Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0853000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:36736127:36737198:-1 gene:Os01g0853000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0853000-01)
Sequence

ATGCTTAATCTTCACACCATTAGGATGTCCATTCCTTCGCTACACAGATCCTCCCCATAC
CGATGTGCGCTGCTAAAGAGGAAGAGATCTTGTATCCGTGCCTGCAGCTCTGAAGATGAT
GGATCCGATGCTTCGTCGTCGCTTGGCGGAGACAAACGCCAGCAGGAGGTCCTTGCGAAG
ATCGCAATGCTTCAGGCGCAGAAGGTGCGCATCACAAGCTTCTTGGACGAGCGCTCTGCT
TACCTGACCAAGTTTGCGAAGGATGCGGACACCGAGTTCGATCTGATTGGCCAGAACGCC
ATGAAAGAGCTTGATGAAGTTGGGGACCAGATAATGGAGAGGCTGGACAGCAAGATGCAG
GCCTTTGAGGAGACTGCTGAAGTTCAAAGGCAGGAGATAGAAATGAACGAGAGGGTGCTT
GAAGACTTCGAAGATTGGATTGAGAAGGAGAAAAATGAAGGTATGTTCTTCAAAAGCCTT
GGGAAGGTGAAGCCTCGCAACAAGAAGAAACTCACAGTAAAACCAATACCCAAGCTAGAA
GCACAAAAGGTCAAAGATATTGCAAAAGAAAGTGCAGGATCAAAAACTAGGATGAACATT
TACCTTGGGCTCATGGCAATACTCGGGCTTACAATTGCAAATGCCGTCTTCGCAACACCT
GAGGTGGAGTGGAGGAAGGTTGCAGCTCTGGGTCTAATATTCATTGGTTTGGTTGCTCAG
GTCATCTACGAGCAGGATATCTCATCACCAGAAGCTGAAAAGAAGGGAGGAAAAGAAGAA
TGA

Peptide Sequence

PEP ID

Os01t0853000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:36736127:36737198:-1 gene:Os01g0853000 transcript:Os01t0853000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0853000-01)
Sequence

MLNLHTIRMSIPSLHRSSPYRCALLKRKRSCIRACSSEDDGSDASSSLGGDKRQQEVLAK
IAMLQAQKVRITSFLDERSAYLTKFAKDADTEFDLIGQNAMKELDEVGDQIMERLDSKMQ
AFEETAEVQRQEIEMNERVLEDFEDWIEKEKNEGMFFKSLGKVKPRNKKKLTVKPIPKLE
AQKVKDIAKESAGSKTRMNIYLGLMAILGLTIANAVFATPEVEWRKVAALGLIFIGLVAQ
VIYEQDISSPEAEKKGGKEE

Transcript Sequence

Transcript ID

Os01t0853000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:36736127:36737198:-1 gene:Os01g0853000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0853000-01)
Sequence

ACTCAAGCTCAACTGCTCAAGCATCGAGTGGTGGGCAGAAACAAATCCTTCCACGATAGT
ACTTCGCAGAGCAAGAGCAGCAGCATAGCAAAGATTAAGAGGAGATGCTTAATCTTCACA
CCATTAGGATGTCCATTCCTTCGCTACACAGATCCTCCCCATACCGATGTGCGCTGCTAA
AGAGGAAGAGATCTTGTATCCGTGCCTGCAGCTCTGAAGATGATGGATCCGATGCTTCGT
CGTCGCTTGGCGGAGACAAACGCCAGCAGGAGGTCCTTGCGAAGATCGCAATGCTTCAGG
CGCAGAAGGTGCGCATCACAAGCTTCTTGGACGAGCGCTCTGCTTACCTGACCAAGTTTG
CGAAGGATGCGGACACCGAGTTCGATCTGATTGGCCAGAACGCCATGAAAGAGCTTGATG
AAGTTGGGGACCAGATAATGGAGAGGCTGGACAGCAAGATGCAGGCCTTTGAGGAGACTG
CTGAAGTTCAAAGGCAGGAGATAGAAATGAACGAGAGGGTGCTTGAAGACTTCGAAGATT
GGATTGAGAAGGAGAAAAATGAAGGTATGTTCTTCAAAAGCCTTGGGAAGGTGAAGCCTC
GCAACAAGAAGAAACTCACAGTAAAACCAATACCCAAGCTAGAAGCACAAAAGGTCAAAG
ATATTGCAAAAGAAAGTGCAGGATCAAAAACTAGGATGAACATTTACCTTGGGCTCATGG
CAATACTCGGGCTTACAATTGCAAATGCCGTCTTCGCAACACCTGAGGTGGAGTGGAGGA
AGGTTGCAGCTCTGGGTCTAATATTCATTGGTTTGGTTGCTCAGGTCATCTACGAGCAGG
ATATCTCATCACCAGAAGCTGAAAAGAAGGGAGGAAAAGAAGAATGAATGAAAGACTTGA
GAGATAAGCATGAAAAAGTAGCAGTAGATTTTAATCAACATTTTCACAAGAAATGTAAAG
TGTATAAAGTTCATATGAATATATAGTCTTTTGCAATCC