Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0864300-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:37406262:37407241:-1 gene:Os01g0864300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os01t0864300-01)
Sequence

ATGGGTGATCACGCAATGGCCAATAATCACGAGCACAAGGTGGACCACCTCGACCAGCCC
TTCTACGGCCCGCCCGTTCTCCCTCCGGTCGAGCCGCTGTCCGCCGCCGCCGCGCGCCGC
CGGTGCGTCGCCGACCCGTACGCGCTCTGCTGCAGGGCGATCCGCGTGCTGACGATCGTG
GTCATCGCCGTCGGCGTGGTGGCGCTGGTGCTCTGGCTCGTGTCCCTGCCCAACGCCCTC
AAGGCCTACGTCGACTCCGCCGAGCTCACCCGCTTCGAGCTCGGCGGCAGCGACGGCGCC
AAGCGGGGCCAGCTGCTGCGGTACAACCTCACCGTGGCCGTGAGCATCCGCAACCCGAAC
CGGGACCAGGCCGTGCTGTACCGGCGGCTGGAGGCGGTGGTGCTCTACGGCGGCGAGAGG
TTCGGGTACGTCGACTTCCCGCGGACGCGGCAGGGGCGGAAGAGCACGATGGTGATCCGG
CCGAGCTTCGTCGGGCAGGGCGTCCTCGCCGGCGCGGCGGCGTTCGGAAGGGAGAAGGAG
GAAGGGTTCTTCAACATCAACGTGAAGCTCCACATGAGGGTGCGTCTCAAGGTGATGGTC
TTCGTGGACAGCGTCGAGTACAGGCCGGACGTGGACTGCTACATCAGGGTGCCCGACCCG
AGCAACGCGACGGCGGTGGCGATGGGGTTCACGGCGACGCGCTGCCGTGTCGACGACTTC
ATGTGA

Peptide Sequence

PEP ID

Os01t0864300-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:37406262:37407241:-1 gene:Os01g0864300 transcript:Os01t0864300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os01t0864300-01)
Sequence

MGDHAMANNHEHKVDHLDQPFYGPPVLPPVEPLSAAAARRRCVADPYALCCRAIRVLTIV
VIAVGVVALVLWLVSLPNALKAYVDSAELTRFELGGSDGAKRGQLLRYNLTVAVSIRNPN
RDQAVLYRRLEAVVLYGGERFGYVDFPRTRQGRKSTMVIRPSFVGQGVLAGAAAFGREKE
EGFFNINVKLHMRVRLKVMVFVDSVEYRPDVDCYIRVPDPSNATAVAMGFTATRCRVDDF
M

Transcript Sequence

Transcript ID

Os01t0864300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:37406262:37407241:-1 gene:Os01g0864300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Harpin-induced 1 domain containing protein. (Os01t0864300-01)
Sequence

ATACTTCTATCCATATCTCGGTCGCTACACGCGTTACATCCGTACGCTTCATACATATAC
TGCTCCTACCTAAGATCGATCGATCAATGCGCTTCTCAACAGGTAATGGGTGATCACGCA
ATGGCCAATAATCACGAGCACAAGGTGGACCACCTCGACCAGCCCTTCTACGGCCCGCCC
GTTCTCCCTCCGGTCGAGCCGCTGTCCGCCGCCGCCGCGCGCCGCCGGTGCGTCGCCGAC
CCGTACGCGCTCTGCTGCAGGGCGATCCGCGTGCTGACGATCGTGGTCATCGCCGTCGGC
GTGGTGGCGCTGGTGCTCTGGCTCGTGTCCCTGCCCAACGCCCTCAAGGCCTACGTCGAC
TCCGCCGAGCTCACCCGCTTCGAGCTCGGCGGCAGCGACGGCGCCAAGCGGGGCCAGCTG
CTGCGGTACAACCTCACCGTGGCCGTGAGCATCCGCAACCCGAACCGGGACCAGGCCGTG
CTGTACCGGCGGCTGGAGGCGGTGGTGCTCTACGGCGGCGAGAGGTTCGGGTACGTCGAC
TTCCCGCGGACGCGGCAGGGGCGGAAGAGCACGATGGTGATCCGGCCGAGCTTCGTCGGG
CAGGGCGTCCTCGCCGGCGCGGCGGCGTTCGGAAGGGAGAAGGAGGAAGGGTTCTTCAAC
ATCAACGTGAAGCTCCACATGAGGGTGCGTCTCAAGGTGATGGTCTTCGTGGACAGCGTC
GAGTACAGGCCGGACGTGGACTGCTACATCAGGGTGCCCGACCCGAGCAACGCGACGGCG
GTGGCGATGGGGTTCACGGCGACGCGCTGCCGTGTCGACGACTTCATGTGATGGACTGGA
CCCTGAAGGGTGCAGCATTGCATTGCACGTATAGGTGACTTCAGATTGTTCATTGTGTAT
ATTATGATCTTCGAGACAGCAAAAGGAAGTTTTTCTTTTCAAACGAATTGAATCAAAAGG
AAGTTTGATCGTCCATGACG