Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0871200-04
CDS Infomation	cds chromosome:IRGSP-1.0:1:37775728:37778542:1 gene:Os01g0871200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 033, zinc finger protein description:Zinc finger, C2H2-type domain containing protein. (Os01t0871200-01);Zinc finger, C2H2-type domain containing protein. (Os01t0871200-02);Zinc finger, C2H2-type domain containing protein. (Os01t0871200-03);Zinc finger, C2H2-type domain containing protein. (Os01t0871200-04)
Sequence	ATGGACAGTGGCTTGGGAAGAAGTTCAGAGACATCCTTGAAAGCCTTGCCATCAATGGCA AGTAATGCAACAAGGAATACTGATCCTGACCAACAGGGTGTTCGATTCAGTTCCATGGAC CAGCCTCCATGTTTTGCAAGACCTGGTCAATCGTTCCCTGCTTTTCCTCCACTCTTTGGG GTTCAGTCTTCCAGCTTGTATTTACCTGATGACATTGAAGCTAAAATCGGTAACCAGTTC GAATCAAATCCTTCCCCGAATAATCCTACAATGGATTGGGACCCTCAGGCAATGCTGAGC AACTTATCCTTCCTTGAGCAGAAGATCAAGCAGGTAAAAGACATCGTGCAGTCTATGAGT AATCGTGAGAGCCAAGTTGCTGGTGGTTCCAGCGAGGCACAAGCAAAGCAGCAGCTTGTC ACTGCTGATCTCACTTGTATTATAATTCAGCTTATTTCAACAGCTGGTTCCTTGCTTCCT TCGATGAAGAACCCAATCAGCAGCAACCCGGCACTCAGACATCTCAGTAACACACTTTGT GCTCCTATGATCCTGGGCACCAATTGTAACCTGCGACCAAGCGCAAACGACGAAGCCACA ATTCCTGACATTAGCAAGACCCATGACTATGAGGAGCTGATGAATAGCCTTAATACTACT CAGGCAGAAAGCGATGAGATGATGAACTGCCAAAATCCTTGTGGTGGGGAAGGGTCAGAA CCGATTCCAATGGAAGACCATGATGTGAAGGAGAGTGATGATGGTGGTGAGAGAGAGAAT CTCCCCCCTGGGTCTTATGTAGTATTGCAATTAGAGAAGGAGGAGATTTTAGCACCACAT ACTCACTTCTGCTTGATCTGTGGCAAGGGTTTTAAAAGAGATGCTAATCTTAGGATGCAC ATGAGGGGCCATGGAGACGAGTACAAAACTGCTGCAGCTCTTGCGAAACCTTCGAAAGAT TCTAGCTTAGAGTCTGCACCAGTTACAAGGTACTCGTGCCCATATGTTGGCTGCAAGCGG AACAAAGAGCACAAGAAGTTCCAGCCTCTCAAGACAATCCTGTGTGTGAAGAACCACTAC AAGAGAAGCCACTGTGACAAGAGCTACACCTGCAGCCGTTGCAACACCAAGAAGTTCTCA GTTATCGCGGACTTGAAGACTCATGAAAAGCACTGTGGCCGCGACAAGTGGCTATGCTCG TGTGGAACTACCTTCTCAAGAAAAGACAAGTTATTTGGGCATGTTGCTCTTTTCCAAGGG CACACGCCTGCACTCCCTATGGATGATATCAAAGTAACAGGAGCATCAGAGCAACCTCAA GGCAGCGAGGCGATGAACACCATGGTGGGGAGCGCTGGGTATAACTTCCCCGGTAGCTCA TCGGACGACATCCCAAATCTTGACATGAAGATGGCTGATGATCCACGCTATTTCTCGCCA TTGAGCTTTGATCCTTGCTTCGGTGGGCTTGATGACTTCACTCGACCTGGATTTGACATC TCTGAGAATCCCTTCTCCTTCTTGCCCTCAGGATCATGCAGCTTCGGGCAGCAGAACGGA GACAGCTGA

Peptide Sequence

PEP ID	Os01t0871200-04
PEP Infomation	pep chromosome:IRGSP-1.0:1:37775728:37778542:1 gene:Os01g0871200 transcript:Os01t0871200-04 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 033, zinc finger protein description:Zinc finger, C2H2-type domain containing protein. (Os01t0871200-01);Zinc finger, C2H2-type domain containing protein. (Os01t0871200-02);Zinc finger, C2H2-type domain containing protein. (Os01t0871200-03);Zinc finger, C2H2-type domain containing protein. (Os01t0871200-04)
Sequence	MDSGLGRSSETSLKALPSMASNATRNTDPDQQGVRFSSMDQPPCFARPGQSFPAFPPLFG VQSSSLYLPDDIEAKIGNQFESNPSPNNPTMDWDPQAMLSNLSFLEQKIKQVKDIVQSMS NRESQVAGGSSEAQAKQQLVTADLTCIIIQLISTAGSLLPSMKNPISSNPALRHLSNTLC APMILGTNCNLRPSANDEATIPDISKTHDYEELMNSLNTTQAESDEMMNCQNPCGGEGSE PIPMEDHDVKESDDGGERENLPPGSYVVLQLEKEEILAPHTHFCLICGKGFKRDANLRMH MRGHGDEYKTAAALAKPSKDSSLESAPVTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHY KRSHCDKSYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQG HTPALPMDDIKVTGASEQPQGSEAMNTMVGSAGYNFPGSSSDDIPNLDMKMADDPRYFSP LSFDPCFGGLDDFTRPGFDISENPFSFLPSGSCSFGQQNGDS

