Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0878300-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:38114866:38116960:1 gene:Os01g0878300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase, core domain containing protein. (Os01t0878300-01);Hypothetical conserved gene. (Os01t0878300-02)
Sequence

TCTGAGAATTATTTTTCTGGTGAATTTCCAAGGTTCCTGTGCCAAAACAACAAATTGCAG
TTCTTGTTGGCTTTGGACAACAACTTCTCAGGTGAATTCCCCAGCTCCTACTCTTCTTGC
AAAACACTTCAGAGGTTTAGAATAAGTCAAAATCAGTTCACTGGGAGAATTCACAGTGGC
ATATGGGGATTGCCTAATGCTGTGATCATCGATGTTGCCAACAATAAATTTGTTGGCGGC
ATATCCTCTGATATAGGCATTTCGGCTTCTCTGAACCAACTGTATGTTCATAATAACGTC
TTCTCTGGTGAACTTCCAATGGAGTTGGGGAAGCTTTCCCTGCTTCAGAAGCTTGTTGCT
TTCAACAATAGATTCTCTGGCCAAATCCCTGCACAGATTGGAAGTTTGAAGCAGCTGTCA
TTCCTGCACCTGGAACAAAATGCTCTGGAAGGATCGATACCACCTGATATTGGTATGTGC
AACAGCCTAGTTGATCTGAACCTTGCAGACAATTCTTTGACTGGCACCATTCCAGACACA
CTAGCATCTCTATTCACTCTGAATTCACTCAACCTATCTCACAACATGATCTCTGGTGAA
ATCCCTGAAGGATTGCAATATCTGAAGCTTAGTTATGTTGATTTCTCCCACAACAATTTA
TCTGGACCAGTCCCTCCAGCTCTCCTGATGATAGCTGGAGATGATGCATTCTCTGAAAAC
GACGGCCTTTGTATTGCTGGAGTTTCAGAAGGTTGGAGGCAAAATGCCACCAATTTAAGA
TACTGCCCGTGGAACGACAACCATCAGAACTTCTCGCAGAGAAGGCTATTTGTCGTGCTG
ATAATAGTGACATCTCTGGTGGTTCTCCTATCTGGGTTGGCATGCCTGAGATATGAAAAT
TACAAGCTTGAGCAGTTCCACAGCAAGGGAGACATCGAGAGCGGCGACGACAGTGACTCA
AAGTGGGTTCTTGAGTCCTTCCACCCCCCTGAGCTTGATCCTGAGGAGATTTGCAACTTG
GATGTGGACAATCTGATTGGCTGTGGAGGCACTGGCAAAGTTTATAGGCTTGAATTGAGC
AAAGGGAGGGGTGTTGTGGCCGTGAAGCAACTATGGAAGCGTGATGATGCAAAGGTCATG
AGAACTGAGATCAACACACTTGGGAAAATACGCCACCGGAACATCCTGAAACTCCATGCA
TTCTTGACCGGTGGGGAATCAAACTTTCTGGTGTATGAGTATGTGGTAAATGGCAATCTC
TACGATGCAATCCGCCGTGAGTTCAAGGCTGGGCAGCCGGAGCTGGACTGGGAGAAGCGG
TACCGGATTGCGGTTGGAACCGCAAAGGGCATCATGTATCTTCACCATGATTGCTCCCCG
GCCATAATCCACCGTGACATAAAATCCACCAATATACTGCTGGATGAGGAGTATGAAGCG
AAGCTTGCGGATTTCGGCATCGCCAAATTGGTGGAAGGTTCACCACTCAGCTGCTTCGCT
GGTACCCATGGCTACATGGCTCCTGCCCTTACCCATTCCTCTCAACCATCTCGCGGATGA

Peptide Sequence

PEP ID

Os01t0878300-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:38114866:38116960:1 gene:Os01g0878300 transcript:Os01t0878300-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase, core domain containing protein. (Os01t0878300-01);Hypothetical conserved gene. (Os01t0878300-02)
Sequence

SENYFSGEFPRFLCQNNKLQFLLALDNNFSGEFPSSYSSCKTLQRFRISQNQFTGRIHSG
IWGLPNAVIIDVANNKFVGGISSDIGISASLNQLYVHNNVFSGELPMELGKLSLLQKLVA
FNNRFSGQIPAQIGSLKQLSFLHLEQNALEGSIPPDIGMCNSLVDLNLADNSLTGTIPDT
LASLFTLNSLNLSHNMISGEIPEGLQYLKLSYVDFSHNNLSGPVPPALLMIAGDDAFSEN
DGLCIAGVSEGWRQNATNLRYCPWNDNHQNFSQRRLFVVLIIVTSLVVLLSGLACLRYEN
YKLEQFHSKGDIESGDDSDSKWVLESFHPPELDPEEICNLDVDNLIGCGGTGKVYRLELS
KGRGVVAVKQLWKRDDAKVMRTEINTLGKIRHRNILKLHAFLTGGESNFLVYEYVVNGNL
YDAIRREFKAGQPELDWEKRYRIAVGTAKGIMYLHHDCSPAIIHRDIKSTNILLDEEYEA
KLADFGIAKLVEGSPLSCFAGTHGYMAPALTHSSQPSRG

