Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0873800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:37890722:37897447:-1 gene:Os01g0873800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0873800-01)
Sequence

ATGGACGCGTCGAGCGAGCTGCAGTGCGTGGGGAGGCTGGAGGTCGCCGCGCCGCCGCCG
GCGCGCTACCTCCGGGTGGGCTCCCTCCCCGTCCCCACCGACTCCCCCGCCTCGCTCCCC
GCCCTCCTCCCATCCTCGTCCCCAACTGGAGCTCCAAGGTATCAAATGTTGCCATTGGAG
ACTGATCTCAACACACTCCCGATGATACCAAATATTCCAGAAAAGGTTTTCCCGATGGAC
GCAAAGAGTACTGAAGGATCACGATATGGAAGTGGACTTGCCAACCAAAACTTATCAAGG
AAGTGTGAAGCACTGGCTGTGTCAGGCCTAGCTGAATATGGTGATGAAATAGATGTGGTT
GCTCCAACTGATATCCTAAAGCAGATTTTCAAAATACCATACTCCAAGGCACAAGTATCT
ATTGCTGTTAACCGTATTGGAGATACACTTATTCTAAACACAGGTCCTGATGTTGATGAA
GGTGAAAAGATATTCAGGAGACAAAGCAACCACCCCAAAGGATCTGATCCTTCAATGTTT
CTTAATTTTGCAATGCATTCAGTGAGAGCAGAAGCTTGTGATTGCCCACCAAGTCATCAA
CCATCAAAGGAGAAGCAAACGGCATCCGCTATCTTGCGTGGACCATTTGGCCAAAGGGAG
GGTCCATTGGATTCGCCATCGTCATCTAGTTTTAGCACTTCACCTTATCTGGACCAGAAT
ATCAGTAAAAGTAGAAAAACATCACATGGTGCTCGTGAAAGCCTGTACTGGGGTGCAAGG
GAAAATAAGCAGAAAGTTAAAGGGTCTGACCCTGTTAAGAAAACCACTCATGTTGGTGAC
AAACCCAGATGCGACGTGCAAGAATCCGAGAAAAGTAGGAGGGTGGGAAACAATGGATTT
CGGAAGGTTTGCTTTTGGCAGTTTCATAATTTCCATATGCTTTTGGGTAGCGACTTGCTT
ATATTTAGCAATGAGAAATATATGGCGGTCAGCTTACACCTCTGGGATGTTTCGAGACAG
GTTACTCCACTGAACTGGCTTGAAGCTTGGCTAGATAATATAATGGCAAGTGTGCCAGAA
TTGGCTATATGTTATCATCAAAATGGTGTTGTGCAAGGTTATGAGCTCTTGAAAAATGAT
GATATTTTTCTACTTAAGGGTGTATCTGATGATGGTACACCTGCATTTCATCCACAAGTT
GTCCAGCAAAATGGCCTTGCTGTCCTGAGGTTCCTGCAAGATAACTGTAAGCAAGACCCT
GGTGCATATTGGTTGTACAAGGGTGCTGAAGAGGATGTTATACAGCTGTATGATCTGTCT
ATCTTACCTCAAAATCATACTGCTGGTGATCATAGATCTACTTGTGGTCCTATGTCTTCT
TTAATGAAGAAGGGTAGAAAGGAGTCGTTGTTCTCTTTGGGCACACTCTTGTACCGTGTT
GCTCACAGGATGTCTTTATCAAAGGTGCCTAGTAATAGAGCAAAATGTGCGAAGTTCTTC
AAAAAATGTTTGGACTTTCTCAGCGAACAGGATCACTTGGTTGTCCGGGCGTATGCTCAT
