Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0846500-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:36359740:36365448:1 gene:Os01g0846500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os01t0846500-01);PAP/25A core domain containing protein. (Os01t0846500-02)
Sequence

ATGTCGATTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTGTACAGAAGATATCCTC
TCTCTAATCAAACCAGTGGAGGGTGACCGAAACAAACGAATATATGCAATTCAGGAGCTG
GCAGATACAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGTAAAACCTTTTGGATCC
TTCGTATCACAACTTTATGCAAAATCAGGTGATTTGGATGTGTCAGTTGAGCTGTTCAAT
GCCTTGAATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCTGAGAGAAGTAAGGAGA
GCTTTGCAAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCCTAATGCAAGAGTTCCA
GTCCTTCAGTATGTGAGCAACCAATATGGTATTTCCTGTGATATATCCATTAGCAATTAC
CCTGGTCGAATTAAATCGAAAATCTTCTACTGGATCAATACTTTGGATGATCGCTTTGGT
GATATGGTTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACATTAATGATCCAAAAAAT
GGAACCCTGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCATTTTCAGACATGTGAA
CCTGCAATATTACCACCGCTGAAGGAGATTTATGAAGGGAACATCATGGAGGACATTTCA
GGGAGGGCGTACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGA
TTCCGGCGCCAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCA
TTCTTTCACAAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACT
GGTCGGTTGGAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTT
GTTGAAGATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTC
CAAGATATTGTCAATGCCTTCAGCAACGCGAGCAATAAGTTTGTTTCTGATGCGCATGCG
CTTACTGACCGAAATGGATTATTGTCACTGCTTTGCACACCTGATGTTGGATCAAAACTT
GGTGGAAGAGCCAGTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTT
TTATGA

Peptide Sequence

PEP ID

Os01t0846500-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:36359740:36365448:1 gene:Os01g0846500 transcript:Os01t0846500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os01t0846500-01);PAP/25A core domain containing protein. (Os01t0846500-02)
Sequence

MSIWRVPNYDVLEKCTEDILSLIKPVEGDRNKRIYAIQELADTIYSAGALRGASVKPFGS
FVSQLYAKSGDLDVSVELFNALNLPISKRKKQDTLREVRRALQKRGIARHMEFIPNARVP
VLQYVSNQYGISCDISISNYPGRIKSKIFYWINTLDDRFGDMVLLVKEWAKAQNINDPKN
GTLNSYSLCLLVLFHFQTCEPAILPPLKEIYEGNIMEDISGRAYYNEKHLDEVCSINIER
FRRQNMGQRNQSSLSHLLASFFHKFFRIDALSDKVISTYTGRLERIQDNPRWMDKSYSLF
VEDPFEKPDNAARAVGSFEFQDIVNAFSNASNKFVSDAHALTDRNGLLSLLCTPDVGSKL
GGRASASRYTNTLVSPHDRFL

Transcript Sequence

Transcript ID

Os01t0846500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:36359740:36365448:1 gene:Os01g0846500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os01t0846500-01);PAP/25A core domain containing protein. (Os01t0846500-02)
Sequence

ACTTTCGCCAATCGCCATGGTGCAAGCCGCCTCAACCTCCTCGCGCTTTCTCCGCACAAC
CCGTCTCCACGGCTCCTCCACCTCCACCACGCCAGCGGAGCCCGCAGCCTCCGCGTAGCC
GGCGGCGGCTCCTCCTCCTCTCATCGCGCTATCTCTCTCTCTCGGATTTCAGGATGTCGA
TTTGGCGTGTCCCTAATTATGATGTGTTGGAGAAGTGTACAGAAGATATCCTCTCTCTAA
TCAAACCAGTGGAGGGTGACCGAAACAAACGAATATATGCAATTCAGGAGCTGGCAGATA
CAATCTATTCAGCTGGGGCCTTGAGAGGTGCTTCTGTAAAACCTTTTGGATCCTTCGTAT
CACAACTTTATGCAAAATCAGGTGATTTGGATGTGTCAGTTGAGCTGTTCAATGCCTTGA
ATCTCCCTATAAGTAAGAGAAAGAAGCAAGATACCCTGAGAGAAGTAAGGAGAGCTTTGC
AAAAGCGAGGTATTGCTAGACATATGGAGTTCATTCCTAATGCAAGAGTTCCAGTCCTTC
AGTATGTGAGCAACCAATATGGTATTTCCTGTGATATATCCATTAGCAATTACCCTGGTC
GAATTAAATCGAAAATCTTCTACTGGATCAATACTTTGGATGATCGCTTTGGTGATATGG
TTTTATTGGTCAAGGAATGGGCCAAAGCTCAAAACATTAATGATCCAAAAAATGGAACCC
TGAATTCCTATTCACTTTGTCTACTTGTTCTCTTTCATTTTCAGACATGTGAACCTGCAA
TATTACCACCGCTGAAGGAGATTTATGAAGGGAACATCATGGAGGACATTTCAGGGAGGG
CGTACTATAATGAGAAACATCTTGATGAGGTTTGCTCCATAAATATAGAAAGATTCCGGC
GCCAAAATATGGGGCAAAGAAATCAGAGCTCTCTTTCTCATCTACTTGCATCATTCTTTC
ACAAGTTTTTCCGCATCGATGCCCTTTCGGATAAGGTTATATCGACTTACACTGGTCGGT
TGGAGAGAATCCAGGACAATCCAAGATGGATGGACAAGTCATACAGCTTGTTTGTTGAAG
ATCCATTTGAGAAACCTGATAATGCTGCTAGAGCAGTCGGTTCCTTTGAGTTCCAAGATA
TTGTCAATGCCTTCAGCAACGCGAGCAATAAGTTTGTTTCTGATGCGCATGCGCTTACTG
ACCGAAATGGATTATTGTCACTGCTTTGCACACCTGATGTTGGATCAAAACTTGGTGGAA
GAGCCAGTGCCAGCCGTTATACAAATACCTTAGTGAGTCCTCATGACAGATTTTTATGAT
ATCTTGACTATGTGGCACCTAACCCATACGATGATCATCATCACCAGCCAGCCAGAGGAG
GAAGCAGGTCAGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGCAGTGCATT
ACCAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCAAACAACAGTTCATCACC
AGAACCAGAACAATCAACAGGTGTATGCTGCAGGGAGGCAAACAGGAGGTCAGTACCAGA
ATACCCAGCGTAGCAAGGAGAACACATCATATCGTCATTCAAATTGGCGAGCAGCAACTA
CATGGCACGAGCCAGTTTGTGGATGATTCTACAATGGAGAATGGCAGTAACGCTCTCAGA
CCGGCCTCACCATCAGCATCAGTTGATCATAACTGATGGTCCTAGGATAGCAACAGATTA
TCTTTAGCTCTTGCCTGACAATATGTCAATATGCATCACATTTCGATTCCCTTAGGTCTC
GACAAACAATATGTATGAGCTCATGAAATTTAGCGCAAGTTATTGCCAGCCAGCTCGTAT
GGTTGAGCGAGCCTGGGGCTTATGTGCATTTTGAGATCTAGAAGATGTATTGCTGAACAT
GCAGCTCTATCACTTCTGATGTTCAATATATAACTTTAGGCCATCTTCCTTCTCC