Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0855200-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:36894607:36897206:1 gene:Os01g0855200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os01t0855200-01)
Sequence

ATGGGCATCCAGGTCGCGGCCGTGACGTCGTCGCCATGCGCCGTCACGACGTCGTCGTCG
TCGTCGCTGTCGCCTTCGTCGTCTGCCGCCGCGACGACGTCGCGGCGGCATGGCGTTCTT
GGAGGTGTCAGGCTGTCGAGAGGGCAGTCGTCGCTGGCTAGCTGGAGCGTCGGTATGACC
CGCCGGCGCGCCGGCGGGCACCAGATGGCAAGGCGCGCTCTCAGCGCTAGCATTGACAGC
ATCGGGAGCGACGGCGGGGACGACGAGGAGTTCTTGCGGAGGATTCAGGAGCTGGCGGTG
GGGCTGCACCCTGGCGCCGCTGGCTGCGGGTGGCCGGCGAGCGTGGAGCGGAGCGCGAGC
AGCGTGGGGTTGCCGCTGTCGCTGCGGATGCTCAAGCGGAAGAAGCAGCAGCAGCAGCAG
CAGGGCCGGTGGGACGAGCGGCTGATCGACTGCGCCGGCGAGTCCGCGCGCGGCGCGGTG
GGGCGCGCGTTCTCGTCGATGGTGCTCATCATCCGGGAGCTGCAGAGCTTCACGCTGCAG
ATGCGGCAGGCGCTCTTCTACGAGGACCTGCAGCGCGTGCTCGCGCGCGTCCACGCCGAG
ATGCACGCCTCCTTCGTGTGGCTCTTCCAGCACATCTTCTCCGGCACCCCCGCCCTCATG
GTCTCCGTGATGCTTCTGCTCGCCAACTTCACCGTCTACTCCATGGGCGACAGCGTCGCG
GCCGCCGCCACGCTCCCGCCTCCCCAGCCCCCCGCGGCGACTGTGGCGATGGTCGACACC
CAGCACGCGGAGCAGTCTCATTCCCACCAGCGGTTCGACCATGCCTCGCTCAAGACGTTG
TCCATCGGCCGAACGGCCTCGGTGGGTGGCAACAGCGGCGGCGGCGGCAAGGTGCGGCCG
GTCGCCGGGGCAACCGGCGACGGTCGCTCGGACGAGTGGTCAAATCGGCAAAGCGGCGCG
GTGTTGCCGCAGGATGCGTCACAGGGTACGCCGGGAGCTGGCGCGGAGGAGGCCGTGCCC
GTGTCAGAAGCAATGGCCGTGGAGGAGACAGAGGACGAACTGGTCATCTGGAAAAGGATA
GCCGATGAGGCTACCAGGATGCAGGCGAGCGTTCGCGCCGAGGCGCTGATGGACCCGGAC
ACACTGGGGCAGCTCGTGGCGCCGGTGGAGGCCAAGCTGGACACGGAGGACACGGCGGAG
TTCGCGGCGACGGAGGAGCGGTACGAGCGAGCCGTGTCCGAGGAGCCAGACAACTCGCTG
CTGCTGTCCAACTTTGCCCAGTTCCTGTACACGGTGCAGCGCGACCACGATCGGGCGGAG
CACTACTTCAAGCGGGCGGTGCGCGCGGAGCCGGCGGACGCGGAGGCGATGGGTCGGTAC
GCGACTTTCCTGTGGAAAGCGCGCAATGACCTCGCGGCCGCGGAGGAGACGTACCAGGAG
GCCATCGCCGCCGAACCCAGCAACTCGCACCACGCGGCAGCCTACGCGCACTTCCTCTGG
AACACGGGCGGCGATGACACATGCTACCCCCTCGACTGA

Peptide Sequence

PEP ID

Os01t0855200-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:36894607:36897206:1 gene:Os01g0855200 transcript:Os01t0855200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os01t0855200-01)
Sequence

MGIQVAAVTSSPCAVTTSSSSSLSPSSSAAATTSRRHGVLGGVRLSRGQSSLASWSVGMT
RRRAGGHQMARRALSASIDSIGSDGGDDEEFLRRIQELAVGLHPGAAGCGWPASVERSAS
SVGLPLSLRMLKRKKQQQQQQGRWDERLIDCAGESARGAVGRAFSSMVLIIRELQSFTLQ
MRQALFYEDLQRVLARVHAEMHASFVWLFQHIFSGTPALMVSVMLLLANFTVYSMGDSVA
AAATLPPPQPPAATVAMVDTQHAEQSHSHQRFDHASLKTLSIGRTASVGGNSGGGGKVRP
VAGATGDGRSDEWSNRQSGAVLPQDASQGTPGAGAEEAVPVSEAMAVEETEDELVIWKRI
ADEATRMQASVRAEALMDPDTLGQLVAPVEAKLDTEDTAEFAATEERYERAVSEEPDNSL
LLSNFAQFLYTVQRDHDRAEHYFKRAVRAEPADAEAMGRYATFLWKARNDLAAAEETYQE
AIAAEPSNSHHAAAYAHFLWNTGGDDTCYPLD

Transcript Sequence

Transcript ID

Os01t0855200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:36894607:36897206:1 gene:Os01g0855200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide-like helical domain containing protein. (Os01t0855200-01)
Sequence