GAACAGTTTGCAAGGCTCATCCTTAGGTGTTACGAGGAGTTGGAATTGACATCTGAATCA
TTTTTGCTTGAATCTGAAGTTACTCTTACTGACTTGGATGAGTCTCCAGACCTGAGCCTT
GAGAATTTACCATCGAAGCAAAATGAAGTGCTGACAGAGATTAGCGAGGAACCAGCAACC
TTAGATGGAATGTTGGAATGTTCACGGTCAGGATCTTCTCAAGCGTCAAATAGTTTAGTG
GATCCGGGTCATGTTGACATTAGTCCTGTATCTTCAGCTACAAAAGGAGATGTTACTGTG
GATAGCTTGGTAATGTGTCAGTCTGGAACTCAGGTATCAAGGACAATTGCTGATGCAATA
TCCTCCAAGTTGGCAGCTATACACCATGTATCACAAGCTATCAAATCCCTTCGATGGAAC
CGACAGCTCCAGAATACACAAGATGATTGCGTTGGCAATGCAGATACCATTTGGGAGAAA
CCTGTTGACTTCTCTTTATGCCGATGTGGTGACATTGACTGTATTGAAGTTTGCGACATT
AGAGAGTGGCTACCAAAATCGAAAATGGATCACAAATTATGGAAACTTGTTCTTTTGCTA
GGTGAATCTTATCTGGCACTAGGAGAGGCATACAAGAATGACGGGCAGCTTCGTCGCACT
CTTAAAGTTGTGGAATTGGCTTGTCTAGTTTATGGGTCTATGCCTAAAAATCTCGAGGGT
GAGCAATTCATCTCATCCATGTCCAATAGTTCGTTGAGTGTTGAAGATGGTGATCTAAAG
GCAAATCTTGTTTTGGATGAAGCAGACTATTTCAAAAATGCTAAATGTTTCAATTATGAT
GTTTCTGCTGGGCAGTTGCCTCCAAACTATTTATTTTGGGTTAAGGCGTGGATGCTTGTA
GGGGATGTCTATGCAGAATATCACAGATTGAGAGGTCAACAAGCACCAGTGTTGCCTGAA
CAAAAGCCTGATGGTGAAGTTAGAATGTCAAATGAAGTTGCAATGGAGGTCAAACGTCTT
AAGAGAAAACTGGGAAAGGATAAGCAGAATTGTGGCACATGTTCACTGATAAATTGTAGC
TGCCAAAGTGATAGGGCAAATAGTGGCAGCAGTGCAAGCAGCAGTAGTTCTGAGGCCTCT
ACACTATATGGAAGAAAGAAAAACAAAAAATCATCTGGCAGGAACTTCCATTCACAGTCT
AGAGAAACTAAAGAGAATCCCAGCACCCAGGACTCTATGGGAGATTCTGAAAAAAGGTCT
GTATCGAATGTTGAAATTGATACTAATAATTACACCATGGAAAATCAATCAAGAAATAAT
GATGGGGATCCTGATAAATCTAAAGAAGATGTTTCCAGTGTGAGGGTTGGTGGTATCTTT
AAGTTCCTTGGAGGACCTGAACCAGGAGATGTTGAATACAATTTGCATTCTGCTATTCAT
TGCTACGATGCAGCCAAGGGAGTCATTTTTGCATTTCCAGTGCCCTTGGCTGAAAAATCC
ACCATTCTTAAGAAAAGAGGCTGGGCATTCAATGAACTGGGCTGCCATAGGCTTGAAAGT
AGAAATCTGGGTAATGCTGAAATTGCTTTTGCTGATGCTATTAAAGCATTTCAAGAGGTT
GCTGACCACACTAATGTTATATTAATCAACTGTAACTTAGGTCATGGTAGAAGAGCTTTA
GCAGAGCAATTTGTGTCAAGGATAGATGAATTTCAGAAGTATGATTTTCCTCAAGATGCA
TATATGCAATCCTTTAAGTCTGCTAAGTCGGAATATTTTCAAGCTATAAACTATTACACA
