Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0880900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:38226425:38228440:-1 gene:Os01g0880900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pentatricopeptide repeat protein PPR868-14. (Os01t0880900-01)
Sequence

ATGGCGGCTAGCCGAGCGAGGCAACTCCACGCTCTCTACCTGACGAGAGGATGCCGTGAC
CCAGACATGTGGGCCAACCTCGCCAAGGTCTACGCCTCCAACTCCTTCCTCCGGGAGGCC
GCTATCATCTACTCGAAACTACTGCCCCATCGTACTCACCACCTGCCCCTTGTCATCGTC
CTCCTCAAGGCAACCGCCTCCCGCGCGGATCCCGTCCTCGGCAGGGCCCTCCACGCGGAG
GCCGTGAAATCCGCCAACGCCCACGACCGCCTCGTGGGGACGACGCTGGTGTCCGTGTAC
TGCAAGTGCGGCCTCCTGGCCGACGCGCGCAGGGTGTTCGACGGAATGCTGGACCGGAAC
GCCGTGACGTGCAACGCCATGCTCGCCGGGTACGCGGCGGCGGGAGACATGGTGAGCGCG
GAGGCGCTGTTCGCCGGCATGGGCTCACGGACTCCCGTCACGTGGGCAACGCTGATCCGG
GGGTTCGCGGGGAAGGGCGACATGGCGGAAACGCGGCGGTGGTTTGAGGCCATGCCGCTG
GGCATGCAGAACGTCGTCACGTGGACCGTGGCCGTGCAGGCCTACGTTGCCGCGGGGGAC
ATGGAGACCGCGAGGGAGCTGTTCAACAAGATGCCTGCGCGGAACGCGTTTGTGTGGTCG
TCGATGGTCACCGGGAACTTCAAGGCTGGCAATGCCGACGAAGCGCAAGCGGTGTTCGAC
AAAATCCCCGTGCGCAACTTGGTGAACTGGAACGCACTAATAGCAGGGTATGCCAAAATG
GGATGCTGCGAGAAGGCACTGGAAGCATTTCACTCCATGCTAAAGGACAAGATCAAGCCG
GACGAGTTCACCATGGCAGGTGTTCTCTCTGCCTGCGCACAGCTCGGTTCGCTAGAGCAA
GCGAGAAAGGTTCACAATTTCATCATCCAGCACCGTATCCGGAAGAACCAGTTCGTTATG
AATGGCCTGGTTGACATGTTCGCCAAGTGCGGTGACCTCGCTTTCGCACGAAATATCTTC
GACAACATGCAATGGAGGAACACCGAATGCTGGAACTCGATGATCTCTGCACTTTCCAGC
CATGGACAGAGCATTGAGGCTATTCGGTTGTTCTCCAAGATGGAGTGTTCGGAGCAGAAG
CCTAATGAGATCACACTTCTTGCCGTACTCGGAGCTTGCACACACGGAGGATTTGTAGAT
GAAGGACTAAGAATCTTCAGCAAATTCGATATTTACGGGGTTGCTGCTGCAGTAGAGCAT
TACGGCTGCCTGGTTGATCTCTTGGGCCGTTCTGGAAGATTGAGGGAAGCTTATGAGATT
GTCAAGAACATGCTTGTTGAACCCAATGAGGTGATCTGGGGCTCCCTGCTCGGAGCTTGC
AGGGTGCATGGCGATGCAGAGATGTCTGAACTCGTATCAAGTGAGATCCACCAATTGCAC
TCCCGTCGTGTGTCAACCAACGATGCAGAGTACATCTTGCTGTCAAATATCATGGCCTCG
TCGGAGAGGTGGGAGCAGGCTGAACGCATGAGGAGAAAGATGGCGCTCCATGGAGTTGGG
AAGACCCCAGGGTGCAGTTCAGTGGAGCTCGAGATTACTGAACACCAAGTATGTGCAGGC
AGTGGTACGTTATCCCAGCTACACTGA

Peptide Sequence

PEP ID

Os01t0880900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:38226425:38228440:-1 gene:Os01g0880900 transcript:Os01t0880900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pentatricopeptide repeat protein PPR868-14. (Os01t0880900-01)
Sequence

MAASRARQLHALYLTRGCRDPDMWANLAKVYASNSFLREAAIIYSKLLPHRTHHLPLVIV
LLKATASRADPVLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRN
AVTCNAMLAGYAAAGDMVSAEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMPL
GMQNVVTWTVAVQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFD
KIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQ
ARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSS
HGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDIYGVAAAVEH
YGCLVDLLGRSGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQLH
SRRVSTNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVELEITEHQVCAG
SGTLSQLH

