Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0872900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:37860133:37861943:-1 gene:Os01g0872900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF635 family protein. (Os01t0872900-01)
Sequence

ATGTTTCGTACAAGATTCCGTATGAATAGACGCCTCTTCCTACGCATTGTGAATGCCCTT
GGTCAGTGTTCTCCCTATTTCACTTATAGGGTAGATTGTACTGGTCGAATAGGGCTTTCA
CCACTGCAAAAGTGTACAGCAGCCATGCGCATGCTGGCATATGGCACTCCTGCAGATGCC
CTTGATGAGTACTTGAAGATTGGGAAGTGTACTTCATTAGAGTGCTTGGATAGGTTTACA
CGGGGGGTGATTGAGGTGTTCGGTGGGGAGTACTTGCGACGCCCCACATCCTCGGATGTT
GAGCGTCTACTTCAGGTCAACGAGTCTCGTGGTTTTTCTGGAATGTTAGGAAGTATAGAT
TGCATGCACTGGCGTTGGGAGAAGTGTCCTTTAGCATGGAGGGGGCAATTCACCCGTGGT
GATTATGGAGTACCAACAATAGTCCTAGAAGCTGTTGCTTCCCAGGACTTGCATATTTGG
CATGCTTTCTTTGGAGTTGCTGGGTCAAACAATGACCTTAATGTGCTGAACCAGTCCCCA
TTGTTTTTTGATGCATTGAAAGGAGAAGCCCCGCAAGTTCAGTTTTCAGTCAATGGGAAT
GAGTATGGAACAGGTTATTACCTTGCTGATGGTATATATCCAGAATGGGCTGCCTTCATG
AAGACCATACCTCTTCCCCAAACTGAGAAGCATAAGTTGTTTGCCAAGCACCAAGAAGGG
GCAAGGAAAGATGTGGAGCGTGCTTTTGGGGTGTTGCAGTCCCGATTTACCATTGTCCGT
CGGCCTGCACGATTGTGGAGGCGGAAGAGTGTTGGGAGGATCATGCTAGCTTGTGTGATT
CTCCACAACATGATAGTCGAAGATGAGAGAGAGGAAGCTACCATTCATATTGACTTGAAT
GAGAATCCAGGGGCATCGTTTGCGCTGCCTCCTGAAGTGAATATAGGTGGTAATCTGTGT
TTTGCTGATGTGATGCGCAAAAAAGCTACTGTCCGTTCTCGTCCACAACACACCCAACTT
AAAAATGATTTGGTCGAGCACATTTGGCATAAGTTTGGAGATAACCATCATAATTAG

Peptide Sequence

PEP ID

Os01t0872900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:37860133:37861943:-1 gene:Os01g0872900 transcript:Os01t0872900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF635 family protein. (Os01t0872900-01)
Sequence

MFRTRFRMNRRLFLRIVNALGQCSPYFTYRVDCTGRIGLSPLQKCTAAMRMLAYGTPADA
LDEYLKIGKCTSLECLDRFTRGVIEVFGGEYLRRPTSSDVERLLQVNESRGFSGMLGSID
CMHWRWEKCPLAWRGQFTRGDYGVPTIVLEAVASQDLHIWHAFFGVAGSNNDLNVLNQSP
LFFDALKGEAPQVQFSVNGNEYGTGYYLADGIYPEWAAFMKTIPLPQTEKHKLFAKHQEG
ARKDVERAFGVLQSRFTIVRRPARLWRRKSVGRIMLACVILHNMIVEDEREEATIHIDLN
ENPGASFALPPEVNIGGNLCFADVMRKKATVRSRPQHTQLKNDLVEHIWHKFGDNHHN

Transcript Sequence

Transcript ID

Os01t0872900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:37860133:37861943:-1 gene:Os01g0872900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF635 family protein. (Os01t0872900-01)
Sequence

ATCTTGGAGACGGAGTGGTCCAAGGAAGTGCATTTAGAGGGATCATGCTGCTGCTCATCA
GCGTCTTGTGGAGGACTACTTCGCTGCAGAACCACTCTACACTAAGAGTATGTTTCGTAC
AAGATTCCGTATGAATAGACGCCTCTTCCTACGCATTGTGAATGCCCTTGGTCAGTGTTC
TCCCTATTTCACTTATAGGGTAGATTGTACTGGTCGAATAGGGCTTTCACCACTGCAAAA
GTGTACAGCAGCCATGCGCATGCTGGCATATGGCACTCCTGCAGATGCCCTTGATGAGTA
CTTGAAGATTGGGAAGTGTACTTCATTAGAGTGCTTGGATAGGTTTACACGGGGGGTGAT
TGAGGTGTTCGGTGGGGAGTACTTGCGACGCCCCACATCCTCGGATGTTGAGCGTCTACT
TCAGGTCAACGAGTCTCGTGGTTTTTCTGGAATGTTAGGAAGTATAGATTGCATGCACTG
GCGTTGGGAGAAGTGTCCTTTAGCATGGAGGGGGCAATTCACCCGTGGTGATTATGGAGT
ACCAACAATAGTCCTAGAAGCTGTTGCTTCCCAGGACTTGCATATTTGGCATGCTTTCTT
TGGAGTTGCTGGGTCAAACAATGACCTTAATGTGCTGAACCAGTCCCCATTGTTTTTTGA
TGCATTGAAAGGAGAAGCCCCGCAAGTTCAGTTTTCAGTCAATGGGAATGAGTATGGAAC
AGGTTATTACCTTGCTGATGGTATATATCCAGAATGGGCTGCCTTCATGAAGACCATACC
TCTTCCCCAAACTGAGAAGCATAAGTTGTTTGCCAAGCACCAAGAAGGGGCAAGGAAAGA
TGTGGAGCGTGCTTTTGGGGTGTTGCAGTCCCGATTTACCATTGTCCGTCGGCCTGCACG
ATTGTGGAGGCGGAAGAGTGTTGGGAGGATCATGCTAGCTTGTGTGATTCTCCACAACAT
GATAGTCGAAGATGAGAGAGAGGAAGCTACCATTCATATTGACTTGAATGAGAATCCAGG
GGCATCGTTTGCGCTGCCTCCTGAAGTGAATATAGGTGGTAATCTGTGTTTTGCTGATGT
GATGCGCAAAAAAGCTACTGTCCGTTCTCGTCCACAACACACCCAACTTAAAAATGATTT
GGTCGAGCACATTTGGCATAAGTTTGGAGATAACCATCATAATTAGTCATGGATTGTGCT
GTTGCTGGTTGTCGTGGGTGCTACTTACAATGAATGAAGGCTTTTGAGGCAAATGGTTTG
GATGTTGCTTTCTACTGAAGTTTCAACTAAACTATGGCTTGTTGTTTCTTTCTACTGAAG
TTCCAACTAAGGCTCTATGCCATTATCGTTGTTCAGCTCAATAACTAATGGTTTGTCTGC
CAGAGAGCTTATTTAGCAGTACTTTTGGTTAATGTTTTCAGAAAGACTCATGTAATGTTT
TAAGCGCCGGTGTCATGGTGCTCAAATCTCATCATATCATGCGTGCAATGTTGCTTG