GCAGCTAAGAGGCAACTAACATATGCTGACAATGAGGTTGATAAAGTACTTTACAATGAG
GTTTACACTCAGTATGCCCATACACACCTGAGGCTTGGAATGCTTTTGGCAAGGGAAAGC
TTCTTAACTGACAGTTATGAAGGTGGATTTGTTGATGAATCATCTAATAGAACAGTTCTT
GAGATTTCAGCAAGTGATGCTTTCAGAGAGGCTTTGTCTACATATGAATCTCTTGGTGAA
CATCGCAAGCAGGAAGCCGCTTTTGGCCACTTTCAGCTTGCTTGTTATCAGAGGGATCTA
TGCTTAAGGTTCCTCGATTTAATTGACAAGGAGGTCAAACAGAAGAATGAGGATAAATAT
CGTCAGAAAGCTAAGTGGTATGGTTCTTTAGCAGAAAAGAACTGGCAGAGAGCTTTAGAA
TTTTATGGTCCAAAGACACATTCTACCATGTTCTTAAACATCCTTATGGCACAATCTGCC
CTTTCCGTTAACCTCTCTGATTCGTTCCACTCAAGTGTGATGCTTGAAAATGCATTGGTG
CACTTGCTGGACGGTCGCCATGTGGTTGAAGCAAATGATGAGTATTCAAACGACTTGGAT
CTGGACATAAAACCGAAATTCTGGAGCCAGCTGCAGCGCCTGCTGAAGAGCATGTTGGCA
GCTGCTCGACCGGCAGCTTCTGTCGGCCAGGCCAACGCCAGCAACAGCAGAGGAGACACC
GCCAAACTAAAAGAGATGTATCGTCTGTCGCTCAAATCAACCTCTCTGGGCCAGCTGCAC
GCGTTGCACAAGATTTGGGTCTCCTAA

Peptide Sequence

PEP ID

Os01t0873800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:37890722:37897447:-1 gene:Os01g0873800 transcript:Os01t0873800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0873800-01)
Sequence

MDASSELQCVGRLEVAAPPPARYLRVGSLPVPTDSPASLPALLPSSSPTGAPRYQMLPLE
TDLNTLPMIPNIPEKVFPMDAKSTEGSRYGSGLANQNLSRKCEALAVSGLAEYGDEIDVV
APTDILKQIFKIPYSKAQVSIAVNRIGDTLILNTGPDVDEGEKIFRRQSNHPKGSDPSMF
LNFAMHSVRAEACDCPPSHQPSKEKQTASAILRGPFGQREGPLDSPSSSSFSTSPYLDQN
ISKSRKTSHGARESLYWGARENKQKVKGSDPVKKTTHVGDKPRCDVQESEKSRRVGNNGF
RKVCFWQFHNFHMLLGSDLLIFSNEKYMAVSLHLWDVSRQVTPLNWLEAWLDNIMASVPE
LAICYHQNGVVQGYELLKNDDIFLLKGVSDDGTPAFHPQVVQQNGLAVLRFLQDNCKQDP
GAYWLYKGAEEDVIQLYDLSILPQNHTAGDHRSTCGPMSSLMKKGRKESLFSLGTLLYRV
AHRMSLSKVPSNRAKCAKFFKKCLDFLSEQDHLVVRAYAHEQFARLILRCYEELELTSES
FLLESEVTLTDLDESPDLSLENLPSKQNEVLTEISEEPATLDGMLECSRSGSSQASNSLV
DPGHVDISPVSSATKGDVTVDSLVMCQSGTQVSRTIADAISSKLAAIHHVSQAIKSLRWN
RQLQNTQDDCVGNADTIWEKPVDFSLCRCGDIDCIEVCDIREWLPKSKMDHKLWKLVLLL
