Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0848400-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:36445456:36449951:-1 gene:Os01g0848400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Shattering (QTL)-1 description:BEL1-type homeobox family, Seed shattering (Os01t0848400-01)
Sequence	ATGTCGTCCGCCGCTGGGGGCGGCGGGTACGGCGGCGGCCAGGGTGGAGGCGCGGAGCAC CACCACCACCACCACGGGCACGCCGGTCACCTCCTGCTCCACCACCATCCGCAGCACGTG GCCGGCGCGGCCGTTGCGGCAGCGGCCGCGGCGGCGGGCGGGCAGATGTACCACGTGCCC CAGCACAGCCGGCGCGAGAAGCTCCGGTTCCCGCCGGACGCCGGGGACTCGCCACCGCCT CATGGTCATGGTCATGGTCATGCCCCGCAGCAGCAGCAGCAGCACGGGTCGTGGCCTCCG CCCCCGGCGTTCTACTCGTACGCGTCCTCGTCGTCGTCGTACTCCCCGCACAGCCCTACT CTAGCGCAGGCGCAGCTGGTGGCGCACGGGCTGGCGCCGCCGCTCCCGCAGATCCCGACG CAGAACTTCTCGCTGTCGCTCTCCTCCGCGTCGTCGAATCCTCCACCACCGCAGGCGCAG CCGAGGAGGCAGCTCGGCGGCCTCGCGCAGGCCACGGGGCCGTTCGGTCCCTTCACCGGC TACGCCGCCGTGCTCGGCCGGTCCCGTTTCCTCGGCCCGGCAGAGAAGCTGTTCGAGGAG ATCTGCGACGTCGGCGGCGCTGCTTCGCACGTCGACCGCACCATCTCCGACGAGGGCCTG CTCGACGCGGATCCGATGGACGGCGTCGATCATGACGTCGTTGATCACGACCTCGGCGGC GCTGACCGCGCAGCGGCCGACGCTGGCCCCATCTCGGGGGCCGAGCAGCAGTGGAAGAAG ACGAAGCTCATCTCCATGATGGAAGAGGTTTGCAAGAGGTACCGGCAGTACTACCAGCAG GTTCAGGCTGTGATGGCCTCGTTCGAGACCGTCGCCGGGTTCAGCAACGCCGCGCCGTTC GCGGCATTGGCGCTGAGGGCGATGGCGAAGCACTTCAAGTGCTTGAAGAGCATGATTCTG AACCAGCTGCGCAACACGAGCAACAAGGTCGCTGTGAAGGACGGGCTAAACAAGGAGATC GCCGTGTTCGGGCTCGCCGGGGGTAGCAGCGGCGGCGCCGGCCTCCAGCGAGCGAACAGC GCGAGCGCGTTCGGCCAGCCGCACAATATTTGGCGCCCACAGAGGGGGCTCCCCGAGCGC GCTGTGTCCGTTTTACGCGCGTGGCTGTTCGAACACTTCCTGCACCCGTATCCTACCGAT GGTGATAAGCAAATGCTAGCAAAACAAACAGGCTTGACACGCAACCAGGTATCGAACTGG TTTATCAACGCAAGGGTTAGGTTGTGGAAGCCAATGGTGGAAGAAATTCACAACCTAGAG ATGAGGCAAATGCACAAGCACTCGGTGGTTGACAAGGGCCAGCATAGCGTGCATCATCAG GCCCAGCATTCTTCGCAGTGCAGCGGGAATCCCTCCGTTCCTTCGGACTCCCATCCTGGA CAGAGCAGCAGCATAACTCGGAACCACAACACCGCTGCCTCCCAGGGCTTCCCGGATGAG CTCTCCCAGATGTCCCAGTCCATCCAGGGACAGGTGAGCTTCGCATACAACGGGCTGACC TCGCAGCACAACATTGCATCACCACATCATCAGCACCAGCAGGTCGGCGGTGTTGGTATC GGAGGCGGCAATGGCGGTGTCTCCCTCACCCTTGGTCTTCACCAGAACAACAGGGTCTGC ATCGCCGAGCCTCTCCCGGCTGCTCTCCCGGCCAACCTAGCTCACCGTTTCGGACTGGAG GAAGTCAGTGACGCCTATGTGATGAGCTCATTTGGAGGTCAGGACCGGCATTTCGGGAAG GAGATTGGTGGTCACTTGCTGCATGATTTTGTCGGGTGA

