Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0865700-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:37464074:37465567:-1 gene:Os01g0865700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plant U-box-containing protein 31, U-box protein 31 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0865700-00)
Sequence

ATGGCAGCGATGGCGAGCGCGGCGGCCGAGGTGCCGTCCTACTTCGTCTGCCCGATCTCG
CTGCAGCTCATGCGCGACCCCGTCACGCTCCCTACGGGGATCTCGTACGACCGCGCCGCG
ATCGCGCGGTGGCTCGCCGCGCCGGGGGCCCGCCGGACGTGTCCCGTCACGCGGCAGCCG
CTCGAGCACGGGCTGGAGCTCACGCCCAACCACACCCTGCGCCGCCTGATCCAGTCGTGG
GCGGCCTCCGTCTCCCCCGGGTCGGCCGTGGACGAGGAGGTGGCCGCGCTACGACCGGTT
TCGAGCGACGAGGTTGCGTCGCTCCTGTCCGACGCCGCCGCGGCGCAGGTGGGCGCGCTC
AGGAGGCTGCGGGAGCTGGCGGCGGAGTGCGAGGATAGCAGGGCAATGCTGGAGTCCCAG
GGCGGGGTGTTCGACGTGCTATCTCGCGTCGTGACCAGCGGCAGCGCCTGCTCGACGGCG
CGGGAGGAGGCGGTTGGTGTCCTCGCGTCGCTCCGGATCCCGGAGCAGGAGCTGATCGGC
GTCTCGACCAGGCACGGCAACCTGGCGGAGTCCCTCACGGCCGTGCTCCGCTCGTCGAAT
CTCCAGTCGCGGGCGCACGCGGTGCAGCTCGTGAGGACGCTCGCCGACGCGGTGGTCCCG
GCGTGGGTGATCGGCCTCAACGCGGAGCTCCTCGCCGAGGTGGTCGGCGTGGTCCGCGAC
CGCGTCTCGGCGCGGGCCACCAAGGCGTCCCTCCACGCGCTCGCCGCGCTCTGCCCGTAC
GGCCGGCACCGCGTGAAGATCGTGGGCGCCGGCGCGGTGGCGGCGCTGGTGGAGCTGCTG
CTGGACGAGCCCGAGCGGCGCGTGTGCGAGCTGGCGCTGGCCGTGCTGGACCGGCTGTGC
ACGTGCGCGGAGGGGCGCGCGGAGCTGGTGGCGCACGCGGCGGGCGTGGCCGTGGTGGGG
AAGAAGGTGCTGCGGGTGTCGGAGGCGGCGAGCGAGCGGGCGGTGCGCGTGCTGCGGTCG
GTGGCGCGGCACGCGGCGACGCCGGCGGTGCTGCAGGAGATGGCGCAGTGCGGCGTGGTG
GGGAAGCTGTGCCTGGCGCTGCGGTCGGAGCAGTGCGGGGTGAAGACCAAGGAGAAGGCG
CACGAGGTGCTCAAGCTGCACTCCAGGGTCTGGAGGGCCTCGCCATGCTTGTCTCCCAGC
TTCTTGGCGCTTTACCCATCATGA

Peptide Sequence

PEP ID

Os01t0865700-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:37464074:37465567:-1 gene:Os01g0865700 transcript:Os01t0865700-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plant U-box-containing protein 31, U-box protein 31 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0865700-00)
Sequence

MAAMASAAAEVPSYFVCPISLQLMRDPVTLPTGISYDRAAIARWLAAPGARRTCPVTRQP
LEHGLELTPNHTLRRLIQSWAASVSPGSAVDEEVAALRPVSSDEVASLLSDAAAAQVGAL
RRLRELAAECEDSRAMLESQGGVFDVLSRVVTSGSACSTAREEAVGVLASLRIPEQELIG
VSTRHGNLAESLTAVLRSSNLQSRAHAVQLVRTLADAVVPAWVIGLNAELLAEVVGVVRD
RVSARATKASLHALAALCPYGRHRVKIVGAGAVAALVELLLDEPERRVCELALAVLDRLC
TCAEGRAELVAHAAGVAVVGKKVLRVSEAASERAVRVLRSVARHAATPAVLQEMAQCGVV
GKLCLALRSEQCGVKTKEKAHEVLKLHSRVWRASPCLSPSFLALYPS

