Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0872700-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:37845044:37852553:-1 gene:Os01g0872700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC-type domain containing protein. (Os01t0872700-01);Similar to predicted protein. (Os01t0872700-02);Hypothetical conserved gene. (Os01t0872700-03)
Sequence	GCGGTGGAGATCGAGGGCGTCAAGGTGCCCGTCGACACCTCCAAGCCCAACCCCAACGGC CTCGAGTTCGACAACCTCTACCTCGACATGAACGGGATCATTCACCCCTGCTTCCACCCC GAGGATAGGCCCTCTCCGACAACATTCGCTGAGGTTTTCCAGTGCATGTTTGATTATATC GATAGGCTATTTGTCATGGTTCGCCCTCGGAAGCTTATGTATATGGCCATTGATGGTGTT GCTCCTCGTGCCAAGATGAACCAGCAACGCTCTAGACGATTCAGAGCTGCAAAAGATGCT GCTGATGCGGCCGCAGAAGAAGAGAGGTTGCGTGAAGAGTTTGAGAGGGAAGGCAGAAAA CTTCCACCAAAACAGCAATCTCAAACATGTGATTCTAACGTTATTACTCCAGGAACAGAG TTTATGGCTGTTTTATCGATTGCTTTGCAGTACTACATCCATCTCAGGTTGAATTATGAT CCTGGATGGAAACAAGTTAAAGTTATTCTTTCTGATGCCAATGTTCCTGGTGAAGGGGAA CATAAAATTATGTCCTACATTCGCGGTCAACGGAATCTCCCTGGATTTAACCCAAATACT CGCCATTGTTTGTATGGCCTGGATGCAGACCTGATCATGTTAGCTCTTGCAACACACGAA GTACATTTCTCTATACTGAGAGAGGTAGTTTATACACCTGGACAGCAGGACAAATGCTTC TTGTGTGGTCAGGTTGGACATCTAGCAGCAAACTGTGAAGGAAAGGTTAAGAGAAAAGCT GGGGAGTTTGATGAAAAAGGTGAAGCTATTGTTCCAAAGAAACCTTACCAGTTCTTGAAT ATATGGACCCTCCGGGAGTACTTAGAATATGAGTTCAGAATGCAGAATCCACCTTTCCCG ATTGACTTTGAACGCATCGTTGATGATTTCATCTTCATGTGTTTTTTTGTTGGCAATGAT TTTCTTCCACATATGCCAACATTAGAGATTCGTGAGGGAGCTATTAACTTGCTAATGGCT GTATACAAGAAGGAATTTCCTTCCATGGGTGGCTATCTAACTGATGCTTGCACGCCGGAT CTGAATAAAGTTGAACACTTTATTCAAGCAGTTGGCTCCTACGAGGATAAAATATTTCAG AAAAGAGCTCGTTTGCATCAGCGTCAAGCTGAAAGGATAAAACGAGAAAAGGCCCAAGCA AAACGAGGGGATGACCTGGATCCCCATGTCAGGGATGATCTTATTGTACCTGTTGCACGC TTCCAAGGGTCTCGCCTTGCATCTGGACCTGTGCCTTCACCATATGAACAAAATGGATCT GACAAAAACAATGGGGGAAAAAATAGTCGTGCTCGGAAAGCTGCACGGGTATCATCGTCA GGTTCAAGCATTGCGGCTGCTATTGTTGAAGCTGAAAATGACCTTGAAGCACAGGAACGC GAAAACAAGGAAGATTTGAAGACAATGCTTAAAGATGCACTTCGTGAGAAATCTGATGTT TTTAATTCTGAAAATCCAGAGGAGGACAAGATAAAACTTGGAGAACCAGGATGGAGGGAA AGGTACTATGAAGAGAAGTTTGGAGCAAGAACACCCGGGCAGATTGAAGAAATACGCAGA GATGTCGTTCTGAAATATACTGAAGGTTTGTGTTGGGTAATGCACTACTATTATGAAGGT GTCTGCTCGTGGCAATGGTTTTACCCTTACCATTATGCTCCTTTTGCTTCGGATTTGAGT GGTCTAGGTCAACTCAATATAACTTTTGAACTTGGGTCACCATTCAAACCGTTTGATCAA CTTATGGGAGTTTTCCCAGCTGCTAGCTCCCATGCACTCCCTGTACAGTATCGGCAATTG