Transcript Sequence

Transcript ID

Os01t0878300-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38114866:38116960:1 gene:Os01g0878300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase, core domain containing protein. (Os01t0878300-01);Hypothetical conserved gene. (Os01t0878300-02)
Sequence

TCTGAGAATTATTTTTCTGGTGAATTTCCAAGGTTCCTGTGCCAAAACAACAAATTGCAG
TTCTTGTTGGCTTTGGACAACAACTTCTCAGGTGAATTCCCCAGCTCCTACTCTTCTTGC
AAAACACTTCAGAGGTTTAGAATAAGTCAAAATCAGTTCACTGGGAGAATTCACAGTGGC
ATATGGGGATTGCCTAATGCTGTGATCATCGATGTTGCCAACAATAAATTTGTTGGCGGC
ATATCCTCTGATATAGGCATTTCGGCTTCTCTGAACCAACTGTATGTTCATAATAACGTC
TTCTCTGGTGAACTTCCAATGGAGTTGGGGAAGCTTTCCCTGCTTCAGAAGCTTGTTGCT
TTCAACAATAGATTCTCTGGCCAAATCCCTGCACAGATTGGAAGTTTGAAGCAGCTGTCA
TTCCTGCACCTGGAACAAAATGCTCTGGAAGGATCGATACCACCTGATATTGGTATGTGC
AACAGCCTAGTTGATCTGAACCTTGCAGACAATTCTTTGACTGGCACCATTCCAGACACA
CTAGCATCTCTATTCACTCTGAATTCACTCAACCTATCTCACAACATGATCTCTGGTGAA
ATCCCTGAAGGATTGCAATATCTGAAGCTTAGTTATGTTGATTTCTCCCACAACAATTTA
TCTGGACCAGTCCCTCCAGCTCTCCTGATGATAGCTGGAGATGATGCATTCTCTGAAAAC
GACGGCCTTTGTATTGCTGGAGTTTCAGAAGGTTGGAGGCAAAATGCCACCAATTTAAGA
TACTGCCCGTGGAACGACAACCATCAGAACTTCTCGCAGAGAAGGCTATTTGTCGTGCTG
ATAATAGTGACATCTCTGGTGGTTCTCCTATCTGGGTTGGCATGCCTGAGATATGAAAAT
TACAAGCTTGAGCAGTTCCACAGCAAGGGAGACATCGAGAGCGGCGACGACAGTGACTCA
AAGTGGGTTCTTGAGTCCTTCCACCCCCCTGAGCTTGATCCTGAGGAGATTTGCAACTTG
GATGTGGACAATCTGATTGGCTGTGGAGGCACTGGCAAAGTTTATAGGCTTGAATTGAGC
AAAGGGAGGGGTGTTGTGGCCGTGAAGCAACTATGGAAGCGTGATGATGCAAAGGTCATG
AGAACTGAGATCAACACACTTGGGAAAATACGCCACCGGAACATCCTGAAACTCCATGCA
TTCTTGACCGGTGGGGAATCAAACTTTCTGGTGTATGAGTATGTGGTAAATGGCAATCTC
TACGATGCAATCCGCCGTGAGTTCAAGGCTGGGCAGCCGGAGCTGGACTGGGAGAAGCGG
TACCGGATTGCGGTTGGAACCGCAAAGGGCATCATGTATCTTCACCATGATTGCTCCCCG
GCCATAATCCACCGTGACATAAAATCCACCAATATACTGCTGGATGAGGAGTATGAAGCG
AAGCTTGCGGATTTCGGCATCGCCAAATTGGTGGAAGGTTCACCACTCAGCTGCTTCGCT
GGTACCCATGGCTACATGGCTCCTGCCCTTACCCATTCCTCTCAACCATCTCGCGGATGA
ATTCGCCATGCCGCTGCTCTCTTGCTCGGCCGCCGCCGCCGCGGCGCCACCTTGCGAGCA
GGTCGACCGCCGTCGGCGGCTGTGACGCGCATCGGCCACTCCACCCCCTTCTTCCCCGAC
AGGCGCCCCCCCCCTTCTACCACCGCCGCGGTGCTCGAGCTCCCACCTCCCTCCCATTCC
CTCCCCGCCTGCCGCCAGCAACCTCCCCTTCAACCACCGCCCGCCGCGGCCGTCGTAGTC
GACCGCTACTGGCCGCGCCATCCGCCGCCGCCATCCTCCAGTGCCTCCGATGCGGACGAA
TTTCTTGGCGATTAGCCGATTACATGCGGTGAATGAGTGGGAGTCCCACCGGGAATGGTC
AGGCTCATATGAAGATGGTATCTTTAGAAATAACTGAAAATAATTTATTAATAAACGTTT
AACT