Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0871100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:37763432:37770402:1 gene:Os01g0871100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha/beta hydrolase fold-1 domain containing protein. (Os01t0871100-01)
Sequence

ATGGAGGCGGTCGCCGGCGGCGGAGGCGGAGGCGGAGGGGAGTCGGTCGGGGAGCTGCTG
CTCCGCGCGGCGGCGATGGTGCCAGCGGAGCACTACGCGCTCGCGGCGCTCGCCGTGGTG
TCGGTCCTCGCGTACGGGTTCCTGGAGCTGCACTTCCTCGGGGACCTCCTCCGCGGGTTC
CGCGGCGGCCGCGTCGAGCTCACCTTCCACCCGGCCTCCGAGATCTACCACCGCGTAGCC
TCCAAGTGCCGCTCCCTCCACGGCAGGTATCTGGCGACGCCTTGGCTCGCCAGCCCACAT
TTGCAGACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCACATACAAAAGGCAA
TTGTACACAGTACATGATGGTGGGACCATTGCTTTGGACTGGCTGCTTGCCACTGATTCA
AAGGGTTCAGATGGGATCCTTTCTGAGGATGCTTCAGCACCACTTGTAGTTATTGTACCT
GGATTAACTAGTGATTCTGCTGCTGCTTATGTAAAACACATGGCTTATTCCATGGCAACG
AAGGGGTGTAACACTGTTGTAAGCAATCACAGGGGTCTTGGTGGTGTGTCCATTACTTCA
GATTGCCTCTACAATGCTGGATGGACAGAAGATCTCCGAGAAGTCATTAATTATCTCCAT
CACAAATATCCAAAGGCTCCAATGCTCTGTGTTGGTACAAGCATAGGGGCCAACATTGTG
GTCAAATATCTTGGAGAAGAAGGTGAGAATACTCCTGTGGCTGGTGCTGCATCTATTTGT
TCTCCCTGGGATCTGGTGGTGGGCGACCGATTTATTTCCCGCAAGCTTGTGCAGCGGTTT
TACGACAAAGCCCTTGCCTTTGGTCTTAAGGGATATGCAAAGCTGCATGAACCTGTGTTG
GTTCGACTTGCAAATTGGGAAGGTATTAAAAAGTCACGCTCTATCCGGGAATTTGACCAC
CATGCCACTTGCATGGTTGCAAAATATGAGACAGTAGATACCTACTACCGCCGTTGCAGC
AGTGCCAGTTATGTTGGTAATGTGTCAGTTCCCTTGCTATGTGTCAATGCTTTGGATGAC
CCCCTCTGCACAAGGGAGGCCATCCCTTGGGATGAGTGCAGGGCCAACAAGAACATTGTT
TTGGCTACTACTCCGAATGGCGGTCATCTTGCATTCTTTCAAGGACTAACTGCTGGAAGA
CTATGGTGGGTCGGAGCTGTTTCTGAGTTCCTCTTCGCTCTGCTTGACAGTAAATACATG
CATCAGCAAAAGGCACAAGACCATATTTTGCGTTCTTCCTTGGAGTCGTCCATCGATAAG
AGCCCATATGTCAACGTCATGGAAGATGGAATGATAGCTCCGGTGACAGATGATGGCCCT
TGTGATGATATCACCCCTTCTCACCAGGTTAATGACATAAAACAAGATAATGGGGATTTT
ACGCAACAGAATGAACACACCAGGGAAGTAGATGATAAAAATATCACAGAAGTAAATGCA
ATGCCTTCCCAAAGCCCTGAACAGTCTGCAGGACAGCAAGTAGAGGAACACTACGTTGGT
AAGTTTCATGAGGCCATTGCTCCAGTTAAGAGATCCATAAACCAACTCACTCGGTACCAG
GGTAAGTCAGTCTGGTTGCTTGCTTATATTGCTTTTGTAACATCATGGCCACTCCTTGGT
TCCTTAGCTTTTATCGCATTTAGGAAAAAGTTCAGGAATAATTTGCTAGCTAAGTGGCTG
AGAAGATAA

Peptide Sequence

PEP ID

Os01t0871100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:37763432:37770402:1 gene:Os01g0871100 transcript:Os01t0871100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha/beta hydrolase fold-1 domain containing protein. (Os01t0871100-01)
Sequence

MEAVAGGGGGGGGESVGELLLRAAAMVPAEHYALAALAVVSVLAYGFLELHFLGDLLRGF
RGGRVELTFHPASEIYHRVASKCRSLHGRYLATPWLASPHLQTLFLGISGRPPSFTYKRQ
LYTVHDGGTIALDWLLATDSKGSDGILSEDASAPLVVIVPGLTSDSAAAYVKHMAYSMAT
KGCNTVVSNHRGLGGVSITSDCLYNAGWTEDLREVINYLHHKYPKAPMLCVGTSIGANIV
VKYLGEEGENTPVAGAASICSPWDLVVGDRFISRKLVQRFYDKALAFGLKGYAKLHEPVL
VRLANWEGIKKSRSIREFDHHATCMVAKYETVDTYYRRCSSASYVGNVSVPLLCVNALDD
PLCTREAIPWDECRANKNIVLATTPNGGHLAFFQGLTAGRLWWVGAVSEFLFALLDSKYM
HQQKAQDHILRSSLESSIDKSPYVNVMEDGMIAPVTDDGPCDDITPSHQVNDIKQDNGDF
TQQNEHTREVDDKNITEVNAMPSQSPEQSAGQQVEEHYVGKFHEAIAPVKRSINQLTRYQ
GKSVWLLAYIAFVTSWPLLGSLAFIAFRKKFRNNLLAKWLRR