Transcript Sequence

Transcript ID

Os01t0865700-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:37464074:37465567:-1 gene:Os01g0865700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:plant U-box-containing protein 31, U-box protein 31 description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0865700-00)
Sequence

CCCTCGCGCGCATTCCGGTGAACAAGTGCGTGGCGTGGCGATCGGCTGGTGCACTCCTAC
TACTGGTGACGGATATGGCAGCGATGGCGAGCGCGGCGGCCGAGGTGCCGTCCTACTTCG
TCTGCCCGATCTCGCTGCAGCTCATGCGCGACCCCGTCACGCTCCCTACGGGGATCTCGT
ACGACCGCGCCGCGATCGCGCGGTGGCTCGCCGCGCCGGGGGCCCGCCGGACGTGTCCCG
TCACGCGGCAGCCGCTCGAGCACGGGCTGGAGCTCACGCCCAACCACACCCTGCGCCGCC
TGATCCAGTCGTGGGCGGCCTCCGTCTCCCCCGGGTCGGCCGTGGACGAGGAGGTGGCCG
CGCTACGACCGGTTTCGAGCGACGAGGTTGCGTCGCTCCTGTCCGACGCCGCCGCGGCGC
AGGTGGGCGCGCTCAGGAGGCTGCGGGAGCTGGCGGCGGAGTGCGAGGATAGCAGGGCAA
TGCTGGAGTCCCAGGGCGGGGTGTTCGACGTGCTATCTCGCGTCGTGACCAGCGGCAGCG
CCTGCTCGACGGCGCGGGAGGAGGCGGTTGGTGTCCTCGCGTCGCTCCGGATCCCGGAGC
AGGAGCTGATCGGCGTCTCGACCAGGCACGGCAACCTGGCGGAGTCCCTCACGGCCGTGC
TCCGCTCGTCGAATCTCCAGTCGCGGGCGCACGCGGTGCAGCTCGTGAGGACGCTCGCCG
ACGCGGTGGTCCCGGCGTGGGTGATCGGCCTCAACGCGGAGCTCCTCGCCGAGGTGGTCG
GCGTGGTCCGCGACCGCGTCTCGGCGCGGGCCACCAAGGCGTCCCTCCACGCGCTCGCCG
CGCTCTGCCCGTACGGCCGGCACCGCGTGAAGATCGTGGGCGCCGGCGCGGTGGCGGCGC
TGGTGGAGCTGCTGCTGGACGAGCCCGAGCGGCGCGTGTGCGAGCTGGCGCTGGCCGTGC
TGGACCGGCTGTGCACGTGCGCGGAGGGGCGCGCGGAGCTGGTGGCGCACGCGGCGGGCG
TGGCCGTGGTGGGGAAGAAGGTGCTGCGGGTGTCGGAGGCGGCGAGCGAGCGGGCGGTGC
GCGTGCTGCGGTCGGTGGCGCGGCACGCGGCGACGCCGGCGGTGCTGCAGGAGATGGCGC
AGTGCGGCGTGGTGGGGAAGCTGTGCCTGGCGCTGCGGTCGGAGCAGTGCGGGGTGAAGA
CCAAGGAGAAGGCGCACGAGGTGCTCAAGCTGCACTCCAGGGTCTGGAGGGCCTCGCCAT
GCTTGTCTCCCAGCTTCTTGGCGCTTTACCCATCATGACGACCACCACTCCATTGTTCAT
TCTTCTTCTTTTTTTTTCTCCTTTCTTTCTTTTTGCTGCCATTTTTTTCTTTTTCCAAAT
TTACTTGGATCAAGAGGAGAGAACATGATTGTGCCTAGAGAAAAGATATGTGTATCTCAA
CTGAGCTGTTTTTAGGTTGCTCATTTATTCTTTTGAGGATAATCCCATTTCTTT