ATGACAGATGCAAATTCACCAATAATTGATTTTTATCCAACTGATTTTGAAGTAGATATG AATGGGAAGAGGTATTCATGGCAGGGGATAGCAAAACTGCCCTTCATTGATGAAGCCCGG TTGCTAGCTGAAATTAAAAAAGTTGAGCATACTTTGACGCCTGAAGAAGCAAGGAGAAAC AGTATCATGTTCAATATGCTTTTTGTGAATGGCTCCCATCCACTTTCGCCTTATATCTAC TCCCTCAACAGCAAATTTGGACACCTACCTGACAGAGAGCGAAATGAAATTAAAGAAAAG ATTGATCCTTCTTCTAGTGGAGGAATGAATGGTTACATCTCACTTTGTAGTGGGGATCCG TGCCCTCCTGTCTTCAGGTCTCCTGTTGATGGGTTGGAGGATATCATGGACAATCAAGTG ATATGTACAATCTACAAGCTTCCGGATTCTCATAAGCACATCGCTCGTCCACCTGTTGGT GTAATCATACCCAAGAAGACTGTTGAAGCTACTGACCTGAAACCACCACCTGTGCTATGG CATGAAGACAGTGGTAGGAGGCCTCATGATAATAACAACAGGAGGCCTTATGAAAACAGC AACAGGCAAAACCCAGCTGGAGCAATATCTGGCCGCCAACTTGGGGAAGCTGCCCACCGA CTTGTGGTGAACAGCTTGAATGCTCGGAGTGGCGGACAATACAATACCCCATCGATGCCA TATCAAACCATAATGAATGGCATGCCTTATCCAAATGGGATTCCACCAAGGATGGAGCAG CCTGCTCCTGGCTGGCATGTTCCTGGTGATCTACCAAATGGTCAGGTACCACCAGCTTAT GCATCATCATCAGGTCATTATCAGAACGATAGGTCTGGGCCTTCTCAGTATGGACGAGAT AACCATGGAAGGTACCCATATGCAAGAGACAACCACCATGATTCAAGAGGAAGGGTTCCA CCATACCATCAGAGCGGTGGAAACTCGTATCAATCACATTCTGCTCCATCAGCAGGTCCT GGACGGTATGCGCAACCCCCACCATATGCTGGGGGGTATGGTAGGAGCTACCAGCCTGCA CCGTATGGAGGTGGTCAGCAGTGGCAGCAGCAGCAGCAACAACCTTATGGCTCCTATGCT GGGTCAGGGCCTTATGGGGGTGGGGCACCTCCTGCAAGGCCTAATTCACGACCACAGCAG TCGCAGAACCGTTACAATACCTTAGATAGGAATTCTAACAGGAGACCTCCACCAGGTCAT GGGCGACACTAA

Peptide Sequence

PEP ID	Os01t0872700-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:37845044:37852553:-1 gene:Os01g0872700 transcript:Os01t0872700-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC-type domain containing protein. (Os01t0872700-01);Similar to predicted protein. (Os01t0872700-02);Hypothetical conserved gene. (Os01t0872700-03)
Sequence	AVEIEGVKVPVDTSKPNPNGLEFDNLYLDMNGIIHPCFHPEDRPSPTTFAEVFQCMFDYI DRLFVMVRPRKLMYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLREEFEREGRK LPPKQQSQTCDSNVITPGTEFMAVLSIALQYYIHLRLNYDPGWKQVKVILSDANVPGEGE HKIMSYIRGQRNLPGFNPNTRHCLYGLDADLIMLALATHEVHFSILREVVYTPGQQDKCF LCGQVGHLAANCEGKVKRKAGEFDEKGEAIVPKKPYQFLNIWTLREYLEYEFRMQNPPFP IDFERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFPSMGGYLTDACTPD LNKVEHFIQAVGSYEDKIFQKRARLHQRQAERIKREKAQAKRGDDLDPHVRDDLIVPVAR FQGSRLASGPVPSPYEQNGSDKNNGGKNSRARKAARVSSSGSSIAAAIVEAENDLEAQER