Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0875400-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:37986867:37991746:-1 gene:Os01g0875400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin domain containing protein. (Os01t0875400-01)
Sequence

ATGGCGGAGGCGTCCTCGTCCTCGGCGGCGGCGGTCCCGCCGCTGGACCCGGAGGCGATT
GCCGCCGTGGCGGAGGCAGCGCCACCGGAGGAGATGACGCTGGTGGCGAAGTGGAAAGGG
AACGACTACACGGTGCGGGTGGTCGGGGACGACACGCTGGGGGAGCTGAAGCGGCGCATC
TGCGAGGTCACGGGGGTTCTCCCTAAACGGCAGAAGCTGCTCTACCCCAAGTTCAAGCTC
AACGAGTGCAAGGACTCCGAGCTCATCTCCTCCATCCCCTTCAAGCCCAACGTCAAGATC
AACATGATCGGCACTGTTGAAGATGAAATATTTGTGGACCAAGAAGATGATCCAGAGATA
CTCAATGATTATGAAATAGGCCAGAATGAAGTTACTGCTATCAAGGATAAAGATGTCTAC
AAGCAAAAACTAAAACGGCGTGCAAGTCAATATAAGATCAAGATATTGAATCCATGCCGC
AAAGGGAAAAAACTGCTTGTCTTAGACATTGATTATACTCTATTCGACCATAGGTCCGCT
GCTGAGAACCCTATCGAATTGATGCGTCCATATCTACACGAGTTCCTCTCTGCTGCATAT
TCAGAATATGATATCATGATATGGTCAGCAACTAGCATGAAATGGGTGGGGATGAAGATG
GACCAACTTGGAGTTCTTGGCAACCCCAACTACAAAATTACTGCTCTTATGGATCACTTG
GCGATGATAACTGTGCAATCTGAAAACCTGTCAGAAAAGAAAACTTTTGATTGCAAGCCT
CTTGGTGTCATTTGGGCTCAGTTCCCCGAGTACAATGAAACAAACACAATCATGTTTGAT
GACCTCAGAAGGAACTTTGTCATGAATCCACAGAATGGTCTTGTGATCAAACCATACAAG
AGGACCCATTCAAACAGAGGCACTGATCAAGAGCTGGTGAAGCTTACACAATACCTGCTT
ACCATTGCAGAGCTAGAAGATTTGAGCAAGCTTGACCATAGTGCATGGGAATCCTTCACA
GAAGAAAATGCCAAGAGACGCAGACACAGGTAG

Peptide Sequence

PEP ID

Os01t0875400-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:37986867:37991746:-1 gene:Os01g0875400 transcript:Os01t0875400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin domain containing protein. (Os01t0875400-01)
Sequence

MAEASSSSAAAVPPLDPEAIAAVAEAAPPEEMTLVAKWKGNDYTVRVVGDDTLGELKRRI
CEVTGVLPKRQKLLYPKFKLNECKDSELISSIPFKPNVKINMIGTVEDEIFVDQEDDPEI
LNDYEIGQNEVTAIKDKDVYKQKLKRRASQYKIKILNPCRKGKKLLVLDIDYTLFDHRSA
AENPIELMRPYLHEFLSAAYSEYDIMIWSATSMKWVGMKMDQLGVLGNPNYKITALMDHL
AMITVQSENLSEKKTFDCKPLGVIWAQFPEYNETNTIMFDDLRRNFVMNPQNGLVIKPYK
RTHSNRGTDQELVKLTQYLLTIAELEDLSKLDHSAWESFTEENAKRRRHR

Transcript Sequence

Transcript ID

Os01t0875400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:37986867:37991746:-1 gene:Os01g0875400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin domain containing protein. (Os01t0875400-01)
Sequence

CTTGTTTCTTCAGACCCCAAGCCGATGGCGGAGGCGTCCTCGTCCTCGGCGGCGGCGGTC
CCGCCGCTGGACCCGGAGGCGATTGCCGCCGTGGCGGAGGCAGCGCCACCGGAGGAGATG
ACGCTGGTGGCGAAGTGGAAAGGGAACGACTACACGGTGCGGGTGGTCGGGGACGACACG
CTGGGGGAGCTGAAGCGGCGCATCTGCGAGGTCACGGGGGTTCTCCCTAAACGGCAGAAG
CTGCTCTACCCCAAGTTCAAGCTCAACGAGTGCAAGGACTCCGAGCTCATCTCCTCCATC
CCCTTCAAGCCCAACGTCAAGATCAACATGATCGGCACTGTTGAAGATGAAATATTTGTG
GACCAAGAAGATGATCCAGAGATACTCAATGATTATGAAATAGGCCAGAATGAAGTTACT
GCTATCAAGGATAAAGATGTCTACAAGCAAAAACTAAAACGGCGTGCAAGTCAATATAAG
ATCAAGATATTGAATCCATGCCGCAAAGGGAAAAAACTGCTTGTCTTAGACATTGATTAT
ACTCTATTCGACCATAGGTCCGCTGCTGAGAACCCTATCGAATTGATGCGTCCATATCTA
CACGAGTTCCTCTCTGCTGCATATTCAGAATATGATATCATGATATGGTCAGCAACTAGC
ATGAAATGGGTGGGGATGAAGATGGACCAACTTGGAGTTCTTGGCAACCCCAACTACAAA
ATTACTGCTCTTATGGATCACTTGGCGATGATAACTGTGCAATCTGAAAACCTGTCAGAA
AAGAAAACTTTTGATTGCAAGCCTCTTGGTGTCATTTGGGCTCAGTTCCCCGAGTACAAT
GAAACAAACACAATCATGTTTGATGACCTCAGAAGGAACTTTGTCATGAATCCACAGAAT
GGTCTTGTGATCAAACCATACAAGAGGACCCATTCAAACAGAGGCACTGATCAAGAGCTG
GTGAAGCTTACACAATACCTGCTTACCATTGCAGAGCTAGAAGATTTGAGCAAGCTTGAC
CATAGTGCATGGGAATCCTTCACAGAAGAAAATGCCAAGAGACGCAGACACAGGTAGTTT
TTTCTCAGTGTATTGATCAGCAGGAAAGAAAAGTTCGCCCTCCTTTTTGATCACTGCTAT
TAACTGCATAGACTAGAATATCTTGGATTGACCATGACAACCACAATGCTACTTAGAATA
CTCTACATATATCCCTGCGTTCGATCTGCACAAAAACATTTCCAAACTGCAACAGTTATT
TTTTAACCTTCCTGTGTGCATTTCAACGTTAAACCT