Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0878000-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:38101549:38102991:-1 gene:Os01g0878000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0878000-01);Hypothetical conserved gene. (Os01t0878000-02)
Sequence

TTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTCAATTCAGGGAGGAC
AATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGACGTGCTGGTTGCAAC
CTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGAGGTCGAGGCCGTGG
CCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCGCAGCGGCGGACGCG
GGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGGACGCCATCTCGTTC
GGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGGCCATCTTCGAGCAC
CTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCCGCCCCGCGCGCCGC
CGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGGTACGTAGTACGTCG
CCAACCACTTACACAGAGCGAAATGATCCAATGTTGAGGTGTTTGCTGCTCTGA

Peptide Sequence

PEP ID

Os01t0878000-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:38101549:38102991:-1 gene:Os01g0878000 transcript:Os01t0878000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0878000-01);Hypothetical conserved gene. (Os01t0878000-02)
Sequence

FHQERHIKTVASFCIQFREDNLQGAGANLNSEGRRRAGCNLQEAKKRPRQAAMSGRSRPW
PGDPSPAPPQPPVVAAAADAGGEASTSLRDFGTSMDAISFGFAATAILVSMFLLMAIFEH
LIKPHVFPPLASAALRPARRRHGVSPAGKLRSPPMVRSTSPTTYTERNDPMLRCLLL

Transcript Sequence

Transcript ID

Os01t0878000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38101549:38102991:-1 gene:Os01g0878000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0878000-01);Hypothetical conserved gene. (Os01t0878000-02)
Sequence

GCAGCACTCCTTTTTGTTACTCCAAGCTTTTTCCTGTAGTTTTCTTCTCCTCTCTCCACA
TTGCCACCACCAAATCAGCTGAGATCTCACTTTTGATTCGGGGACTGTCTTTAAGTAGAG
GCAGCCAAGCTGAGATATCCTCCTGTGTGTTCTCCCGTTCTTGGCATTCGGCAATAGGTC
CCATGAAGCCATGATTCCATCAGGAGAGGCACATCAAGACGGTTGCTAGTTTCTGCATTC
AATTCAGGGAGGACAATTTGCAGGGTGCCGGTGCTAATCTGAACTCTGAAGGGAGGAGAC
GTGCTGGTTGCAACCTGCAAGAGGCCAAGAAGCGGCCGAGGCAGGCAGCAATGAGCGGGA
GGTCGAGGCCGTGGCCAGGGGACCCGTCGCCGGCGCCTCCGCAGCCGCCGGTCGTCGCCG
CAGCGGCGGACGCGGGCGGCGAGGCGTCGACGTCGCTCAGGGACTTCGGCACGTCGATGG
ACGCCATCTCGTTCGGGTTCGCGGCCACCGCCATCCTCGTCTCCATGTTCCTCCTCATGG
CCATCTTCGAGCACCTCATCAAGCCCCACGTCTTCCCGCCCCTCGCCAGCGCGGCGCTCC
GCCCCGCGCGCCGCCGCCACGGCGTCTCTCCCGCCGGCAAGCTCCGGAGCCCTCCCATGG
TACGTAGTACGTCGCCAACCACTTACACAGAGCGAAATGATCCAATGTTGAGGTGTTTGC
TGCTCTGAAATTGTTGCAGGTGGAGACGGTGCTGCAGGCGGCGGACCTGTCGGTGTTGAT
GCCGGGGCAACGGTACCCGACGTACCTGGCGCAGCCGGCGCCGCTTCCGCCGGCGCCGTG
CCCGAGGGAAGGGGTGCACTGGCCGCCGCACGACCACGACGTCCACCACTCCTACATGCC
GCCATGATCGAGATCTCGCGTACAATGTTGCAGTGGAACAACATGTTAGAGACACACGCT
GTCAAACCAACCAACCGACCGATCGATCGATGGATCGAATCCTGTTGCTGATTGAATTGC
TGTATAGCGGAGACGCTGTAAATAATAAACGCAGGGGAGAGTGACAAGAGTTGTTGGATA
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