ENKEDLKTMLKDALREKSDVFNSENPEEDKIKLGEPGWRERYYEEKFGARTPGQIEEIRR DVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLSGLGQLNITFELGSPFKPFDQ LMGVFPAASSHALPVQYRQLMTDANSPIIDFYPTDFEVDMNGKRYSWQGIAKLPFIDEAR LLAEIKKVEHTLTPEEARRNSIMFNMLFVNGSHPLSPYIYSLNSKFGHLPDRERNEIKEK IDPSSSGGMNGYISLCSGDPCPPVFRSPVDGLEDIMDNQVICTIYKLPDSHKHIARPPVG VIIPKKTVEATDLKPPPVLWHEDSGRRPHDNNNRRPYENSNRQNPAGAISGRQLGEAAHR LVVNSLNARSGGQYNTPSMPYQTIMNGMPYPNGIPPRMEQPAPGWHVPGDLPNGQVPPAY ASSSGHYQNDRSGPSQYGRDNHGRYPYARDNHHDSRGRVPPYHQSGGNSYQSHSAPSAGP GRYAQPPPYAGGYGRSYQPAPYGGGQQWQQQQQQPYGSYAGSGPYGGGAPPARPNSRPQQ SQNRYNTLDRNSNRRPPPGHGRH

Transcript Sequence

Transcript ID	Os01t0872700-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:37845044:37852553:-1 gene:Os01g0872700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, CCHC-type domain containing protein. (Os01t0872700-01);Similar to predicted protein. (Os01t0872700-02);Hypothetical conserved gene. (Os01t0872700-03)
Sequence	GCGGTGGAGATCGAGGGCGTCAAGGTGCCCGTCGACACCTCCAAGCCCAACCCCAACGGC CTCGAGTTCGACAACCTCTACCTCGACATGAACGGGATCATTCACCCCTGCTTCCACCCC GAGGATAGGCCCTCTCCGACAACATTCGCTGAGGTTTTCCAGTGCATGTTTGATTATATC GATAGGCTATTTGTCATGGTTCGCCCTCGGAAGCTTATGTATATGGCCATTGATGGTGTT GCTCCTCGTGCCAAGATGAACCAGCAACGCTCTAGACGATTCAGAGCTGCAAAAGATGCT GCTGATGCGGCCGCAGAAGAAGAGAGGTTGCGTGAAGAGTTTGAGAGGGAAGGCAGAAAA CTTCCACCAAAACAGCAATCTCAAACATGTGATTCTAACGTTATTACTCCAGGAACAGAG TTTATGGCTGTTTTATCGATTGCTTTGCAGTACTACATCCATCTCAGGTTGAATTATGAT CCTGGATGGAAACAAGTTAAAGTTATTCTTTCTGATGCCAATGTTCCTGGTGAAGGGGAA CATAAAATTATGTCCTACATTCGCGGTCAACGGAATCTCCCTGGATTTAACCCAAATACT CGCCATTGTTTGTATGGCCTGGATGCAGACCTGATCATGTTAGCTCTTGCAACACACGAA GTACATTTCTCTATACTGAGAGAGGTAGTTTATACACCTGGACAGCAGGACAAATGCTTC TTGTGTGGTCAGGTTGGACATCTAGCAGCAAACTGTGAAGGAAAGGTTAAGAGAAAAGCT GGGGAGTTTGATGAAAAAGGTGAAGCTATTGTTCCAAAGAAACCTTACCAGTTCTTGAAT ATATGGACCCTCCGGGAGTACTTAGAATATGAGTTCAGAATGCAGAATCCACCTTTCCCG ATTGACTTTGAACGCATCGTTGATGATTTCATCTTCATGTGTTTTTTTGTTGGCAATGAT TTTCTTCCACATATGCCAACATTAGAGATTCGTGAGGGAGCTATTAACTTGCTAATGGCT GTATACAAGAAGGAATTTCCTTCCATGGGTGGCTATCTAACTGATGCTTGCACGCCGGAT CTGAATAAAGTTGAACACTTTATTCAAGCAGTTGGCTCCTACGAGGATAAAATATTTCAG AAAAGAGCTCGTTTGCATCAGCGTCAAGCTGAAAGGATAAAACGAGAAAAGGCCCAAGCA AAACGAGGGGATGACCTGGATCCCCATGTCAGGGATGATCTTATTGTACCTGTTGCACGC