Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0877500-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:38083446:38084945:1 gene:Os01g0877500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0877500-01);Hypothetical conserved gene. (Os01t0877500-02)
Sequence

TTCTCACATCGCCAGCCCATTCGGACCCCTCTGCAGAACACGATTGCTCTGTACTGGGCA
CTCTCTGATCGCCAGCTTGTGACTGTTCGGGACCTCTTCCGGTTCATAATGCACCTGCTT
CATCAAGCACGCAAGAAGAACGAGACATCAAAACCCACAACTGATGAACACAAAGAAGTT
GCATCTAATGTGCTCTGCAAGTGGACAAAGGAAGATATTGATCGGGCAGAAACTGCAATG
CTCAAGGTCCTACGGGTTGTTCAGCCTGGACAGTGGGTATCATGGCGTGCACTTCGGGGA
GCTGCATCGAAGGCTGTTGATTCACAGGAGCTACTTGACTATTCTCTTCGAGGACTGGGT
GGAAAACTGATGGACGATGGCCATTTCATAGCTGTCCGCTGCAATGCTGAGACGAGTGCA
ATTGAATACAGGCTGGAAGATAACTCCAACCAGTCAGTTGATGCGGCTGCGTTTGGGCCT
TCTGTTGATCATCTTCTGCACGATCTGAAGTTCCTCTATAACGCTTTGCTGAACCCAGAA
ACCATGTTGGCTTCACAGCCAGAGGTTATAGGTGCATCATCACACAGTGCAGCAGCAAAG
ATTCTCGACTGCAAGCAGTTCATCAAACATTACGATCAGCACACCCCACGGGCTCCTTTG
AACCCATTCCTACTTTCTGTGAGGTGTTCCATTGAACTTCTTGATCACCCAAAAGACTAC
ACTGCACCACCGGTGGAACTAGTGCTTTTACCAGCAAGTGCTACCCTTGCTGAACTGAAA
ATACAGGCTACAAGGGCCTTTCAAGAAACATACCTCATGTTCCAAAGCTACCAGGTTGAA
CAGCTCCCTGACTTCCCAAATTTTAGTGACACAACCCTCGTGAAGCATGTGCTTGGCTCA
AGCCAGCTCGTGAGGGTAAGAGGAAGGTGCACTGGGGATAACCGAAGAATTGTGCAATTC
AGGATGGAAAGGGGGTTGGAGAACTGGACGGTCGACTGCACCTGTGGAGCCAAGGACGAT
GATGGCGAGAGGATGCTTGCATGTGATGTTTGTGGAGTTTGGCAACACACCAGGTGTTCA
GGGATTAGTGATTTTGATGATGTCCCTGAGAAGTTCATCTGCAGGAAGTGTGCTAGTCCA
CGCAGAGGAAAGGGTCGTGGTGGTGGAGGTGGCAATGGTGGTAGCAGAATGGATGTGAGC
GCTGCAGGGAGGTGCAAGGATGAGATAGGATCATCTGTTGGCGGTGCAGGCAAATTTGGG
CGCATGGCAACTGTTGGATGA

Peptide Sequence

PEP ID

Os01t0877500-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:38083446:38084945:1 gene:Os01g0877500 transcript:Os01t0877500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0877500-01);Hypothetical conserved gene. (Os01t0877500-02)
Sequence

FSHRQPIRTPLQNTIALYWALSDRQLVTVRDLFRFIMHLLHQARKKNETSKPTTDEHKEV
ASNVLCKWTKEDIDRAETAMLKVLRVVQPGQWVSWRALRGAASKAVDSQELLDYSLRGLG
GKLMDDGHFIAVRCNAETSAIEYRLEDNSNQSVDAAAFGPSVDHLLHDLKFLYNALLNPE
TMLASQPEVIGASSHSAAAKILDCKQFIKHYDQHTPRAPLNPFLLSVRCSIELLDHPKDY
TAPPVELVLLPASATLAELKIQATRAFQETYLMFQSYQVEQLPDFPNFSDTTLVKHVLGS
SQLVRVRGRCTGDNRRIVQFRMERGLENWTVDCTCGAKDDDGERMLACDVCGVWQHTRCS
GISDFDDVPEKFICRKCASPRRGKGRGGGGGNGGSRMDVSAAGRCKDEIGSSVGGAGKFG
RMATVG

