Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0878700-03
CDS Infomation

cds chromosome:IRGSP-1.0:1:38133571:38137710:-1 gene:Os01g0878700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:amino acid permease 10D, amino acid permease 6, amino acid/auxin permease 6, quantitative trait locus (QTL) for GPC (grain protein content) on chromosome 1 description:Amino acid transporter, transmembrane domain containing protein. (Os01t0878700-02);Amino acid transporter, transmembrane domain containing protein. (Os01t0878700-03)
Sequence

ATGGACGTGGAGAAGGTGGAGAGGAAGGAGGTGGCCGTCGACGACGATGGCCGCGTCAGA
ACAGGAACGGTATGGACGGCGACGACGCACGCCATCACCGCCGTGATCGGGTCAGGCGTG
CTGGCGCTGCCGTGGAGCGTGGCCCAGATGGGGTGGGTGCTCGGCCCCATCGCCCTCGTC
GTCTGCGCCTACATCACCTACTACACCGCCGTCCTCCTCTGCGACTGCTACCGCACGCCG
GACCCCGTCCACGGCAAGCGGAACTACACCTACATGGACGTCGTCCGCTCATGCCTCGGG
CCTCGAGACGTGGTCGTGTGTGGCATTGCGCAGTACGCGATTCTCTGGGGCGCAATGGTG
GGTTACACCATCACGACCGCTACGAGCATCATGTCAGTGGTGCGCACGAACTGCCACCAC
TACAAGGGGCCGGACGCGACCTGCGGCTCGTCCGGGACGATGTACATGGTGCTGTTCGGC
CTCGCGGAGGTCGTCCTGTCCCAGTGCCCGAGCCTGGAGGGGGTGACGCTCATCTCCGTC
GTCGCCGCCGTCATGTCGTTCACCTACTCCTTCGTCGGGCTCTTCCTCAGCGCCGCTAAG
GTCGCGTCGCACGGCGCGGCGCACGGCACCCTCCTCGGCGTCAGGGTCGGCGCCGGAGGC
GTCACCGCGTCGACCAAGGCGTGGCACTTCCTGCAGGCGCTCGGGAACATCGCCTTCGCG
TACACCTACTCCATGCTGCTCATCGAGATCCAGGACACGGTGAAGTCGCCGCCGTCGGAG
AACGTGACGATGAAGAGGGCGAGCCTGTACGGCATCGGCGTCACGACCGTCTTCTACGTG
TCGATCGGGTGCGTCGGGTACGCGGCGTTCGGCAACGCCGCGCCCGGGAACGTCCTCACC
GGCTTCCTCGAGCCGTTCTGGCTCGTCGACATCGCCAACGTTGCCGTCGTCATCCACCTG
GTCGGAGCGTACCAGGTGTACGCGCAGCCGGTGTTCGCGTGCTACGAGAAGTGGCTGGCG
AGCCGTTGGCCGGAGTCGGCGTTCTTCCACCGGGAGTACGCGGTGCCGCTGGGCGGCGGG
CGCGCGGTGCGGTTCACGCTGTGCAAGCTGGTGCTGCGCACGGCGTTCGTGGCCGTGACG
ACGGTGGTGTCGCTGGTGCTGCCGTTCTTCAACGCCGTGCTCGGGCTGCTCGGCGCCGTC
GCGTTCTGGCCGCTCACGGTGTACTTCCCGGTGACCATGTACATGGCGCAGGCGAAGGTG
CAGAGAGGCAGCCGGAAGTGGGTGGCGCTGCAGGCGCTCAACGTCGGCGCGCTCGTCGTG
TCGCTGCTCGCGGCGGTGGGCTCGGTGGCCGACATGGCGCAGCGCCTGCGCCACGTCACC
ATCTTCCAAACGCAGCTCTGA

Peptide Sequence

PEP ID

Os01t0878700-03
PEP Infomation

pep chromosome:IRGSP-1.0:1:38133571:38137710:-1 gene:Os01g0878700 transcript:Os01t0878700-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:amino acid permease 10D, amino acid permease 6, amino acid/auxin permease 6, quantitative trait locus (QTL) for GPC (grain protein content) on chromosome 1 description:Amino acid transporter, transmembrane domain containing protein. (Os01t0878700-02);Amino acid transporter, transmembrane domain containing protein. (Os01t0878700-03)
Sequence

