Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0874900-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:37962564:37966769:1 gene:Os01g0874900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine hydroxymethyltransferase 4 description:Similar to Hydroxymethyltransferase. (Os01t0874900-01)
Sequence	ATGGATCTCTCGCGGCCGGAATCGTCGGACCTGTCGCTGGGTTTCCACTCGCTCGGCCAC GCCCGCGGGCACGCGGTCACGGGGCCGCTGCGGCTGTTCGATGACATGGAGGACGCCAAG CCGGAGAAGAGCGTCGGTGGCGGCGGAGGAGGAGGGGGAGGAGGAGGCGAGGAGGAGGAT GGGGAGGAAGGGGGCGACCAGCACTTCTCCCTCCTCGGCCACGCGCTCTGCGTCAAGCGT CCACGCCGCGCGCTCTACGGAGGCGGAGGCGGAGGCGGGGCAGGAGGTGGAGGAGGAGGA GGAGGGGAGGCGTCCTCCTGCTCGTCTTCCTCCTCGTCGCTGCACCCGGCGAAGCGGCAG GCGACGGCGGAGCGCGGCGCGGATCTGGAGGCCCGCCGCGGCGCCGTCCGCGCGTGGGGC AACCAGGCGCTGGCGGAGGCCGACCCGGACGTGCACGCGCTGATGGAGCTCGAGCGCGAC CGCCAGGTGCGCGGGATCGAGCTGATCGCGTCGGAGAACTTCGTCTGCCGCGCGGTGCTC GAGGCGCTCGGCAGCCACCTCACCAACAAGTACTCTGAGGGCCATCCCGGGGCTCGGTAC TATGGCGGGAACCAGCACATCGACGGCATCGAGCGCCTCTGCCATGAGCGCGCCCTCGCC GCCTTCGGTCTCGACCCCGCCTGCTGGGGGGTCAACGTCCAGCCATACTCCTGCACCTCT GCAAACCTAGCTGTTTACACAGGTCTCCTCCTGCCCAAGGACCGTATCATGGGGCTCGAG CCGCCTTCCGGTGGCCATGTCAGCCACGGGTACTACACACCAAGTGGTAAGAAGGTGTCT GGAGCATCCATATTCTTCGAGAGCTTGTCGTACAAGGTGAATCCGCAGACTGGGTATATT GATTACGACAAGCTTGAGGAGCGGGCAATGGATTTCCACCCTAAGATTCTCATATGTGGT GGGAGCTCATACCCCAGGGAGTGGGATTTTGCACGGATGAGGCTCATTGCTGATAAGTGC GGTGCGGTGCTCATGTGCGATATGGCACATATCAGCGGGCTTGTTGCGGCCAAGGAATGC CGTAGTCCCTTTGATTACTGTGATGTGGTTACATCAACTACTCACAAGAATCTGAGAGGT CCTAGAGGTGGTATAATATTTTTCAGGAGAGGGAAAAACTTAAGGAGGCGTACTGGATCT TTTTCTCAAGCGGATGAGAATGATTATGACTTCGAGGACAGGATAAATTTTGCAGTTTTC CCTTCAATGCAAGGAGGACCCCATAATAATCATATTGCAGCCTTGGCGATAACTCTGAAG CAAGTAGCAACACCTGAATACAAAGCATACATCATACAAGTTAAGAAAAATGCCCAAGCT TTGGCATCAGCCTTACTCAGAAGAAAATGCAGATTGGTTACTGGTGGCACCGATAACCAC TTGGTACTTTGGGACCTCAGAAATTTAGGCTTGACTGGAAAGAACTTTGAGAAGGTCTGT GAGGCATGCCACATCTCCATAAATAAGATGCCGATATATGGGGATAATGGCTCAATATCT CCTGGGGGTGTTCGGATTGGAACACCTGCAATGACTACTAGAGGTTGCTTGGAAGATGAC TTTGAGGTGATCGCAGATTTCCTCATCAGAGCCACCCAAATAGCTAGTAATCTTATGAAA GAACATGGAAAAATGCAGAAGGAATTCCTGAGAGGCCTACAGAACAATAAAGATATCATA GAACTCCGTAACCAGGTTGAGAATTTTGCATCGCAGTTTGCAATGCCAGGTTTTGATGTA TGA

Peptide Sequence

PEP ID	Os01t0874900-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:37962564:37966769:1 gene:Os01g0874900 transcript:Os01t0874900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine hydroxymethyltransferase 4 description:Similar to Hydroxymethyltransferase. (Os01t0874900-01)
Sequence	MDLSRPESSDLSLGFHSLGHARGHAVTGPLRLFDDMEDAKPEKSVGGGGGGGGGGGEEED GEEGGDQHFSLLGHALCVKRPRRALYGGGGGGGAGGGGGGGGEASSCSSSSSSLHPAKRQ ATAERGADLEARRGAVRAWGNQALAEADPDVHALMELERDRQVRGIELIASENFVCRAVL EALGSHLTNKYSEGHPGARYYGGNQHIDGIERLCHERALAAFGLDPACWGVNVQPYSCTS ANLAVYTGLLLPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNPQTGYI DYDKLEERAMDFHPKILICGGSSYPREWDFARMRLIADKCGAVLMCDMAHISGLVAAKEC RSPFDYCDVVTSTTHKNLRGPRGGIIFFRRGKNLRRRTGSFSQADENDYDFEDRINFAVF PSMQGGPHNNHIAALAITLKQVATPEYKAYIIQVKKNAQALASALLRRKCRLVTGGTDNH LVLWDLRNLGLTGKNFEKVCEACHISINKMPIYGDNGSISPGGVRIGTPAMTTRGCLEDD FEVIADFLIRATQIASNLMKEHGKMQKEFLRGLQNNKDIIELRNQVENFASQFAMPGFDV