GESYLALGEAYKNDGQLRRTLKVVELACLVYGSMPKNLEGEQFISSMSNSSLSVEDGDLK
ANLVLDEADYFKNAKCFNYDVSAGQLPPNYLFWVKAWMLVGDVYAEYHRLRGQQAPVLPE
QKPDGEVRMSNEVAMEVKRLKRKLGKDKQNCGTCSLINCSCQSDRANSGSSASSSSSEAS
TLYGRKKNKKSSGRNFHSQSRETKENPSTQDSMGDSEKRSVSNVEIDTNNYTMENQSRNN
DGDPDKSKEDVSSVRVGGIFKFLGGPEPGDVEYNLHSAIHCYDAAKGVIFAFPVPLAEKS
TILKKRGWAFNELGCHRLESRNLGNAEIAFADAIKAFQEVADHTNVILINCNLGHGRRAL
AEQFVSRIDEFQKYDFPQDAYMQSFKSAKSEYFQAINYYTAAKRQLTYADNEVDKVLYNE
VYTQYAHTHLRLGMLLARESFLTDSYEGGFVDESSNRTVLEISASDAFREALSTYESLGE
HRKQEAAFGHFQLACYQRDLCLRFLDLIDKEVKQKNEDKYRQKAKWYGSLAEKNWQRALE
FYGPKTHSTMFLNILMAQSALSVNLSDSFHSSVMLENALVHLLDGRHVVEANDEYSNDLD
LDIKPKFWSQLQRLLKSMLAAARPAASVGQANASNSRGDTAKLKEMYRLSLKSTSLGQLH
ALHKIWVS

Transcript Sequence

Transcript ID

Os01t0873800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:37890722:37897447:-1 gene:Os01g0873800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0873800-01)
Sequence

ATTAGCCAAAGCATCCAAACGCCCGAGAAAAAACCGCGGCGATCGGCGGCGGCGGCGGCG
GCGGCGAGGGGTACGGCTACGGCGGCGATGGACGCGTCGAGCGAGCTGCAGTGCGTGGGG
AGGCTGGAGGTCGCCGCGCCGCCGCCGGCGCGCTACCTCCGGGTGGGCTCCCTCCCCGTC
CCCACCGACTCCCCCGCCTCGCTCCCCGCCCTCCTCCCATCCTCGTCCCCAACTGGAGCT
CCAAGGTATCAAATGTTGCCATTGGAGACTGATCTCAACACACTCCCGATGATACCAAAT
ATTCCAGAAAAGGTTTTCCCGATGGACGCAAAGAGTACTGAAGGATCACGATATGGAAGT
GGACTTGCCAACCAAAACTTATCAAGGAAGTGTGAAGCACTGGCTGTGTCAGGCCTAGCT
GAATATGGTGATGAAATAGATGTGGTTGCTCCAACTGATATCCTAAAGCAGATTTTCAAA
ATACCATACTCCAAGGCACAAGTATCTATTGCTGTTAACCGTATTGGAGATACACTTATT
CTAAACACAGGTCCTGATGTTGATGAAGGTGAAAAGATATTCAGGAGACAAAGCAACCAC
CCCAAAGGATCTGATCCTTCAATGTTTCTTAATTTTGCAATGCATTCAGTGAGAGCAGAA
GCTTGTGATTGCCCACCAAGTCATCAACCATCAAAGGAGAAGCAAACGGCATCCGCTATC
TTGCGTGGACCATTTGGCCAAAGGGAGGGTCCATTGGATTCGCCATCGTCATCTAGTTTT
AGCACTTCACCTTATCTGGACCAGAATATCAGTAAAAGTAGAAAAACATCACATGGTGCT
CGTGAAAGCCTGTACTGGGGTGCAAGGGAAAATAAGCAGAAAGTTAAAGGGTCTGACCCT