Peptide Sequence

PEP ID	Os01t0848400-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:36445456:36449951:-1 gene:Os01g0848400 transcript:Os01t0848400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Shattering (QTL)-1 description:BEL1-type homeobox family, Seed shattering (Os01t0848400-01)
Sequence	MSSAAGGGGYGGGQGGGAEHHHHHHGHAGHLLLHHHPQHVAGAAVAAAAAAAGGQMYHVP QHSRREKLRFPPDAGDSPPPHGHGHGHAPQQQQQHGSWPPPPAFYSYASSSSSYSPHSPT LAQAQLVAHGLAPPLPQIPTQNFSLSLSSASSNPPPPQAQPRRQLGGLAQATGPFGPFTG YAAVLGRSRFLGPAEKLFEEICDVGGAASHVDRTISDEGLLDADPMDGVDHDVVDHDLGG ADRAAADAGPISGAEQQWKKTKLISMMEEVCKRYRQYYQQVQAVMASFETVAGFSNAAPF AALALRAMAKHFKCLKSMILNQLRNTSNKVAVKDGLNKEIAVFGLAGGSSGGAGLQRANS ASAFGQPHNIWRPQRGLPERAVSVLRAWLFEHFLHPYPTDGDKQMLAKQTGLTRNQVSNW FINARVRLWKPMVEEIHNLEMRQMHKHSVVDKGQHSVHHQAQHSSQCSGNPSVPSDSHPG QSSSITRNHNTAASQGFPDELSQMSQSIQGQVSFAYNGLTSQHNIASPHHQHQQVGGVGI GGGNGGVSLTLGLHQNNRVCIAEPLPAALPANLAHRFGLEEVSDAYVMSSFGGQDRHFGK EIGGHLLHDFVG

Transcript Sequence

Transcript ID	Os01t0848400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:36445456:36449951:-1 gene:Os01g0848400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Shattering (QTL)-1 description:BEL1-type homeobox family, Seed shattering (Os01t0848400-01)
Sequence	CGGCCTTTCTGCTTTCGCTTTCACAGTTTCACGGCTTACCATTTCCTTCCCATCTCTCCC TCCCGCCACCCCCCTCTTTCTCCCCCTCCGTGTCTCGCCTTTGCAGAAAGAAAGGCGCCA CGAACCCAGCAACAACACCCAGCACAAAGGCGAAACGGGGAAAAAGAGGAGGAAAACAAC AAGAGGACGCGAGGGGTCGGGGTGGGAGAGGGAGGCTACACTACAGCAGCAGCAGAAGCA GAGCGGGAGAGTGATGAGGGAGTGAGACCAGGCCAGCCAAGCCAGGCCCGGGCGCTCGGA AAGTGCGGAGCCGTTTCCCCTCTATCTCCACTCTCTCCAGGGCCAGGTGCTCACTGCGCT GCGCCTCTTCGCACGCACCACCCGTACTACGTGCCCACCCGCGCGCGCGCCGAGGAGAAG AGACCCACGACCGTACGTGCGTGCGCGCCATGTCGTCCGCCGCTGGGGGCGGCGGGTACG GCGGCGGCCAGGGTGGAGGCGCGGAGCACCACCACCACCACCACGGGCACGCCGGTCACC