Transcript Sequence

Transcript ID	Os01t0874900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:37962564:37966769:1 gene:Os01g0874900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:serine hydroxymethyltransferase 4 description:Similar to Hydroxymethyltransferase. (Os01t0874900-01)
Sequence	ACATCCCCCCCCCCCCTTCCCCTCCTCACCTTCCCTTCTCCGGTTCTCAGATTCCACCCA ATCCGCCGCTGCGTCGCGTGTGCTGTTCGGCGAAATTCCAAGCCCCAATTCCCCACATCT CATGGTTCTCTCTCCCATCGCCTCCGCCGACGTCGACCGCCTCCTTTGCTGCTGTCGCCG GTGTTGTTGCTGTCGCCGGTGTTGTTGTTGTTGAGGGGGTAACGGTGGTGGTGGTGGTGG TGGTGAGGGGTTAGAGGGGCTAGGGTTGCGGATTTGCGGCCAATTGGTTGGGGGATTTCG AAGGGGGAATGGATCTCTCGCGGCCGGAATCGTCGGACCTGTCGCTGGGTTTCCACTCGC TCGGCCACGCCCGCGGGCACGCGGTCACGGGGCCGCTGCGGCTGTTCGATGACATGGAGG ACGCCAAGCCGGAGAAGAGCGTCGGTGGCGGCGGAGGAGGAGGGGGAGGAGGAGGCGAGG AGGAGGATGGGGAGGAAGGGGGCGACCAGCACTTCTCCCTCCTCGGCCACGCGCTCTGCG TCAAGCGTCCACGCCGCGCGCTCTACGGAGGCGGAGGCGGAGGCGGGGCAGGAGGTGGAG GAGGAGGAGGAGGGGAGGCGTCCTCCTGCTCGTCTTCCTCCTCGTCGCTGCACCCGGCGA AGCGGCAGGCGACGGCGGAGCGCGGCGCGGATCTGGAGGCCCGCCGCGGCGCCGTCCGCG CGTGGGGCAACCAGGCGCTGGCGGAGGCCGACCCGGACGTGCACGCGCTGATGGAGCTCG AGCGCGACCGCCAGGTGCGCGGGATCGAGCTGATCGCGTCGGAGAACTTCGTCTGCCGCG CGGTGCTCGAGGCGCTCGGCAGCCACCTCACCAACAAGTACTCTGAGGGCCATCCCGGGG CTCGGTACTATGGCGGGAACCAGCACATCGACGGCATCGAGCGCCTCTGCCATGAGCGCG CCCTCGCCGCCTTCGGTCTCGACCCCGCCTGCTGGGGGGTCAACGTCCAGCCATACTCCT GCACCTCTGCAAACCTAGCTGTTTACACAGGTCTCCTCCTGCCCAAGGACCGTATCATGG GGCTCGAGCCGCCTTCCGGTGGCCATGTCAGCCACGGGTACTACACACCAAGTGGTAAGA AGGTGTCTGGAGCATCCATATTCTTCGAGAGCTTGTCGTACAAGGTGAATCCGCAGACTG GGTATATTGATTACGACAAGCTTGAGGAGCGGGCAATGGATTTCCACCCTAAGATTCTCA TATGTGGTGGGAGCTCATACCCCAGGGAGTGGGATTTTGCACGGATGAGGCTCATTGCTG ATAAGTGCGGTGCGGTGCTCATGTGCGATATGGCACATATCAGCGGGCTTGTTGCGGCCA AGGAATGCCGTAGTCCCTTTGATTACTGTGATGTGGTTACATCAACTACTCACAAGAATC TGAGAGGTCCTAGAGGTGGTATAATATTTTTCAGGAGAGGGAAAAACTTAAGGAGGCGTA CTGGATCTTTTTCTCAAGCGGATGAGAATGATTATGACTTCGAGGACAGGATAAATTTTG CAGTTTTCCCTTCAATGCAAGGAGGACCCCATAATAATCATATTGCAGCCTTGGCGATAA CTCTGAAGCAAGTAGCAACACCTGAATACAAAGCATACATCATACAAGTTAAGAAAAATG CCCAAGCTTTGGCATCAGCCTTACTCAGAAGAAAATGCAGATTGGTTACTGGTGGCACCG ATAACCACTTGGTACTTTGGGACCTCAGAAATTTAGGCTTGACTGGAAAGAACTTTGAGA AGGTCTGTGAGGCATGCCACATCTCCATAAATAAGATGCCGATATATGGGGATAATGGCT CAATATCTCCTGGGGGTGTTCGGATTGGAACACCTGCAATGACTACTAGAGGTTGCTTGG AAGATGACTTTGAGGTGATCGCAGATTTCCTCATCAGAGCCACCCAAATAGCTAGTAATC TTATGAAAGAACATGGAAAAATGCAGAAGGAATTCCTGAGAGGCCTACAGAACAATAAAG ATATCATAGAACTCCGTAACCAGGTTGAGAATTTTGCATCGCAGTTTGCAATGCCAGGTT TTGATGTATGAGTGTGCATGTATGTGTACATATCTTGGTGAGGTTGTCCAGATTCATCAG GAATTAGCAACCGTTTCACTCTTTGCCGAAGTGTTTCTTTCAACAGGAGCAGAATAGGGA AAGATCGTTTTTTCTTTTGTTGGAAATTGGTCTTGACTGAAGCTGTACATGCATACTTCT GAGTTGTCATTTATGTAACGTATTGAACCTTCATATAACGGCTTTGTATAGGAGATAATT TTCCTCC