TTCCAAGGGTCTCGCCTTGCATCTGGACCTGTGCCTTCACCATATGAACAAAATGGATCT GACAAAAACAATGGGGGAAAAAATAGTCGTGCTCGGAAAGCTGCACGGGTATCATCGTCA GGTTCAAGCATTGCGGCTGCTATTGTTGAAGCTGAAAATGACCTTGAAGCACAGGAACGC GAAAACAAGGAAGATTTGAAGACAATGCTTAAAGATGCACTTCGTGAGAAATCTGATGTT TTTAATTCTGAAAATCCAGAGGAGGACAAGATAAAACTTGGAGAACCAGGATGGAGGGAA AGGTACTATGAAGAGAAGTTTGGAGCAAGAACACCCGGGCAGATTGAAGAAATACGCAGA GATGTCGTTCTGAAATATACTGAAGGTTTGTGTTGGGTAATGCACTACTATTATGAAGGT GTCTGCTCGTGGCAATGGTTTTACCCTTACCATTATGCTCCTTTTGCTTCGGATTTGAGT GGTCTAGGTCAACTCAATATAACTTTTGAACTTGGGTCACCATTCAAACCGTTTGATCAA CTTATGGGAGTTTTCCCAGCTGCTAGCTCCCATGCACTCCCTGTACAGTATCGGCAATTG ATGACAGATGCAAATTCACCAATAATTGATTTTTATCCAACTGATTTTGAAGTAGATATG AATGGGAAGAGGTATTCATGGCAGGGGATAGCAAAACTGCCCTTCATTGATGAAGCCCGG TTGCTAGCTGAAATTAAAAAAGTTGAGCATACTTTGACGCCTGAAGAAGCAAGGAGAAAC AGTATCATGTTCAATATGCTTTTTGTGAATGGCTCCCATCCACTTTCGCCTTATATCTAC TCCCTCAACAGCAAATTTGGACACCTACCTGACAGAGAGCGAAATGAAATTAAAGAAAAG ATTGATCCTTCTTCTAGTGGAGGAATGAATGGTTACATCTCACTTTGTAGTGGGGATCCG TGCCCTCCTGTCTTCAGGTCTCCTGTTGATGGGTTGGAGGATATCATGGACAATCAAGTG ATATGTACAATCTACAAGCTTCCGGATTCTCATAAGCACATCGCTCGTCCACCTGTTGGT GTAATCATACCCAAGAAGACTGTTGAAGCTACTGACCTGAAACCACCACCTGTGCTATGG CATGAAGACAGTGGTAGGAGGCCTCATGATAATAACAACAGGAGGCCTTATGAAAACAGC AACAGGCAAAACCCAGCTGGAGCAATATCTGGCCGCCAACTTGGGGAAGCTGCCCACCGA CTTGTGGTGAACAGCTTGAATGCTCGGAGTGGCGGACAATACAATACCCCATCGATGCCA TATCAAACCATAATGAATGGCATGCCTTATCCAAATGGGATTCCACCAAGGATGGAGCAG CCTGCTCCTGGCTGGCATGTTCCTGGTGATCTACCAAATGGTCAGGTACCACCAGCTTAT GCATCATCATCAGGTCATTATCAGAACGATAGGTCTGGGCCTTCTCAGTATGGACGAGAT AACCATGGAAGGTACCCATATGCAAGAGACAACCACCATGATTCAAGAGGAAGGGTTCCA CCATACCATCAGAGCGGTGGAAACTCGTATCAATCACATTCTGCTCCATCAGCAGGTCCT GGACGGTATGCGCAACCCCCACCATATGCTGGGGGGTATGGTAGGAGCTACCAGCCTGCA CCGTATGGAGGTGGTCAGCAGTGGCAGCAGCAGCAGCAACAACCTTATGGCTCCTATGCT GGGTCAGGGCCTTATGGGGGTGGGGCACCTCCTGCAAGGCCTAATTCACGACCACAGCAG TCGCAGAACCGTTACAATACCTTAGATAGGAATTCTAACAGGAGACCTCCACCAGGTCAT GGGCGACACTAAGCCCAACCTCTGTTTGTTGTACCTGTGGTTTTGTTGTTAGAAAACCTG CGTACTAAAATAGAGAACCTCAGCCTAGTAAAACAGAGAACCTCAGCTTAGAGATATATA TAGAGCAATTTGCATAGTCTCGTGATCGACAAGCTGTTATAGCATCAAAGGTTCTAAGAG GCATGTGTTGTACAATAGAATTGTCAGTTCATCAGATACTGGTGGCTGACTGCCGTTTTT CATTTGTGGCACTCATTATTTTAGCCCCCTAAGGTTGGGAATATGTTTAACAAGTTTTGT ATTTTTAAGATAATAATGTTCTAGGTTAAATTTCAGTTTTGGTGGATATATGTC