TCCTGCTCCACCACCATCCGCAGCACGTGGCCGGCGCGGCCGTTGCGGCAGCGGCCGCGG CGGCGGGCGGGCAGATGTACCACGTGCCCCAGCACAGCCGGCGCGAGAAGCTCCGGTTCC CGCCGGACGCCGGGGACTCGCCACCGCCTCATGGTCATGGTCATGGTCATGCCCCGCAGC AGCAGCAGCAGCACGGGTCGTGGCCTCCGCCCCCGGCGTTCTACTCGTACGCGTCCTCGT CGTCGTCGTACTCCCCGCACAGCCCTACTCTAGCGCAGGCGCAGCTGGTGGCGCACGGGC TGGCGCCGCCGCTCCCGCAGATCCCGACGCAGAACTTCTCGCTGTCGCTCTCCTCCGCGT CGTCGAATCCTCCACCACCGCAGGCGCAGCCGAGGAGGCAGCTCGGCGGCCTCGCGCAGG CCACGGGGCCGTTCGGTCCCTTCACCGGCTACGCCGCCGTGCTCGGCCGGTCCCGTTTCC TCGGCCCGGCAGAGAAGCTGTTCGAGGAGATCTGCGACGTCGGCGGCGCTGCTTCGCACG TCGACCGCACCATCTCCGACGAGGGCCTGCTCGACGCGGATCCGATGGACGGCGTCGATC ATGACGTCGTTGATCACGACCTCGGCGGCGCTGACCGCGCAGCGGCCGACGCTGGCCCCA TCTCGGGGGCCGAGCAGCAGTGGAAGAAGACGAAGCTCATCTCCATGATGGAAGAGGTTT GCAAGAGGTACCGGCAGTACTACCAGCAGGTTCAGGCTGTGATGGCCTCGTTCGAGACCG TCGCCGGGTTCAGCAACGCCGCGCCGTTCGCGGCATTGGCGCTGAGGGCGATGGCGAAGC ACTTCAAGTGCTTGAAGAGCATGATTCTGAACCAGCTGCGCAACACGAGCAACAAGGTCG CTGTGAAGGACGGGCTAAACAAGGAGATCGCCGTGTTCGGGCTCGCCGGGGGTAGCAGCG GCGGCGCCGGCCTCCAGCGAGCGAACAGCGCGAGCGCGTTCGGCCAGCCGCACAATATTT GGCGCCCACAGAGGGGGCTCCCCGAGCGCGCTGTGTCCGTTTTACGCGCGTGGCTGTTCG AACACTTCCTGCACCCGTATCCTACCGATGGTGATAAGCAAATGCTAGCAAAACAAACAG GCTTGACACGCAACCAGGTATCGAACTGGTTTATCAACGCAAGGGTTAGGTTGTGGAAGC CAATGGTGGAAGAAATTCACAACCTAGAGATGAGGCAAATGCACAAGCACTCGGTGGTTG ACAAGGGCCAGCATAGCGTGCATCATCAGGCCCAGCATTCTTCGCAGTGCAGCGGGAATC CCTCCGTTCCTTCGGACTCCCATCCTGGACAGAGCAGCAGCATAACTCGGAACCACAACA CCGCTGCCTCCCAGGGCTTCCCGGATGAGCTCTCCCAGATGTCCCAGTCCATCCAGGGAC AGGTGAGCTTCGCATACAACGGGCTGACCTCGCAGCACAACATTGCATCACCACATCATC AGCACCAGCAGGTCGGCGGTGTTGGTATCGGAGGCGGCAATGGCGGTGTCTCCCTCACCC TTGGTCTTCACCAGAACAACAGGGTCTGCATCGCCGAGCCTCTCCCGGCTGCTCTCCCGG CCAACCTAGCTCACCGTTTCGGACTGGAGGAAGTCAGTGACGCCTATGTGATGAGCTCAT TTGGAGGTCAGGACCGGCATTTCGGGAAGGAGATTGGTGGTCACTTGCTGCATGATTTTG TCGGGTGATTGTGGCTGCTGCCTCAGGTTGCTGGTGATGCACTTGTAATGTACTGCTAGT ATGATGTTAGGATGGTATATAAGTCAATCACTTGGCGACATGGCTTGATGATCAGTCTGA ATCAATTTGTTCGGAGGGTGAAAAAACATTGATCTTCCCTTC