Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0844400-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:36257567:36261729:-1 gene:Os01g0844400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to palmitoyltransferase PFA4. (Os01t0844400-01);Zinc finger, DHHC-type domain containing protein. (Os01t0844400-02)
Sequence

ATGGCGGGGCGGCCGGGGTACGTGACGGTGCCGATACTGTCCGTGCTCGCCGCGATCGGG
TACGTGTACTACACGGCGGTGTTCCTGGCGATCCCGGCGTGGCTGGGGCTCGCCACGGCG
GCCGGGGTGGCCAACGCGGTGGCCTTCACCGCGCTGGCCGCCGCCTGCGTCGCGACCTAC
GCCGTCGCCGTCTCCCGCGACCCGGGCCGCGTGCCGCCGGCCTTCTTGCCCGACGTCGAG
GACGCCGAGAGCCCCATCCACGAGATCAAGCGCAAGGGTGGCGATTTGAGATATTGTCAG
AAATGTTCCCATTATAAGCCTCCCCGTGCTCATCATTGTCGTGTCTGCAAGAGATGTGTT
CTAAGAATGGACCATCACTGTATATGGATTAACAATTGTGTTGGACATGAAAACTACAAG
ATTTTCCTAGTCTTTGTGCTGTATGCTGTAGTAGCAAGCTTATATTCACTGGTTCTGGTT
ATAGGAGGTGCTGTGCACAGTTTGCCTAAGAATGAACAATTAGGCAGTGATTCTTCTAGA
ACATCAATTATCATTTGCGGGGTATTTTTGTGTCCACTAGCTTTGGCATTGTCCATTCTT
TTGGGTTGGCATGTGTATCTCATCTTTCATAATAAAACTACTATTGAGTACCATGAAGGA
GTTAGGGCAATGTGGTTGGCAGAAAAGGCTGGAAATCTATACCACCATCCCTATGACCTT
GGTGTCTATGAGAATCTTGTTTCAGTGCTAGGGCCTAATGCGTTGTGCTGGCTCTGCCCA
ATATCAAGGAATACAGGCAATGGTATTCGTTTCCGTACATCATATGATATACCACTATCT
ACACCACCAATTTGA

Peptide Sequence

PEP ID

Os01t0844400-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:36257567:36261729:-1 gene:Os01g0844400 transcript:Os01t0844400-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to palmitoyltransferase PFA4. (Os01t0844400-01);Zinc finger, DHHC-type domain containing protein. (Os01t0844400-02)
Sequence

MAGRPGYVTVPILSVLAAIGYVYYTAVFLAIPAWLGLATAAGVANAVAFTALAAACVATY
AVAVSRDPGRVPPAFLPDVEDAESPIHEIKRKGGDLRYCQKCSHYKPPRAHHCRVCKRCV
LRMDHHCIWINNCVGHENYKIFLVFVLYAVVASLYSLVLVIGGAVHSLPKNEQLGSDSSR
TSIIICGVFLCPLALALSILLGWHVYLIFHNKTTIEYHEGVRAMWLAEKAGNLYHHPYDL
GVYENLVSVLGPNALCWLCPISRNTGNGIRFRTSYDIPLSTPPI

Transcript Sequence

Transcript ID

Os01t0844400-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:36257567:36261729:-1 gene:Os01g0844400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to palmitoyltransferase PFA4. (Os01t0844400-01);Zinc finger, DHHC-type domain containing protein. (Os01t0844400-02)
Sequence

GCCGCAATCACACGCACACCCTTTACCCGCCGGAACGCGCGCACTTGCCTTGCCCCCCCG
CCAAACGCCAGCGACAACAGCTATAGCAGCAGCCGCGAGCCGCGAGGCCTTCTCCTCCCG
GGACGCCGCGCGAATGCCCTCCCCTCGCTGCCGGGGGGAAGAGGAGCGGTAGCAGCAGGC
GAGGGCGCCGCGGCGGCGGCGGGGATGGCGGGGCGGCCGGGGTACGTGACGGTGCCGATA
CTGTCCGTGCTCGCCGCGATCGGGTACGTGTACTACACGGCGGTGTTCCTGGCGATCCCG
GCGTGGCTGGGGCTCGCCACGGCGGCCGGGGTGGCCAACGCGGTGGCCTTCACCGCGCTG
GCCGCCGCCTGCGTCGCGACCTACGCCGTCGCCGTCTCCCGCGACCCGGGCCGCGTGCCG
CCGGCCTTCTTGCCCGACGTCGAGGACGCCGAGAGCCCCATCCACGAGATCAAGCGCAAG
GGTGGCGATTTGAGATATTGTCAGAAATGTTCCCATTATAAGCCTCCCCGTGCTCATCAT
TGTCGTGTCTGCAAGAGATGTGTTCTAAGAATGGACCATCACTGTATATGGATTAACAAT
TGTGTTGGACATGAAAACTACAAGATTTTCCTAGTCTTTGTGCTGTATGCTGTAGTAGCA
AGCTTATATTCACTGGTTCTGGTTATAGGAGGTGCTGTGCACAGTTTGCCTAAGAATGAA
CAATTAGGCAGTGATTCTTCTAGAACATCAATTATCATTTGCGGGGTATTTTTGTGTCCA
CTAGCTTTGGCATTGTCCATTCTTTTGGGTTGGCATGTGTATCTCATCTTTCATAATAAA
ACTACTATTGAGTACCATGAAGGAGTTAGGGCAATGTGGTTGGCAGAAAAGGCTGGAAAT
CTATACCACCATCCCTATGACCTTGGTGTCTATGAGAATCTTGTTTCAGTGCTAGGGCCT
AATGCGTTGTGCTGGCTCTGCCCAATATCAAGGAATACAGGCAATGGTATTCGTTTCCGT
ACATCATATGATATACCACTATCTACACCACCAATTTGACATCAGGTAGCATTACATTCA
TGTTAGATTTCTGGTAATTTGCTAAAAAAACTTGGTTGCCTATCCAAGTGTGAAATGTGC
TATTCTCGCAATAGCATTTGATAACCCTTCATAAAGGAATAGCGTTTGTCAATGTCTTGA
AACTCTTGCATCAAGAGTTTGTACTTGATGTGATCAAATGTGTAAATGACACTCCACGTG
TAAGATACAGGAAGAGGAGCTGGATATTCCTCCAGGCTCCAAGGATCTATATGGATTTTG
GAGCTAGAAATGTTAACTTGGTTTTCTTTTTGCTTTGCAATTTTCGACATACTTGATGAG
AAGAGTCGCCAGCGCCTCTACTGATCTAGAGTGGTTGTATTCATACACAGAAGTCCAAAT
ACATGAGTGCCTCTTGTAAAGTTC