Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0856500-04
CDS Infomation	cds chromosome:IRGSP-1.0:1:37000257:37004643:1 gene:Os01g0856500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:like aux1-1, related to AUX1-1, auxin transporter 1 description:Auxin transporter, Primary root and root hair elongation, Cd stress response (Os01t0856500-01);Amino acid transporter, transmembrane domain containing protein. (Os01t0856500-02);Splicing variant with unknown function (Os01t0856500-03);Similar to auxin transporter-like protein 1. (Os01t0856500-04)
Sequence	ATCAACGACCGGCTGGACAAGCGGACGTGGACGTACATCTTCGGCGCGTGCTGCGCCACC ACGGTGTTCATCCCGTCGTTCCACAACTACCGGATCTGGTCCTTCCTGGGCCTCGGCATG ACCACCTATACCGCTTGGTACCTCGCCATCGCCGCCCTCCTCAACGGCCAGGCCGAAGGC ATCACCCACACCGGTCCAACCAAGCTGGTGCTGTACTTCACCGGCGCCACCAACATCCTC TACACCTTCGGCGGCCACGCCGTCACAGTGGAGATCATGCACGCGATGTGGAAACCGGCC AAGTTCAAGTACATCTACCTGCTGGCGACGCTGTACGTGTTCACGCTGACGCTGCCGTCG GCGTCGGCCATGTACTGGGCGTTCGGGGACGAGCTGCTGACCCACTCCAACGCCTTCTCG CTGCTGCCCAAGACCGGGTGGCGCGACGCGGCGGTGATACTGATGCTGATCCACCAGTTC ATCACGTTCGGGTTCGCGTGCACGCCGCTCTACTTCGTGTGGGAGAAGGTGATCGGCATG CACGACACCAAGAGCATCTGCCTCAGGGCGCTCGCGCGGCTCCCCATCGTCGTCCCCATC TGGTTCCTCGCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTCGGCGCGCTC CTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACG GCCTCCGCGCGCATGAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGG ATGTTCGTGCTCAACATGTTCATCGTGGTGTGGGTGCTCGTGGTGGGCTTCGGGCTCGGC GGCTGGGCCAGCATGGTCAACTTCATCAGGCAGATCGACACGTTCGGGCTCTTCGCCAAG TGCTACCAGTGTCCCAAGCCCGCCCCGGCGTTGGCGCAGTCGCCGGTGCCATTGCCGCAC CACTAG

Peptide Sequence

PEP ID	Os01t0856500-04
PEP Infomation	pep chromosome:IRGSP-1.0:1:37000257:37004643:1 gene:Os01g0856500 transcript:Os01t0856500-04 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:like aux1-1, related to AUX1-1, auxin transporter 1 description:Auxin transporter, Primary root and root hair elongation, Cd stress response (Os01t0856500-01);Amino acid transporter, transmembrane domain containing protein. (Os01t0856500-02);Splicing variant with unknown function (Os01t0856500-03);Similar to auxin transporter-like protein 1. (Os01t0856500-04)
Sequence	INDRLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLAIAALLNGQAEG ITHTGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPAKFKYIYLLATLYVFTLTLPS ASAMYWAFGDELLTHSNAFSLLPKTGWRDAAVILMLIHQFITFGFACTPLYFVWEKVIGM HDTKSICLRALARLPIVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHILTYRT ASARMNAAEKPPFFLPSWTGMFVLNMFIVVWVLVVGFGLGGWASMVNFIRQIDTFGLFAK CYQCPKPAPALAQSPVPLPHH

Transcript Sequence

Transcript ID	Os01t0856500-04
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:37000257:37004643:1 gene:Os01g0856500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:like aux1-1, related to AUX1-1, auxin transporter 1 description:Auxin transporter, Primary root and root hair elongation, Cd stress response (Os01t0856500-01);Amino acid transporter, transmembrane domain containing protein. (Os01t0856500-02);Splicing variant with unknown function (Os01t0856500-03);Similar to auxin transporter-like protein 1. (Os01t0856500-04)
Sequence	CATCAACGACCGGCTGGACAAGCGGACGTGGACGTACATCTTCGGCGCGTGCTGCGCCAC CACGGTGTTCATCCCGTCGTTCCACAACTACCGGATCTGGTCCTTCCTGGGCCTCGGCAT GACCACCTATACCGCTTGGTACCTCGCCATCGCCGCCCTCCTCAACGGCCAGGCCGAAGG CATCACCCACACCGGTCCAACCAAGCTGGTGCTGTACTTCACCGGCGCCACCAACATCCT CTACACCTTCGGCGGCCACGCCGTCACAGTGGAGATCATGCACGCGATGTGGAAACCGGC CAAGTTCAAGTACATCTACCTGCTGGCGACGCTGTACGTGTTCACGCTGACGCTGCCGTC GGCGTCGGCCATGTACTGGGCGTTCGGGGACGAGCTGCTGACCCACTCCAACGCCTTCTC GCTGCTGCCCAAGACCGGGTGGCGCGACGCGGCGGTGATACTGATGCTGATCCACCAGTT CATCACGTTCGGGTTCGCGTGCACGCCGCTCTACTTCGTGTGGGAGAAGGTGATCGGCAT GCACGACACCAAGAGCATCTGCCTCAGGGCGCTCGCGCGGCTCCCCATCGTCGTCCCCAT CTGGTTCCTCGCCATCATCTTCCCCTTCTTCGGCCCCATCAACTCCGCCGTCGGCGCGCT CCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTAC GGCCTCCGCGCGCATGAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGG GATGTTCGTGCTCAACATGTTCATCGTGGTGTGGGTGCTCGTGGTGGGCTTCGGGCTCGG CGGCTGGGCCAGCATGGTCAACTTCATCAGGCAGATCGACACGTTCGGGCTCTTCGCCAA GTGCTACCAGTGTCCCAAGCCCGCCCCGGCGTTGGCGCAGTCGCCGGTGCCATTGCCGCA CCACTAGCGCGCGCCCGTTCCGCACCACCGCCGCCGCCGCGGCGGACCGTGACAACGTGC ACCGCCGAGCCCGGAGCAAGGAACCTCGCTCTCCTGGCCGGCACGGCTGCAAAAATTCAG TGTTGCTTAGGTTTTGGTCGCCTTGTAATATACAAAGCCTCTCCTCCTGTGCTAGGGTGT CACACCAAAATGGTAGAAGAAGAAGAGGGCATGGGTCCCTACGATCTTGCCCCGGGCCGT CCGCTGCCGCGTTGCTTTCCCCCGATCCTCGATGGTGTCCTTGTGTTTGTTTGGCTTGCC CCTCCCTCTGGCGATATATATGTGATGGTCGTCATGGCTTATAAAGATTTTCAGCTCATG TCACATTTTCATATGATATGATGTAGCATATCACTATAGGGTTATTTGTTTTCTACCTGG ATGGAGCTTGGTCCATGTTGTCTAGCGCGAGCAATTGTAATCGGCGATTCCTCGTGCTAG CTAAAGGCAAAACACGGAGGCCTTTGTTTATTGCGTTCCGCTTTGGATGTTCTT