GTTAAGAAAACCACTCATGTTGGTGACAAACCCAGATGCGACGTGCAAGAATCCGAGAAA
AGTAGGAGGGTGGGAAACAATGGATTTCGGAAGGTTTGCTTTTGGCAGTTTCATAATTTC
CATATGCTTTTGGGTAGCGACTTGCTTATATTTAGCAATGAGAAATATATGGCGGTCAGC
TTACACCTCTGGGATGTTTCGAGACAGGTTACTCCACTGAACTGGCTTGAAGCTTGGCTA
GATAATATAATGGCAAGTGTGCCAGAATTGGCTATATGTTATCATCAAAATGGTGTTGTG
CAAGGTTATGAGCTCTTGAAAAATGATGATATTTTTCTACTTAAGGGTGTATCTGATGAT
GGTACACCTGCATTTCATCCACAAGTTGTCCAGCAAAATGGCCTTGCTGTCCTGAGGTTC
CTGCAAGATAACTGTAAGCAAGACCCTGGTGCATATTGGTTGTACAAGGGTGCTGAAGAG
GATGTTATACAGCTGTATGATCTGTCTATCTTACCTCAAAATCATACTGCTGGTGATCAT
AGATCTACTTGTGGTCCTATGTCTTCTTTAATGAAGAAGGGTAGAAAGGAGTCGTTGTTC
TCTTTGGGCACACTCTTGTACCGTGTTGCTCACAGGATGTCTTTATCAAAGGTGCCTAGT
AATAGAGCAAAATGTGCGAAGTTCTTCAAAAAATGTTTGGACTTTCTCAGCGAACAGGAT
CACTTGGTTGTCCGGGCGTATGCTCATGAACAGTTTGCAAGGCTCATCCTTAGGTGTTAC
GAGGAGTTGGAATTGACATCTGAATCATTTTTGCTTGAATCTGAAGTTACTCTTACTGAC
TTGGATGAGTCTCCAGACCTGAGCCTTGAGAATTTACCATCGAAGCAAAATGAAGTGCTG
ACAGAGATTAGCGAGGAACCAGCAACCTTAGATGGAATGTTGGAATGTTCACGGTCAGGA
TCTTCTCAAGCGTCAAATAGTTTAGTGGATCCGGGTCATGTTGACATTAGTCCTGTATCT
TCAGCTACAAAAGGAGATGTTACTGTGGATAGCTTGGTAATGTGTCAGTCTGGAACTCAG
GTATCAAGGACAATTGCTGATGCAATATCCTCCAAGTTGGCAGCTATACACCATGTATCA
CAAGCTATCAAATCCCTTCGATGGAACCGACAGCTCCAGAATACACAAGATGATTGCGTT
GGCAATGCAGATACCATTTGGGAGAAACCTGTTGACTTCTCTTTATGCCGATGTGGTGAC
ATTGACTGTATTGAAGTTTGCGACATTAGAGAGTGGCTACCAAAATCGAAAATGGATCAC
AAATTATGGAAACTTGTTCTTTTGCTAGGTGAATCTTATCTGGCACTAGGAGAGGCATAC
AAGAATGACGGGCAGCTTCGTCGCACTCTTAAAGTTGTGGAATTGGCTTGTCTAGTTTAT
GGGTCTATGCCTAAAAATCTCGAGGGTGAGCAATTCATCTCATCCATGTCCAATAGTTCG
TTGAGTGTTGAAGATGGTGATCTAAAGGCAAATCTTGTTTTGGATGAAGCAGACTATTTC
AAAAATGCTAAATGTTTCAATTATGATGTTTCTGCTGGGCAGTTGCCTCCAAACTATTTA
TTTTGGGTTAAGGCGTGGATGCTTGTAGGGGATGTCTATGCAGAATATCACAGATTGAGA
GGTCAACAAGCACCAGTGTTGCCTGAACAAAAGCCTGATGGTGAAGTTAGAATGTCAAAT
GAAGTTGCAATGGAGGTCAAACGTCTTAAGAGAAAACTGGGAAAGGATAAGCAGAATTGT
