Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0885500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:38472228:38475218:-1 gene:Os01g0885500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os01t0885500-01);Hypothetical protein. (Os01t0885500-03)
Sequence

ATGGAGAAGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGCGGAGGCGAGTAGAAAGAAG
GGAGAACGCGGATTAGGGGAGGGGGAATGCGGGGCGCCGAGTAGCAAGAAGAGAGACCCC
GAATTGGAGTTGCGCATGAAGCAGAAGGCGGCGGAGTGGCACAGGAAGGCGAGGGAGGAG
ACCCTGAAGGAGATAGCCAAGGAGATGGCCAAGTACCCCAACGAAGACTGGTCCGACACA
CCGGGCGTCAAGGCTCGCGAGTACCGCGAGGACTGGGAATACCGTTGGTCCGCCATCTTC
GGTCCCTACGACACAATCTCGCCTATACCACCCATGCGCTATACACACCGTAAGGACGAC
TCTATGCCGAGACATATTTCAGTCCGTCACACTCTGCAGATCATCTCGGTCAAAATAAAG
GGAATAAGAGGGGGCTTACAGTGGCCGATCAATGTGTTTGGTCTCATTGCTGCGCGCGAC
ACGATTGACCGCAACCGCATTATGATCTTCAACCGCACCAGGGATAACTGCCAAACAATT
ACTAAAGAGGATCGATATTTATTACTGACAGGTCCTACGCGTGCTGTTGTGGTATCTGAC
CCTGTGTATTTTGAGGCCCCGCTGAAAGTGAAGGGCTCTGTCGAATCTGAGGATAAAGAT
TTAAGCTTTTTAGCTGTCCCGCTCACCGGTGCTTCTGATAGAGGTGAAACGCGCTTGGTT
AATAGAGAGTACACTAGCAGGCTTAGCACGCTGGAGTTGACATTTGGCTTTGTTGTTGAG
TCCTTGGAGGCCTCAATCAGTGTGCGTATCATTGATGGGTCATGGAAAGATGGTTTTCGT
GGTGCATTCACTGCCCATACCCCCAGTCTAAAAGACAATAAAGTCCTGCTGCTTGATTCT
GGATATTGTGAGATGGTGCCTGTTACTGCTGATCGCATGATCAAGCTTTCACGCCATGTT
GTTTCCGTGGAAGGTGAGGGAGACCTGACCGTTTCAGTGCTGGCACTTGGAACTGATAAT
GTGATAGAAGATGAGAAGGATTTCACGCCTAAGGAAGCCGGTATGAGCCAGAGCTCTCTT
GACGTGGGCTTTTGTAAATTGGAAGTAACTGTCAACTGGTCACTTCTTTCCTTGCTTCCT
GATGGCTATACTTAA

Peptide Sequence

PEP ID

Os01t0885500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:38472228:38475218:-1 gene:Os01g0885500 transcript:Os01t0885500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os01t0885500-01);Hypothetical protein. (Os01t0885500-03)
Sequence

MEKEVEEEEEEEEAEASRKKGERGLGEGECGAPSSKKRDPELELRMKQKAAEWHRKAREE
TLKEIAKEMAKYPNEDWSDTPGVKAREYREDWEYRWSAIFGPYDTISPIPPMRYTHRKDD
SMPRHISVRHTLQIISVKIKGIRGGLQWPINVFGLIAARDTIDRNRIMIFNRTRDNCQTI
TKEDRYLLLTGPTRAVVVSDPVYFEAPLKVKGSVESEDKDLSFLAVPLTGASDRGETRLV
NREYTSRLSTLELTFGFVVESLEASISVRIIDGSWKDGFRGAFTAHTPSLKDNKVLLLDS
GYCEMVPVTADRMIKLSRHVVSVEGEGDLTVSVLALGTDNVIEDEKDFTPKEAGMSQSSL
DVGFCKLEVTVNWSLLSLLPDGYT

Transcript Sequence

Transcript ID

Os01t0885500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38472228:38475218:-1 gene:Os01g0885500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os01t0885500-01);Hypothetical protein. (Os01t0885500-03)
Sequence

GGTTTACAGCATCTGCGGCGAGATGGAGAAGGAGGTAGAGGAGGAGGAGGAGGAGGAGGA
GGCGGAGGCGAGTAGAAAGAAGGGAGAACGCGGATTAGGGGAGGGGGAATGCGGGGCGCC
GAGTAGCAAGAAGAGAGACCCCGAATTGGAGTTGCGCATGAAGCAGAAGGCGGCGGAGTG
GCACAGGAAGGCGAGGGAGGAGACCCTGAAGGAGATAGCCAAGGAGATGGCCAAGTACCC
CAACGAAGACTGGTCCGACACACCGGGCGTCAAGGCTCGCGAGTACCGCGAGGACTGGGA
ATACCGTTGGTCCGCCATCTTCGGTCCCTACGACACAATCTCGCCTATACCACCCATGCG
CTATACACACCGTAAGGACGACTCTATGCCGAGACATATTTCAGTCCGTCACACTCTGCA
GATCATCTCGGTCAAAATAAAGGGAATAAGAGGGGGCTTACAGTGGCCGATCAATGTGTT
TGGTCTCATTGCTGCGCGCGACACGATTGACCGCAACCGCATTATGATCTTCAACCGCAC
CAGGGATAACTGCCAAACAATTACTAAAGAGGATCGATATTTATTACTGACAGGTCCTAC
GCGTGCTGTTGTGGTATCTGACCCTGTGTATTTTGAGGCCCCGCTGAAAGTGAAGGGCTC
TGTCGAATCTGAGGATAAAGATTTAAGCTTTTTAGCTGTCCCGCTCACCGGTGCTTCTGA
TAGAGGTGAAACGCGCTTGGTTAATAGAGAGTACACTAGCAGGCTTAGCACGCTGGAGTT
GACATTTGGCTTTGTTGTTGAGTCCTTGGAGGCCTCAATCAGTGTGCGTATCATTGATGG
GTCATGGAAAGATGGTTTTCGTGGTGCATTCACTGCCCATACCCCCAGTCTAAAAGACAA
TAAAGTCCTGCTGCTTGATTCTGGATATTGTGAGATGGTGCCTGTTACTGCTGATCGCAT
GATCAAGCTTTCACGCCATGTTGTTTCCGTGGAAGGTGAGGGAGACCTGACCGTTTCAGT
GCTGGCACTTGGAACTGATAATGTGATAGAAGATGAGAAGGATTTCACGCCTAAGGAAGC
CGGTATGAGCCAGAGCTCTCTTGACGTGGGCTTTTGTAAATTGGAAGTAACTGTCAACTG
GTCACTTCTTTCCTTGCTTCCTGATGGCTATACTTAATTAAGTACATTGCACAGTGGTAT
GTGAATTGTGATGTTCCTTTGGATCTGTTGCTTCTGAACTTCTGAAATGGGGTGTTGGTT
TTTTTTTCTTTTGTTTACTAGCTAGAATAGCGAACTCTTGATGGACGCGGTATCCTGTGT
ATAGAATGTTGGCAGTATTGCCACCGCTACGG