TATTTTTGTTCTTGATTTTTTTTTCTCTCCCCCCCCCCTCCAAAGTATATACTGCTTGCC
ATTCGTATCTCGAGTGTGTGAGCGCCTAATTTTGGCTCAAGCCTATATTAAGGAGGGGCG
TACCGTATCGTTTCTATTTTGTTTCGTGAAACTGGTGTCACCGGTAGCGGCAGTAGCAGG
AGTGCTAGATCCTTCACGAGCTGCGTGGGGGTGGTTGACCAGGACACGCCTCCCGGATCC
TGAAATAAGGCCACCGCTCGTTTCCCCCTCCCCCTCTTCCTCTTCCTCTTCCTTTGCCAC
CCCCTCGCATTTAGCCAGCCTCCCACGGTTGTGGAGCTGTGTGGGCCATTTCCCAACCGT
CGCTCCGGTGGGTGGCCGGGAGGGTGGTCGCTGCGACCCATGGGCATCCAGGTCGCGGCC
GTGACGTCGTCGCCATGCGCCGTCACGACGTCGTCGTCGTCGTCGCTGTCGCCTTCGTCG
TCTGCCGCCGCGACGACGTCGCGGCGGCATGGCGTTCTTGGAGGTGTCAGGCTGTCGAGA
GGGCAGTCGTCGCTGGCTAGCTGGAGCGTCGGTATGACCCGCCGGCGCGCCGGCGGGCAC
CAGATGGCAAGGCGCGCTCTCAGCGCTAGCATTGACAGCATCGGGAGCGACGGCGGGGAC
GACGAGGAGTTCTTGCGGAGGATTCAGGAGCTGGCGGTGGGGCTGCACCCTGGCGCCGCT
GGCTGCGGGTGGCCGGCGAGCGTGGAGCGGAGCGCGAGCAGCGTGGGGTTGCCGCTGTCG
CTGCGGATGCTCAAGCGGAAGAAGCAGCAGCAGCAGCAGCAGGGCCGGTGGGACGAGCGG
CTGATCGACTGCGCCGGCGAGTCCGCGCGCGGCGCGGTGGGGCGCGCGTTCTCGTCGATG
GTGCTCATCATCCGGGAGCTGCAGAGCTTCACGCTGCAGATGCGGCAGGCGCTCTTCTAC
GAGGACCTGCAGCGCGTGCTCGCGCGCGTCCACGCCGAGATGCACGCCTCCTTCGTGTGG
CTCTTCCAGCACATCTTCTCCGGCACCCCCGCCCTCATGGTCTCCGTGATGCTTCTGCTC
GCCAACTTCACCGTCTACTCCATGGGCGACAGCGTCGCGGCCGCCGCCACGCTCCCGCCT
CCCCAGCCCCCCGCGGCGACTGTGGCGATGGTCGACACCCAGCACGCGGAGCAGTCTCAT
TCCCACCAGCGGTTCGACCATGCCTCGCTCAAGACGTTGTCCATCGGCCGAACGGCCTCG
GTGGGTGGCAACAGCGGCGGCGGCGGCAAGGTGCGGCCGGTCGCCGGGGCAACCGGCGAC
GGTCGCTCGGACGAGTGGTCAAATCGGCAAAGCGGCGCGGTGTTGCCGCAGGATGCGTCA
CAGGGTACGCCGGGAGCTGGCGCGGAGGAGGCCGTGCCCGTGTCAGAAGCAATGGCCGTG
GAGGAGACAGAGGACGAACTGGTCATCTGGAAAAGGATAGCCGATGAGGCTACCAGGATG
CAGGCGAGCGTTCGCGCCGAGGCGCTGATGGACCCGGACACACTGGGGCAGCTCGTGGCG
CCGGTGGAGGCCAAGCTGGACACGGAGGACACGGCGGAGTTCGCGGCGACGGAGGAGCGG
TACGAGCGAGCCGTGTCCGAGGAGCCAGACAACTCGCTGCTGCTGTCCAACTTTGCCCAG
TTCCTGTACACGGTGCAGCGCGACCACGATCGGGCGGAGCACTACTTCAAGCGGGCGGTG
CGCGCGGAGCCGGCGGACGCGGAGGCGATGGGTCGGTACGCGACTTTCCTGTGGAAAGCG
CGCAATGACCTCGCGGCCGCGGAGGAGACGTACCAGGAGGCCATCGCCGCCGAACCCAGC
AACTCGCACCACGCGGCAGCCTACGCGCACTTCCTCTGGAACACGGGCGGCGATGACACA
TGCTACCCCCTCGACTGATGCGCGTGCATGAGCCATGCCTCCGCGATCCAACACCTCCCT
CCCCCAACAAAACTCAACACACACAAAAAGAAGCAAAGGATATTTTTTTACCACACTCCA
AGAACAAGACGCACTTCTCCACCCTGCACGTGCTTGGCCGACCACGCCGCTACACTACAC
TACACTACTACGCGCTAGTAGTACAGATTTTTTCTTCTTGTGGTTGCTCGTCTCGCGGTG
AGCCGGTGAGTAATATTGGGGTGATCCGCGGCGTACGTGCTGCTGCTTCCCGTTCTGGAA
ATCCGGCGAGCGGGGCACTTGGCCGGAAACGGCGGGAGCCGCGCTAAAGCTGGTGTGATC
GATCGAGTTCGCTGCTCGCGGCCCTACGGGTTTGCCAGTTGCGTTTGCCCGAGGGACCCG
TCCTATTGGCACGGATGCTTTGCGGCGTCATGGAGAGAGATGAGAGTTTGCTGTGTTTAC
CAGTGGAGTGAATACTGTAATACAAGTGCATAGCAGCAATCCAATTTGCAACCTGTAATT
GTGCAGACGAATAAGAGGCTCTTTTTTTCCGCACC