Transcript Sequence

Transcript ID

Os01t0877500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:38083446:38084945:1 gene:Os01g0877500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0877500-01);Hypothetical conserved gene. (Os01t0877500-02)
Sequence

ACTTCTCACATCGCCAGCCCATTCGGACCCCTCTGCAGAACACGATTGCTCTGTACTGGG
CACTCTCTGATCGCCAGCTTGTGACTGTTCGGGACCTCTTCCGGTTCATAATGCACCTGC
TTCATCAAGCACGCAAGAAGAACGAGACATCAAAACCCACAACTGATGAACACAAAGAAG
TTGCATCTAATGTGCTCTGCAAGTGGACAAAGGAAGATATTGATCGGGCAGAAACTGCAA
TGCTCAAGGTCCTACGGGTTGTTCAGCCTGGACAGTGGGTATCATGGCGTGCACTTCGGG
GAGCTGCATCGAAGGCTGTTGATTCACAGGAGCTACTTGACTATTCTCTTCGAGGACTGG
GTGGAAAACTGATGGACGATGGCCATTTCATAGCTGTCCGCTGCAATGCTGAGACGAGTG
CAATTGAATACAGGCTGGAAGATAACTCCAACCAGTCAGTTGATGCGGCTGCGTTTGGGC
CTTCTGTTGATCATCTTCTGCACGATCTGAAGTTCCTCTATAACGCTTTGCTGAACCCAG
AAACCATGTTGGCTTCACAGCCAGAGGTTATAGGTGCATCATCACACAGTGCAGCAGCAA
AGATTCTCGACTGCAAGCAGTTCATCAAACATTACGATCAGCACACCCCACGGGCTCCTT
TGAACCCATTCCTACTTTCTGTGAGGTGTTCCATTGAACTTCTTGATCACCCAAAAGACT
ACACTGCACCACCGGTGGAACTAGTGCTTTTACCAGCAAGTGCTACCCTTGCTGAACTGA
AAATACAGGCTACAAGGGCCTTTCAAGAAACATACCTCATGTTCCAAAGCTACCAGGTTG
AACAGCTCCCTGACTTCCCAAATTTTAGTGACACAACCCTCGTGAAGCATGTGCTTGGCT
CAAGCCAGCTCGTGAGGGTAAGAGGAAGGTGCACTGGGGATAACCGAAGAATTGTGCAAT
TCAGGATGGAAAGGGGGTTGGAGAACTGGACGGTCGACTGCACCTGTGGAGCCAAGGACG
ATGATGGCGAGAGGATGCTTGCATGTGATGTTTGTGGAGTTTGGCAACACACCAGGTGTT
CAGGGATTAGTGATTTTGATGATGTCCCTGAGAAGTTCATCTGCAGGAAGTGTGCTAGTC
CACGCAGAGGAAAGGGTCGTGGTGGTGGAGGTGGCAATGGTGGTAGCAGAATGGATGTGA
GCGCTGCAGGGAGGTGCAAGGATGAGATAGGATCATCTGTTGGCGGTGCAGGCAAATTTG
GGCGCATGGCAACTGTTGGATGACTGTACATAATGTGTGAAATGTAAATACTGAGGGGAG
AGTGGGGAGTAGCACCTGAGGCCTGTGTGAACCTTCATGGAATCTTGTCTTTCTGACCAG
TGATATGATGTTAATCTATCCTCCTTGGAAGC