Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0880800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:38224446:38225878:1 gene:Os01g0880800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase). (Os01t0880800-01)
Sequence

ATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGCGCGGTGGTGGCGCCCTCGCGC
CGGCAGTGCCGCGTGTCCGCGGCGGTGCTGACGGCCGCGGAGACGGCGACGGCGACGCGG
CGCCGCGTGACGCACTCGATGCCGCCGGAGAAGGCGGAGGTGTTCCGGTCGCTGGAAGGG
TGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGCTGGCAGCCGACG
GACTTCCTGCCGGACTCGTCGTCGGAGATGTTCGAGCACCAGGTCCACGAGCTCCGCGCG
CGCGCCGCGGGGCTCCCCGACGAGTACTTCGTCGTGCTGGTCGGGGACATGATTACCGAG
GAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACGGCGTCCGCGACGAGACC
GGCGCCAGCGCCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCGCCGAGGAGAACCGC
CACGGCGACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGTCGACATGCGCATGGTC
GAGAAGACCGTCCAGTACCTCATCGGCTCCGGCATGGATCCGGGGACGGAGAACAACCCG
TACCTGGGGTTCGTGTACACCAGCTTCCAGGAGCGCGCGACGGCCGTGTCGCACGGGAAC
ACGGCGCGCCTCGCCAGGGCGCACGGGGACGACGTCCTGGCGCGCACCTGCGGCACCATC
GCCGCCGACGAGAAGCGGCACGAGACGGCGTACGGGCGCATCGTGGAGCAGCTGCTGCGG
CTCGACCCGGACGGCGCCATGCTCGCCATCGCCGACATGATGCACAAGCGGATCACCATG
CCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCGACCACTTCGCCGCCGTG
GCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTCGAGTTCCTCGTC
AAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGCCGGAGGGCCCGG
GACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGGGCTGAGGACAGG
GCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGATAGGGAAGTGATT
GTCTAG

Peptide Sequence

PEP ID

Os01t0880800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:38224446:38225878:1 gene:Os01g0880800 transcript:Os01t0880800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase). (Os01t0880800-01)
Sequence

MQVVGTVRVSGCGAVVAPSRRQCRVSAAVLTAAETATATRRRVTHSMPPEKAEVFRSLEG
WARSSLLPLLKPVEECWQPTDFLPDSSSEMFEHQVHELRARAAGLPDEYFVVLVGDMITE
EALPTYQTMINTLDGVRDETGASACPWAVWTRTWTAEENRHGDILGKYMYLSGRVDMRMV
EKTVQYLIGSGMDPGTENNPYLGFVYTSFQERATAVSHGNTARLARAHGDDVLARTCGTI
AADEKRHETAYGRIVEQLLRLDPDGAMLAIADMMHKRITMPAHLMHDGRDMNLFDHFAAV
AQRLNVYTARDYADIVEFLVKRWKLETLETGLSGEGRRARDFVCGLAKRMRRAAERAEDR
AKKDEQRKVKFSWIYDREVIV

Transcript Sequence

Transcript ID

Os01t0880800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38224446:38225878:1 gene:Os01g0880800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase). (Os01t0880800-01)
Sequence

GAAAGGCAGAAGAAATCAAGAAACCAACCACCAACTAGCTACTGTAGTTGACTGACAGTG
ATAGTGGCAGTCATGCAGGTCGTGGGAACCGTGCGTGTCAGTGGCTGCGGCGCGGTGGTG
GCGCCCTCGCGCCGGCAGTGCCGCGTGTCCGCGGCGGTGCTGACGGCCGCGGAGACGGCG
ACGGCGACGCGGCGCCGCGTGACGCACTCGATGCCGCCGGAGAAGGCGGAGGTGTTCCGG
TCGCTGGAAGGGTGGGCGAGGTCGTCGCTGCTGCCGCTGCTCAAGCCCGTGGAGGAGTGC
TGGCAGCCGACGGACTTCCTGCCGGACTCGTCGTCGGAGATGTTCGAGCACCAGGTCCAC
GAGCTCCGCGCGCGCGCCGCGGGGCTCCCCGACGAGTACTTCGTCGTGCTGGTCGGGGAC
ATGATTACCGAGGAGGCGCTGCCGACGTACCAGACCATGATCAACACGCTCGACGGCGTC
CGCGACGAGACCGGCGCCAGCGCCTGCCCCTGGGCCGTCTGGACGCGCACCTGGACCGCC
GAGGAGAACCGCCACGGCGACATCCTCGGCAAGTACATGTACCTCTCCGGCCGCGTCGAC
ATGCGCATGGTCGAGAAGACCGTCCAGTACCTCATCGGCTCCGGCATGGATCCGGGGACG
GAGAACAACCCGTACCTGGGGTTCGTGTACACCAGCTTCCAGGAGCGCGCGACGGCCGTG
TCGCACGGGAACACGGCGCGCCTCGCCAGGGCGCACGGGGACGACGTCCTGGCGCGCACC
TGCGGCACCATCGCCGCCGACGAGAAGCGGCACGAGACGGCGTACGGGCGCATCGTGGAG
CAGCTGCTGCGGCTCGACCCGGACGGCGCCATGCTCGCCATCGCCGACATGATGCACAAG
CGGATCACCATGCCCGCGCACCTCATGCACGACGGCCGCGACATGAACCTGTTCGACCAC
TTCGCCGCCGTGGCGCAGCGCCTCAACGTCTACACCGCGCGCGACTACGCCGACATCGTC
GAGTTCCTCGTCAAGCGGTGGAAGCTGGAGACCCTGGAGACTGGGCTCTCCGGCGAGGGC
CGGAGGGCCCGGGACTTCGTGTGCGGGCTCGCGAAGAGGATGCGGCGGGCCGCGGAGCGG
GCTGAGGACAGGGCTAAGAAGGATGAGCAGAGGAAGGTCAAGTTCAGCTGGATCTATGAT
AGGGAAGTGATTGTCTAGTTTAACTTGTCTTGGTTGAATTCTGAATTCCCAGTCCTAGAT
GATCATGCCATTTCGTTATCATCTCTGTTCTTGTGTTCTCTTTGCAATGCAGTAAATTGG
TAATAGTTAATGGTGCTTTGATCTTGG