Transcript Sequence

Transcript ID

Os01t0871100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:37763432:37770402:1 gene:Os01g0871100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha/beta hydrolase fold-1 domain containing protein. (Os01t0871100-01)
Sequence

ATCCCACAACGTCCGTGAATCGCCCTCTCCTCGAAACTGCCGCTCGAATTGCTTCGTCGT
CCTCGCCTCCGGTCTCCGCGCGCGACGCGCCGCCTCTTCCCGTCGGCTCGTCGGCGCCGC
GGCCGCACCCGAGGCCTAGAGAGCGCGCGGGGTCGCGGCCTCGACGGGGTTTTCCTCCCC
CATGGAGGCGGTCGCCGGCGGCGGAGGCGGAGGCGGAGGGGAGTCGGTCGGGGAGCTGCT
GCTCCGCGCGGCGGCGATGGTGCCAGCGGAGCACTACGCGCTCGCGGCGCTCGCCGTGGT
GTCGGTCCTCGCGTACGGGTTCCTGGAGCTGCACTTCCTCGGGGACCTCCTCCGCGGGTT
CCGCGGCGGCCGCGTCGAGCTCACCTTCCACCCGGCCTCCGAGATCTACCACCGCGTAGC
CTCCAAGTGCCGCTCCCTCCACGGCAGGTATCTGGCGACGCCTTGGCTCGCCAGCCCACA
TTTGCAGACACTGTTCCTGGGTATCTCCGGGAGGCCACCTTCGTTCACATACAAAAGGCA
ATTGTACACAGTACATGATGGTGGGACCATTGCTTTGGACTGGCTGCTTGCCACTGATTC
AAAGGGTTCAGATGGGATCCTTTCTGAGGATGCTTCAGCACCACTTGTAGTTATTGTACC
TGGATTAACTAGTGATTCTGCTGCTGCTTATGTAAAACACATGGCTTATTCCATGGCAAC
GAAGGGGTGTAACACTGTTGTAAGCAATCACAGGGGTCTTGGTGGTGTGTCCATTACTTC
AGATTGCCTCTACAATGCTGGATGGACAGAAGATCTCCGAGAAGTCATTAATTATCTCCA
TCACAAATATCCAAAGGCTCCAATGCTCTGTGTTGGTACAAGCATAGGGGCCAACATTGT
GGTCAAATATCTTGGAGAAGAAGGTGAGAATACTCCTGTGGCTGGTGCTGCATCTATTTG
TTCTCCCTGGGATCTGGTGGTGGGCGACCGATTTATTTCCCGCAAGCTTGTGCAGCGGTT
TTACGACAAAGCCCTTGCCTTTGGTCTTAAGGGATATGCAAAGCTGCATGAACCTGTGTT
GGTTCGACTTGCAAATTGGGAAGGTATTAAAAAGTCACGCTCTATCCGGGAATTTGACCA
CCATGCCACTTGCATGGTTGCAAAATATGAGACAGTAGATACCTACTACCGCCGTTGCAG
CAGTGCCAGTTATGTTGGTAATGTGTCAGTTCCCTTGCTATGTGTCAATGCTTTGGATGA
CCCCCTCTGCACAAGGGAGGCCATCCCTTGGGATGAGTGCAGGGCCAACAAGAACATTGT
TTTGGCTACTACTCCGAATGGCGGTCATCTTGCATTCTTTCAAGGACTAACTGCTGGAAG
ACTATGGTGGGTCGGAGCTGTTTCTGAGTTCCTCTTCGCTCTGCTTGACAGTAAATACAT
GCATCAGCAAAAGGCACAAGACCATATTTTGCGTTCTTCCTTGGAGTCGTCCATCGATAA
GAGCCCATATGTCAACGTCATGGAAGATGGAATGATAGCTCCGGTGACAGATGATGGCCC
TTGTGATGATATCACCCCTTCTCACCAGGTTAATGACATAAAACAAGATAATGGGGATTT
TACGCAACAGAATGAACACACCAGGGAAGTAGATGATAAAAATATCACAGAAGTAAATGC
AATGCCTTCCCAAAGCCCTGAACAGTCTGCAGGACAGCAAGTAGAGGAACACTACGTTGG
TAAGTTTCATGAGGCCATTGCTCCAGTTAAGAGATCCATAAACCAACTCACTCGGTACCA
GGGTAAGTCAGTCTGGTTGCTTGCTTATATTGCTTTTGTAACATCATGGCCACTCCTTGG
TTCCTTAGCTTTTATCGCATTTAGGAAAAAGTTCAGGAATAATTTGCTAGCTAAGTGGCT
GAGAAGATAAATAAGTTGTGTTCCAACAGTTTTTTTTTTTCATTTGCATCATGTAAAACT
CAGAATTGTTTAAAGGCTTGAAAAGCCATTCGATCTC