Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0883800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:38382385:38385469:1 gene:Os01g0883800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SEMIDWARF 1 description:Similar to GA C20oxidase2. (Os01t0883800-01);GA 20-oxidase2, GA metabolism (Os01t0883800-02)
Sequence

CACACACACACACTCACACTCACACACGCTCTCAACTCACTCCCGCTCAACACAGCGCTC
ACTTCTCATCTCCAATCTCATGGTGGCCGAGCACCCCACGCCACCACAGCCGCACCAACC
ACCGCCCATGGACTCCACCGCCGGCTCTGGCATTGCCGCCCCGGCGGCGGCGGCGGTGTG
CGACCTGAGGATGGAGCCCAAGATCCCGGAGCCATTCGTGTGGCCGAACGGCGACGCGAG
GCCGGCGTCGGCGGCGGAGCTGGACATGCCCGTGGTCGACGTGGGCGTGCTCCGCGACGG
CGACGCCGAGGGGCTGCGCCGCGCCGCGGCGCAGGTGGCCGCCGCGTGCGCCACGCACGG
GTTCTTCCAGGTTACTGCGAGGAGATGAAGGAGCTGTCGCTGACGATCATGGAACTCCTG
GAGCTGAGCCTGGGCGTGGAGCGAGGCTACTACAGGGAGTTCTTCGCGGACAGCAGCTCA
ATCATGCGGTGCAACTACTACCCGCCATGCCCGGAGCCGGAGCGGACGCTCGGCACGGGC
CCGCACTGCGACCCCACCGCCCTCACCATCCTCCTCCAGGACGACGTCGGCGGCCTCGAG
GTCCTCGTCGACGGCGAATGGCGCCCCGTCAGCCCCGTCCCCGGCGCCATGGTCATCAAC
ATCGGCGACACCTTCATGGCGCTGTCGAACGGGAGGTATAAGAGCTGCCTGCACAGGGCG
GTGGTGAACCAGCGGCGGGAGCGGCGGTCGCTGGCGTTCTTCCTGTGCCCGCGGGAGGAC
AGGGTGGTGCGGCCGCCGCCGAGCGCCGCCACGCCGCAGCACTACCCGGACTTCACCTGG
GCCGACCTCATGCGCTTCACGCAGCGCCACTACCGCGCCGACACCCGCACGCTCGACGCC
TTCACGCGCTGGCTCGCGCCGCCGGCCGCCGACGCCGCCGCGACGGCGCAGGTCGAGGCG
GCCAGCTGA

Peptide Sequence

PEP ID

Os01t0883800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:38382385:38385469:1 gene:Os01g0883800 transcript:Os01t0883800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SEMIDWARF 1 description:Similar to GA C20oxidase2. (Os01t0883800-01);GA 20-oxidase2, GA metabolism (Os01t0883800-02)
Sequence

HTHTLTLTHALNSLPLNTALTSHLQSHGGRAPHATTAAPTTAHGLHRRLWHCRPGGGGGV
RPEDGAQDPGAIRVAERRREAGVGGGAGHARGRRGRAPRRRRRGAAPRRGAGGRRVRHAR
VLPGYCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTG
PHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRA
VVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDFTWADLMRFTQRHYRADTRTLDA
FTRWLAPPAADAAATAQVEAAS

Transcript Sequence

Transcript ID

Os01t0883800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38382385:38385469:1 gene:Os01g0883800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SEMIDWARF 1 description:Similar to GA C20oxidase2. (Os01t0883800-01);GA 20-oxidase2, GA metabolism (Os01t0883800-02)
Sequence

CACACACACACACACTCACACTCACACACGCTCTCAACTCACTCCCGCTCAACACAGCGC
TCACTTCTCATCTCCAATCTCATGGTGGCCGAGCACCCCACGCCACCACAGCCGCACCAA
CCACCGCCCATGGACTCCACCGCCGGCTCTGGCATTGCCGCCCCGGCGGCGGCGGCGGTG
TGCGACCTGAGGATGGAGCCCAAGATCCCGGAGCCATTCGTGTGGCCGAACGGCGACGCG
AGGCCGGCGTCGGCGGCGGAGCTGGACATGCCCGTGGTCGACGTGGGCGTGCTCCGCGAC
GGCGACGCCGAGGGGCTGCGCCGCGCCGCGGCGCAGGTGGCCGCCGCGTGCGCCACGCAC
GGGTTCTTCCAGGTTACTGCGAGGAGATGAAGGAGCTGTCGCTGACGATCATGGAACTCC
TGGAGCTGAGCCTGGGCGTGGAGCGAGGCTACTACAGGGAGTTCTTCGCGGACAGCAGCT
CAATCATGCGGTGCAACTACTACCCGCCATGCCCGGAGCCGGAGCGGACGCTCGGCACGG
GCCCGCACTGCGACCCCACCGCCCTCACCATCCTCCTCCAGGACGACGTCGGCGGCCTCG
AGGTCCTCGTCGACGGCGAATGGCGCCCCGTCAGCCCCGTCCCCGGCGCCATGGTCATCA
ACATCGGCGACACCTTCATGGCGCTGTCGAACGGGAGGTATAAGAGCTGCCTGCACAGGG
CGGTGGTGAACCAGCGGCGGGAGCGGCGGTCGCTGGCGTTCTTCCTGTGCCCGCGGGAGG
ACAGGGTGGTGCGGCCGCCGCCGAGCGCCGCCACGCCGCAGCACTACCCGGACTTCACCT
GGGCCGACCTCATGCGCTTCACGCAGCGCCACTACCGCGCCGACACCCGCACGCTCGACG
CCTTCACGCGCTGGCTCGCGCCGCCGGCCGCCGACGCCGCCGCGACGGCGCAGGTCGAGG
CGGCCAGCTGATCGCCGAACGGAACGAAACGGAACGAACAGAAGCCGATTTTTGGCGGGG
CCCACGCCCACGTGAGGCCCCACGTGGACAGTGGGCCCGGGCGGAGGTGGCACCCACGTG
GACCGCGGGCCCCGCGCCGCCTTCCAATTTTGGACCCTACCGCTGTACATATTCATATAT
TGCAAGAAGAAGCAAAACGTACGTGTGGGTTGGGTTGGGCTTCTCTCTATTACTAAAAAA
AATATAATGGAACGACGGATGAATGGATGCTT