Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0867700-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:37576887:37579107:1 gene:Os01g0867700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Yip1 domain containing protein. (Os01t0867700-01)
Sequence

ATGTCGCACAACCACGGCGACACGATCCCGCTCCACCCGTCGTCGGCGCAGTCCGACATG
GACGAGATCGAGAGCCTCATCTACGCGGCGCCCTCCGCCACCGTCCTCCCGGCGCGGCCG
CCGTCCCCGCCGCGCGCCTCCATCCCGGTCTCCACCTCCCCGGCCCCGCTCCCGGCCCCC
GCCAAGCCCTCCCTCCCCGGCGCGTCCGTCCCCATCATCGTGCCCCAGGCGCCGCCCGCT
TCCGTCTCCGTCCCCATCGCCTCCGACGGCTTCGGCCCCCCGCCCAACACGCTCACCGAG
CCCGTGTGGGACACCGTCAAGCGCGACCTCGCCCGCATCGTCAGCAACCTCAAGCTCGTC
GTCTTCCCCAACCCCTACCGCGAGGACCCCGGCAAGGCGCTCAGGGATTGGGATCTCTGG
GGGCCCTTCTTCTTCATCGTTTTCCTCGGCCTCACACTCTCCTGGTCCGCCTCCGTCAAG
AAGTCTGAAGTATTTGCTGTTGCATTCGCTGTCCTAGCAGCTGGGGCTATAATTCTTACG
CTAAATGTCTTGCTTCTGGGTGGGCACATTATCTTCTTCCAGAGCCTCAGTCTTCTTGGC
TACTGTCTGTTTCCTCTGGATGTTGGAGCTCTAGTTTGCATGCTGAAGGACAATGTCATA
CTAAAGATCATCGTAGTGACCGTCACATTGGCATGGAGTTCCTGGGCTGCATATCCATTC
ATGAGTGCTGCAGTTAACCCAAGGAGAAAGGCTCTGGCCCTGTATCCCGTCTTCCTCATG
TATATTTCAGTTGGTTTCCTCATAATTGCCATAGACTAA

Peptide Sequence

PEP ID

Os01t0867700-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:37576887:37579107:1 gene:Os01g0867700 transcript:Os01t0867700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Yip1 domain containing protein. (Os01t0867700-01)
Sequence

MSHNHGDTIPLHPSSAQSDMDEIESLIYAAPSATVLPARPPSPPRASIPVSTSPAPLPAP
AKPSLPGASVPIIVPQAPPASVSVPIASDGFGPPPNTLTEPVWDTVKRDLARIVSNLKLV
VFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFAVLAAGAIILT
LNVLLLGGHIIFFQSLSLLGYCLFPLDVGALVCMLKDNVILKIIVVTVTLAWSSWAAYPF
MSAAVNPRRKALALYPVFLMYISVGFLIIAID

Transcript Sequence

Transcript ID

Os01t0867700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:37576887:37579107:1 gene:Os01g0867700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Yip1 domain containing protein. (Os01t0867700-01)
Sequence

AGTCGCAGGCCGGCAGGCAGGTACGCACCCACCCGCAAATCCGCACCTCCCCACCCCAAC
TCTCCTCCCAAACCCAGCACGCACTCCCGCGAGATCTCTCTCCGCCGCGCCACCGACGCG
CCAGATCCACCACCGCCACCGCCATGTCGCACAACCACGGCGACACGATCCCGCTCCACC
CGTCGTCGGCGCAGTCCGACATGGACGAGATCGAGAGCCTCATCTACGCGGCGCCCTCCG
CCACCGTCCTCCCGGCGCGGCCGCCGTCCCCGCCGCGCGCCTCCATCCCGGTCTCCACCT
CCCCGGCCCCGCTCCCGGCCCCCGCCAAGCCCTCCCTCCCCGGCGCGTCCGTCCCCATCA
TCGTGCCCCAGGCGCCGCCCGCTTCCGTCTCCGTCCCCATCGCCTCCGACGGCTTCGGCC
CCCCGCCCAACACGCTCACCGAGCCCGTGTGGGACACCGTCAAGCGCGACCTCGCCCGCA
TCGTCAGCAACCTCAAGCTCGTCGTCTTCCCCAACCCCTACCGCGAGGACCCCGGCAAGG
CGCTCAGGGATTGGGATCTCTGGGGGCCCTTCTTCTTCATCGTTTTCCTCGGCCTCACAC
TCTCCTGGTCCGCCTCCGTCAAGAAGTCTGAAGTATTTGCTGTTGCATTCGCTGTCCTAG
CAGCTGGGGCTATAATTCTTACGCTAAATGTCTTGCTTCTGGGTGGGCACATTATCTTCT
TCCAGAGCCTCAGTCTTCTTGGCTACTGTCTGTTTCCTCTGGATGTTGGAGCTCTAGTTT
GCATGCTGAAGGACAATGTCATACTAAAGATCATCGTAGTGACCGTCACATTGGCATGGA
GTTCCTGGGCTGCATATCCATTCATGAGTGCTGCAGTTAACCCAAGGAGAAAGGCTCTGG
CCCTGTATCCCGTCTTCCTCATGTATATTTCAGTTGGTTTCCTCATAATTGCCATAGACT
AATGGTGGGCTGAACTTGTAGTCAATACCTAAACCGCTGAGATTTTCCTCATTGAACCAC
CAGAATACATACAGGTTTGGGCAGAGAATACGCCCCCTTAAG