Transcript Sequence

Transcript ID

Os01t0880900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38226425:38228440:-1 gene:Os01g0880900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Pentatricopeptide repeat protein PPR868-14. (Os01t0880900-01)
Sequence

ACTGCCAGAATAGCAGAAATATTTTTGTTTGACACCCCGACGTTATATAAGCCCGCGAGC
CGCCGCCGCCGCCGCCGCTGCTAGGGCGGACGAGCGCTCGCCATGGCGGCTAGCCGAGCG
AGGCAACTCCACGCTCTCTACCTGACGAGAGGATGCCGTGACCCAGACATGTGGGCCAAC
CTCGCCAAGGTCTACGCCTCCAACTCCTTCCTCCGGGAGGCCGCTATCATCTACTCGAAA
CTACTGCCCCATCGTACTCACCACCTGCCCCTTGTCATCGTCCTCCTCAAGGCAACCGCC
TCCCGCGCGGATCCCGTCCTCGGCAGGGCCCTCCACGCGGAGGCCGTGAAATCCGCCAAC
GCCCACGACCGCCTCGTGGGGACGACGCTGGTGTCCGTGTACTGCAAGTGCGGCCTCCTG
GCCGACGCGCGCAGGGTGTTCGACGGAATGCTGGACCGGAACGCCGTGACGTGCAACGCC
ATGCTCGCCGGGTACGCGGCGGCGGGAGACATGGTGAGCGCGGAGGCGCTGTTCGCCGGC
ATGGGCTCACGGACTCCCGTCACGTGGGCAACGCTGATCCGGGGGTTCGCGGGGAAGGGC
GACATGGCGGAAACGCGGCGGTGGTTTGAGGCCATGCCGCTGGGCATGCAGAACGTCGTC
ACGTGGACCGTGGCCGTGCAGGCCTACGTTGCCGCGGGGGACATGGAGACCGCGAGGGAG
CTGTTCAACAAGATGCCTGCGCGGAACGCGTTTGTGTGGTCGTCGATGGTCACCGGGAAC
TTCAAGGCTGGCAATGCCGACGAAGCGCAAGCGGTGTTCGACAAAATCCCCGTGCGCAAC
TTGGTGAACTGGAACGCACTAATAGCAGGGTATGCCAAAATGGGATGCTGCGAGAAGGCA
CTGGAAGCATTTCACTCCATGCTAAAGGACAAGATCAAGCCGGACGAGTTCACCATGGCA
GGTGTTCTCTCTGCCTGCGCACAGCTCGGTTCGCTAGAGCAAGCGAGAAAGGTTCACAAT
TTCATCATCCAGCACCGTATCCGGAAGAACCAGTTCGTTATGAATGGCCTGGTTGACATG
TTCGCCAAGTGCGGTGACCTCGCTTTCGCACGAAATATCTTCGACAACATGCAATGGAGG
AACACCGAATGCTGGAACTCGATGATCTCTGCACTTTCCAGCCATGGACAGAGCATTGAG
GCTATTCGGTTGTTCTCCAAGATGGAGTGTTCGGAGCAGAAGCCTAATGAGATCACACTT
CTTGCCGTACTCGGAGCTTGCACACACGGAGGATTTGTAGATGAAGGACTAAGAATCTTC
AGCAAATTCGATATTTACGGGGTTGCTGCTGCAGTAGAGCATTACGGCTGCCTGGTTGAT
CTCTTGGGCCGTTCTGGAAGATTGAGGGAAGCTTATGAGATTGTCAAGAACATGCTTGTT
GAACCCAATGAGGTGATCTGGGGCTCCCTGCTCGGAGCTTGCAGGGTGCATGGCGATGCA
GAGATGTCTGAACTCGTATCAAGTGAGATCCACCAATTGCACTCCCGTCGTGTGTCAACC
AACGATGCAGAGTACATCTTGCTGTCAAATATCATGGCCTCGTCGGAGAGGTGGGAGCAG
GCTGAACGCATGAGGAGAAAGATGGCGCTCCATGGAGTTGGGAAGACCCCAGGGTGCAGT
TCAGTGGAGCTCGAGATTACTGAACACCAAGTATGTGCAGGCAGTGGTACGTTATCCCAG
CTACACTGACTGCATTTTTTGCATGTCCCAAATGTTCTTCCGAAAGTGTTTTCACAAGTT
GCCCAGAAAAGAAAAGCCCCTCATGTGCTGGATATTCTATTAACTGTACTTCTTATACAT
AGATGATTAGACAAGGACATTAGATTATTAGACAAGGGAATTATCTGTTCTGTTGCATCC
CTTTATCAACTGGTGCTGGCATAGAAATAACTACACACTTCGTGTCAATTTTATATGCTA
ATATCAGTCAACAGGCACAATTGAATTATGTATTTG