GGCACATGTTCACTGATAAATTGTAGCTGCCAAAGTGATAGGGCAAATAGTGGCAGCAGT
GCAAGCAGCAGTAGTTCTGAGGCCTCTACACTATATGGAAGAAAGAAAAACAAAAAATCA
TCTGGCAGGAACTTCCATTCACAGTCTAGAGAAACTAAAGAGAATCCCAGCACCCAGGAC
TCTATGGGAGATTCTGAAAAAAGGTCTGTATCGAATGTTGAAATTGATACTAATAATTAC
ACCATGGAAAATCAATCAAGAAATAATGATGGGGATCCTGATAAATCTAAAGAAGATGTT
TCCAGTGTGAGGGTTGGTGGTATCTTTAAGTTCCTTGGAGGACCTGAACCAGGAGATGTT
GAATACAATTTGCATTCTGCTATTCATTGCTACGATGCAGCCAAGGGAGTCATTTTTGCA
TTTCCAGTGCCCTTGGCTGAAAAATCCACCATTCTTAAGAAAAGAGGCTGGGCATTCAAT
GAACTGGGCTGCCATAGGCTTGAAAGTAGAAATCTGGGTAATGCTGAAATTGCTTTTGCT
GATGCTATTAAAGCATTTCAAGAGGTTGCTGACCACACTAATGTTATATTAATCAACTGT
AACTTAGGTCATGGTAGAAGAGCTTTAGCAGAGCAATTTGTGTCAAGGATAGATGAATTT
CAGAAGTATGATTTTCCTCAAGATGCATATATGCAATCCTTTAAGTCTGCTAAGTCGGAA
TATTTTCAAGCTATAAACTATTACACAGCAGCTAAGAGGCAACTAACATATGCTGACAAT
GAGGTTGATAAAGTACTTTACAATGAGGTTTACACTCAGTATGCCCATACACACCTGAGG
CTTGGAATGCTTTTGGCAAGGGAAAGCTTCTTAACTGACAGTTATGAAGGTGGATTTGTT
GATGAATCATCTAATAGAACAGTTCTTGAGATTTCAGCAAGTGATGCTTTCAGAGAGGCT
TTGTCTACATATGAATCTCTTGGTGAACATCGCAAGCAGGAAGCCGCTTTTGGCCACTTT
CAGCTTGCTTGTTATCAGAGGGATCTATGCTTAAGGTTCCTCGATTTAATTGACAAGGAG
GTCAAACAGAAGAATGAGGATAAATATCGTCAGAAAGCTAAGTGGTATGGTTCTTTAGCA
GAAAAGAACTGGCAGAGAGCTTTAGAATTTTATGGTCCAAAGACACATTCTACCATGTTC
TTAAACATCCTTATGGCACAATCTGCCCTTTCCGTTAACCTCTCTGATTCGTTCCACTCA
AGTGTGATGCTTGAAAATGCATTGGTGCACTTGCTGGACGGTCGCCATGTGGTTGAAGCA
AATGATGAGTATTCAAACGACTTGGATCTGGACATAAAACCGAAATTCTGGAGCCAGCTG
CAGCGCCTGCTGAAGAGCATGTTGGCAGCTGCTCGACCGGCAGCTTCTGTCGGCCAGGCC
AACGCCAGCAACAGCAGAGGAGACACCGCCAAACTAAAAGAGATGTATCGTCTGTCGCTC
AAATCAACCTCTCTGGGCCAGCTGCACGCGTTGCACAAGATTTGGGTCTCCTAACACATC
TCTGTTGTACAAACATAGACATCAGATTGCTCTACAAACGAGTGTTGTACATGTTGATTA
CATCGTCATCAGCATCTTTGAGCTTGTAACTTATGCTGTCTTTTATGTTTTTATCCATTT
GTTATTTATTTTTTAAAATCTCTGGGATGACTTACATGCTGATTGTAAATTTGCAATTGT
AGTAATAGTTGTGGAATGTGTTGTAACTTAC