACTGCAATCCAATGACACAATGTATGTACCTGGTAACTTGTCATATTGGAGAGAC
GTTAGAGCAAGCTTTGTGGTTCCAAAGGTGCAAACAGTAGATGCACATACTCTACCACAA
GCAGCTACGGATGCACCAGTGCACTGTCTTCCTCGGAAGTGGGCACATTCTATTCCAATG
CCAGAATCTGGTTGTGTGCTGGTTGCTGCTGAAGAGCTTGATGGCAATGGTACGTTTGAG
AGAACTGTAATTCTCCTCCTAAGATTAGGTTCAAGAGATGCCTATGACGGCCCATTTGGC
GTCATCCTAAACCGTCCACTGTATACAAAAATGAAACACGTGAACCCATCGTTCCGCAAC
CAGGCAACCCCTTTTAGTGATTGCTCCCTCTTCTTTGGGGGACCTGTCGACATGAGCATA
TTCTTGATGAGGACTACCGATGACAGACCAATTAAGGGGTTCGAAGAGGTGTCGCCAGGC
GTCTGCTTCGGTTTCAGGACTGACCTAGAGAAGGCCAGTGCTCTTTTGAAGAGTGGCGCG
GTTAAGCCTGAGGACTTAAACTTCTATGTTGGGTACTCTGCCTGGGATTACGACCAGTTG
TTGAGCGAGATTGATCAAGGATACTGGCATGTCACTTCCTGTAGCTCAGGCCTGATAAGC
GACTCCCTTGCAACAGATCCTTCTTGCCTATGGACTGAGATATTGAAGCTGATGGGAGGC
CAGTACGCAGAACTGAGTCAAAAGCCAAAGGAAGATGGCTCGTGA

Peptide Sequence

PEP ID

Os01t0886000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:38491273:38494120:-1 gene:Os01g0886000 transcript:Os01t0886000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF179 family protein. (Os01t0886000-01)
Sequence

MWALTPNSGGSSCLPARRTPPPLAAAGEAGSLAAGPGRWCSWRRRQPAERWPKLAVSASG
RKSKGGRDEGGGDEPKKNKAASSSSSGKGDASAPSGDVSNNELQSNDTMYVPGNLSYWRD
VRASFVVPKVQTVDAHTLPQAATDAPVHCLPRKWAHSIPMPESGCVLVAAEELDGNGTFE
RTVILLLRLGSRDAYDGPFGVILNRPLYTKMKHVNPSFRNQATPFSDCSLFFGGPVDMSI
FLMRTTDDRPIKGFEEVSPGVCFGFRTDLEKASALLKSGAVKPEDLNFYVGYSAWDYDQL
LSEIDQGYWHVTSCSSGLISDSLATDPSCLWTEILKLMGGQYAELSQKPKEDGS

Transcript Sequence

Transcript ID

Os01t0886000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38491273:38494120:-1 gene:Os01g0886000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF179 family protein. (Os01t0886000-01)
Sequence

CAACCCCCCTCGCGGCCACCGACATGTGGGCCCTCACCCCAAACAGCGGTGGGTCCTCCT
GCCTCCCGGCGAGGCGCACCCCGCCGCCGCTCGCCGCCGCCGGCGAGGCCGGCTCGCTGG
CCGCGGGGCCCGGGAGGTGGTGCTCGTGGAGGCGTCGTCAGCCGGCGGAGCGGTGGCCCA
AGCTGGCGGTCAGCGCGTCAGGGAGGAAGAGCAAGGGCGGCCGCGACGAGGGCGGCGGCG
ACGAGCCCAAGAAGAACAAGGCGGCGTCCTCCTCCTCCTCCGGAAAAGGTGATGCGTCTG
CTCCCAGTGGAGATGTTTCAAATAATGAACTGCAATCCAATGACACAATGTATGTACCTG
GTAACTTGTCATATTGGAGAGACGTTAGAGCAAGCTTTGTGGTTCCAAAGGTGCAAACAG
TAGATGCACATACTCTACCACAAGCAGCTACGGATGCACCAGTGCACTGTCTTCCTCGGA
AGTGGGCACATTCTATTCCAATGCCAGAATCTGGTTGTGTGCTGGTTGCTGCTGAAGAGC
TTGATGGCAATGGTACGTTTGAGAGAACTGTAATTCTCCTCCTAAGATTAGGTTCAAGAG
ATGCCTATGACGGCCCATTTGGCGTCATCCTAAACCGTCCACTGTATACAAAAATGAAAC
ACGTGAACCCATCGTTCCGCAACCAGGCAACCCCTTTTAGTGATTGCTCCCTCTTCTTTG
GGGGACCTGTCGACATGAGCATATTCTTGATGAGGACTACCGATGACAGACCAATTAAGG
GGTTCGAAGAGGTGTCGCCAGGCGTCTGCTTCGGTTTCAGGACTGACCTAGAGAAGGCCA
GTGCTCTTTTGAAGAGTGGCGCGGTTAAGCCTGAGGACTTAAACTTCTATGTTGGGTACT
CTGCCTGGGATTACGACCAGTTGTTGAGCGAGATTGATCAAGGATACTGGCATGTCACTT
CCTGTAGCTCAGGCCTGATAAGCGACTCCCTTGCAACAGATCCTTCTTGCCTATGGACTG
AGATATTGAAGCTGATGGGAGGCCAGTACGCAGAACTGAGTCAAAAGCCAAAGGAAGATG
GCTCGTGAAAATTCTTGCTTGCTAGCATAGTTTGGCACAATTGACGTGCTTGGTTTGTAC
ATAATTGGGAATAATCTCGCCCGGTCACTGGCCAGGGTAATTGAACAGTCCTAGTAGTAG
TTTCATGTGGTCGTCTTTGTCCTCTGTATTACTTGAACAAATATTATGGAGTACTGGTGA
TAGAACGGTGTGGGCTGTGAATAATTACTGGAATTACATGCTTCCATCAATTTTCTATGT
GCCACATAAAAATCCGAAATTGAGAT