Transcript Sequence

Transcript ID	Os01t0871200-04
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:37775728:37778542:1 gene:Os01g0871200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 033, zinc finger protein description:Zinc finger, C2H2-type domain containing protein. (Os01t0871200-01);Zinc finger, C2H2-type domain containing protein. (Os01t0871200-02);Zinc finger, C2H2-type domain containing protein. (Os01t0871200-03);Zinc finger, C2H2-type domain containing protein. (Os01t0871200-04)
Sequence	ACGGTGACTCGACTAGTATTTCCCCTCGCTCGCCGTCGACTCCTCCGCTCGCCGCCGCCG CCGCCCTCGCCGTCGCCGTGGCCTCCGCCGATCCGATCCCAATCCATCCCGGCGACCGCG AGCAGGGCGCGGGGCTTCGTCGTTCGTCCTGCTGATTCCGCCGCATCGCGTCGCGGTTTT CATGACTGCCCTATAGATCAGCTCCTGATTGGAAGGACTGTAGTTCCATGAGATAGAAGG GCATATTGAAGTAGAATTTGGCCTTTGGTGAATCTAAATGGACAGTGGCTTGGGAAGAAG TTCAGAGACATCCTTGAAAGCCTTGCCATCAATGGCAAGTAATGCAACAAGGAATACTGA TCCTGACCAACAGGGTGTTCGATTCAGTTCCATGGACCAGCCTCCATGTTTTGCAAGACC TGGTCAATCGTTCCCTGCTTTTCCTCCACTCTTTGGGGTTCAGTCTTCCAGCTTGTATTT ACCTGATGACATTGAAGCTAAAATCGGTAACCAGTTCGAATCAAATCCTTCCCCGAATAA TCCTACAATGGATTGGGACCCTCAGGCAATGCTGAGCAACTTATCCTTCCTTGAGCAGAA GATCAAGCAGGTAAAAGACATCGTGCAGTCTATGAGTAATCGTGAGAGCCAAGTTGCTGG TGGTTCCAGCGAGGCACAAGCAAAGCAGCAGCTTGTCACTGCTGATCTCACTTGTATTAT AATTCAGCTTATTTCAACAGCTGGTTCCTTGCTTCCTTCGATGAAGAACCCAATCAGCAG CAACCCGGCACTCAGACATCTCAGTAACACACTTTGTGCTCCTATGATCCTGGGCACCAA TTGTAACCTGCGACCAAGCGCAAACGACGAAGCCACAATTCCTGACATTAGCAAGACCCA TGACTATGAGGAGCTGATGAATAGCCTTAATACTACTCAGGCAGAAAGCGATGAGATGAT GAACTGCCAAAATCCTTGTGGTGGGGAAGGGTCAGAACCGATTCCAATGGAAGACCATGA TGTGAAGGAGAGTGATGATGGTGGTGAGAGAGAGAATCTCCCCCCTGGGTCTTATGTAGT ATTGCAATTAGAGAAGGAGGAGATTTTAGCACCACATACTCACTTCTGCTTGATCTGTGG CAAGGGTTTTAAAAGAGATGCTAATCTTAGGATGCACATGAGGGGCCATGGAGACGAGTA CAAAACTGCTGCAGCTCTTGCGAAACCTTCGAAAGATTCTAGCTTAGAGTCTGCACCAGT TACAAGGTACTCGTGCCCATATGTTGGCTGCAAGCGGAACAAAGAGCACAAGAAGTTCCA GCCTCTCAAGACAATCCTGTGTGTGAAGAACCACTACAAGAGAAGCCACTGTGACAAGAG CTACACCTGCAGCCGTTGCAACACCAAGAAGTTCTCAGTTATCGCGGACTTGAAGACTCA TGAAAAGCACTGTGGCCGCGACAAGTGGCTATGCTCGTGTGGAACTACCTTCTCAAGAAA AGACAAGTTATTTGGGCATGTTGCTCTTTTCCAAGGGCACACGCCTGCACTCCCTATGGA TGATATCAAAGTAACAGGAGCATCAGAGCAACCTCAAGGCAGCGAGGCGATGAACACCAT GGTGGGGAGCGCTGGGTATAACTTCCCCGGTAGCTCATCGGACGACATCCCAAATCTTGA CATGAAGATGGCTGATGATCCACGCTATTTCTCGCCATTGAGCTTTGATCCTTGCTTCGG TGGGCTTGATGACTTCACTCGACCTGGATTTGACATCTCTGAGAATCCCTTCTCCTTCTT GCCCTCAGGATCATGCAGCTTCGGGCAGCAGAACGGAGACAGCTGATCGAGGCCAACGTT AACGATGACGGCAATGGCCTTGCCTACCTTTGTGTACCTTGTCTAGCCCTATTCTTCCTC TGTTGAAGGAGCCATTTTAGGTCATTCCTTCTTCCTGAAGTGTACTTTATTTTATGATCA TCAGTAATGATCAAGTACTTTTTATCTTTCCTTATAGATTGAGATAGCCCAATCTTGGTA TATATATGCAAGAAGCGTTTCTAATTATCTGAATTGGTGCCATTGTTGTAGTGCCTACAC CTTGTCATAACATGACATCAACATGTACATGACAATAAAATTCTCTTTCTG