MDVEKVERKEVAVDDDGRVRTGTVWTATTHAITAVIGSGVLALPWSVAQMGWVLGPIALV
VCAYITYYTAVLLCDCYRTPDPVHGKRNYTYMDVVRSCLGPRDVVVCGIAQYAILWGAMV
GYTITTATSIMSVVRTNCHHYKGPDATCGSSGTMYMVLFGLAEVVLSQCPSLEGVTLISV
VAAVMSFTYSFVGLFLSAAKVASHGAAHGTLLGVRVGAGGVTASTKAWHFLQALGNIAFA
YTYSMLLIEIQDTVKSPPSENVTMKRASLYGIGVTTVFYVSIGCVGYAAFGNAAPGNVLT
GFLEPFWLVDIANVAVVIHLVGAYQVYAQPVFACYEKWLASRWPESAFFHREYAVPLGGG
RAVRFTLCKLVLRTAFVAVTTVVSLVLPFFNAVLGLLGAVAFWPLTVYFPVTMYMAQAKV
QRGSRKWVALQALNVGALVVSLLAAVGSVADMAQRLRHVTIFQTQL

Transcript Sequence

Transcript ID

Os01t0878700-03
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38133571:38137710:-1 gene:Os01g0878700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:amino acid permease 10D, amino acid permease 6, amino acid/auxin permease 6, quantitative trait locus (QTL) for GPC (grain protein content) on chromosome 1 description:Amino acid transporter, transmembrane domain containing protein. (Os01t0878700-02);Amino acid transporter, transmembrane domain containing protein. (Os01t0878700-03)
Sequence

ACACAGAGAGAGTATGGACGTGGAGAAGGTGGAGAGGAAGGAGGTGGCCGTCGACGACGA
TGGCCGCGTCAGAACAGGAACGGTATGGACGGCGACGACGCACGCCATCACCGCCGTGAT
CGGGTCAGGCGTGCTGGCGCTGCCGTGGAGCGTGGCCCAGATGGGGTGGGTGCTCGGCCC
CATCGCCCTCGTCGTCTGCGCCTACATCACCTACTACACCGCCGTCCTCCTCTGCGACTG
CTACCGCACGCCGGACCCCGTCCACGGCAAGCGGAACTACACCTACATGGACGTCGTCCG
CTCATGCCTCGGGCCTCGAGACGTGGTCGTGTGTGGCATTGCGCAGTACGCGATTCTCTG
GGGCGCAATGGTGGGTTACACCATCACGACCGCTACGAGCATCATGTCAGTGGTGCGCAC
GAACTGCCACCACTACAAGGGGCCGGACGCGACCTGCGGCTCGTCCGGGACGATGTACAT
GGTGCTGTTCGGCCTCGCGGAGGTCGTCCTGTCCCAGTGCCCGAGCCTGGAGGGGGTGAC
GCTCATCTCCGTCGTCGCCGCCGTCATGTCGTTCACCTACTCCTTCGTCGGGCTCTTCCT
CAGCGCCGCTAAGGTCGCGTCGCACGGCGCGGCGCACGGCACCCTCCTCGGCGTCAGGGT
CGGCGCCGGAGGCGTCACCGCGTCGACCAAGGCGTGGCACTTCCTGCAGGCGCTCGGGAA
CATCGCCTTCGCGTACACCTACTCCATGCTGCTCATCGAGATCCAGGACACGGTGAAGTC
GCCGCCGTCGGAGAACGTGACGATGAAGAGGGCGAGCCTGTACGGCATCGGCGTCACGAC
CGTCTTCTACGTGTCGATCGGGTGCGTCGGGTACGCGGCGTTCGGCAACGCCGCGCCCGG
GAACGTCCTCACCGGCTTCCTCGAGCCGTTCTGGCTCGTCGACATCGCCAACGTTGCCGT
CGTCATCCACCTGGTCGGAGCGTACCAGGTGTACGCGCAGCCGGTGTTCGCGTGCTACGA
GAAGTGGCTGGCGAGCCGTTGGCCGGAGTCGGCGTTCTTCCACCGGGAGTACGCGGTGCC
GCTGGGCGGCGGGCGCGCGGTGCGGTTCACGCTGTGCAAGCTGGTGCTGCGCACGGCGTT
CGTGGCCGTGACGACGGTGGTGTCGCTGGTGCTGCCGTTCTTCAACGCCGTGCTCGGGCT
GCTCGGCGCCGTCGCGTTCTGGCCGCTCACGGTGTACTTCCCGGTGACCATGTACATGGC
GCAGGCGAAGGTGCAGAGAGGCAGCCGGAAGTGGGTGGCGCTGCAGGCGCTCAACGTCGG
CGCGCTCGTCGTGTCGCTGCTCGCGGCGGTGGGCTCGGTGGCCGACATGGCGCAGCGCCT
GCGCCACGTCACCATCTTCCAAACGCAGCTCTGAACCCGGATGGACGCATGCAGCCGATG
AGATTATGCATGTAGTACTACTCCTACTACTTTTGTTGCTGTACTCGTACTAGTTGCTGG
TGTAATTTGGCTGTCGTGTTACAAGCTACTACTACTAGTACAAGCCCCTCTGTTTTTATA
CCTCTGAATTTAGCAAATGGGACTTGAGGAGTATGGTT