Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0842600-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:36182463:36187878:-1 gene:Os01g0842600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FTSH3 description:Similar to AAA-metalloprotease FtsH. (Os01t0842600-01)
Sequence	ATGAGCCTCTCCTCCCTCTCCCGCGCCCTCGCCCGGTCCGCGCGCTCCTCCCGGCAGCGC CAGGGTTCTCTGCTCGGGGGGCATGGCGGGCTCCGTGCTTCGTCGCCGCCGCTGCCCTGC GGCGAGTTGGGTTTTCTGCGCAGCTATGTGACGTCAGTTATCGGGAATCGGGCAGCGGTG GCCTCCGGGGCAGGGAAGGGTGGGGACTGGAGGTTCCTGCTTGCTAGCCGGCAGTTCCGG CGGCTATTCTCCGACAAGTCGAAGAAAAACCACGGGAAGCATTCGGAGGAGGAGAATAAA GGTAAAGGGGATGAGAGTGACAAGTCCGACTCAAAGAAGCAATCCAGTTCAGGTGATCAA TGGAATTTCGAGGAGAGCATTAAACAATTCAAGGACATGATTGCTCCTTTATTCCTTTTT GGCCTATTATTGTTATCTGCATCAGCATCTTCATCAGAGCAGGAGATAAGCTTCCAAGAA TTCAAGAATAAGTTGTTGGAACCTGGTTTAGTTGACCACATTGTTGTTTCAAACAAGTCA ATTGCTAAGGTTTACGTCAGGAGTTCACCTTCAATTGATCGAATTCAGGATAGTGATATC CATATAACTACAAGTCATCTTCCTGGGATAGAGTCTCCTAGCAGCTACAAGTATTACTTC AATATTGGAAGTGTTGACTCCTTTGAAGAGAAGTTACAAGAGGCCCAGAAAGCATTGGAG ATAGATCCACACTATTATGTCCCAATCACTTACACTACTGAAGCAAAATGGTTTGAGGAA GTAATGAAGTATGTCCCAACCGTTCTAATTATTGGATTAATATATTTGCTTGGGAAAAGG ATACAAAATGGATTTACTGTTGGGGGTGGTCCTGGGAAAGGAGGCCGTAGCATTTTCAGT ATTGGAAAAGTTCAAGTGACAAAATTGGATAAAAACTCCAAAAATAAGGTGTTCTTTAAG GATGTAGCTGGCTGTGATGAAGCCAAACAAGAAATTATGGAATTTGTTCATTTCCTGAAA AATCCCAAGAAATATGAAGAACTGGGAGCAAAAATACCAAAGGGTGCTCTTCTTGTTGGT CCCCCAGGCACAGGAAAGACTCTCCTTGCTAAAGCTACTGCAGGAGAGTCTGGTGTGCCC TTCTTGTCTATTTCTGGTTCAGACTTCATGGAAATGTTTGTTGGTGTTGGACCATCCAGG GTGCGGAACTTATTTCAAGAAGCTCGGCAGTGTTCACCTAGTATTGTATTCATTGATGAA ATTGATGCAATCGGCCGTGCTAGAGGCCGTGGAGGTTTTTCTGGTGGACATGATGAGCGT GAAAGCACATTGAACCAGTTACTTGTAGAGATGGATGGGTTTGGAACTACATCTGGTGTT GTTGTTCTTGCTGGTACCAATAGGCCTGACATCCTGGATAAGGCTTTGCTAAGACCAGGA AGATTTGATCGTCAGATAAGTATTGATAAACCAGACATAAAGGGTCGTGATCAAATATTT CGCATCTACCTTAAAAAGCTGAAACTGGACAAGGAACCATCATTTTATTCACAAAGATTA GCTGCTTTGACACCTGGATTTGCTGGAGCTGACATTGCCAATGTTTGTAATGAGGCAGCT TTAATTGCTGCAAGAAGTGAGGGCACACTCATTACAATGCAACATTTTGAATCTGCAATT GATAGGGTTATCGGAGGCTTGGAAAAGAAAAACAAGGTGATTAGCAAGTTGGAGCGGCGA ACTGTTGCTTACCATGAATCTGGTCATGCTGTTGCTGGATGGTTTTTGGAGCATGCCGAG CCACTACTGAAGGTCACAATTGTTCCTCGTGGAACAGCTGCTTTAGGTTTTGCTCAGTAT GTGCCAAATGACAATCTTTTGATGACTAAAGAGCAGCTTTTTGACATGACCTGCATGACA CTAGGTGGCCGAGCTGCTGAGGAGGTCTTGATTGGAAAGATCTCGACTGGTGCACAGAAT GATCTGGAGAAAGTTACTAAGATGACTTATGCCCAGGTTGCAGTATATGGCTTCAGCGAA AAGGTTGGCCTTCTTTCTTTCCCTCAAAGGGAGGATGGTTTTGAGATGAGCAAACCATAT AGCAGCCAGACGGCATCCATCATTGACACTGAGGTGAGGGAATGGGTCGCTAAGGCCTAT GAAAAAACTGTTGAGCTTATAAAACAACATAAAGATCAAGTTGCACAAATCGCCGAGCTG CTGCTTGAGAAAGAGGTTCTCCACCAGGATGATCTTGTCCAGGTTCTAGGGGAACGCCCA TTCAAGACACTCGAGCCAACTAATTATGATCGATTCAAACAAGGTTTTCAAGATGAAGAC AGCAATAGGAATGCTGAATTGTCAAATGCAGATGGAGCATCATCCCTTGGAGAGGCTGTG GCATCATAA

Peptide Sequence

PEP ID	Os01t0842600-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:36182463:36187878:-1 gene:Os01g0842600 transcript:Os01t0842600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FTSH3 description:Similar to AAA-metalloprotease FtsH. (Os01t0842600-01)
Sequence	MSLSSLSRALARSARSSRQRQGSLLGGHGGLRASSPPLPCGELGFLRSYVTSVIGNRAAV ASGAGKGGDWRFLLASRQFRRLFSDKSKKNHGKHSEEENKGKGDESDKSDSKKQSSSGDQ WNFEESIKQFKDMIAPLFLFGLLLLSASASSSEQEISFQEFKNKLLEPGLVDHIVVSNKS IAKVYVRSSPSIDRIQDSDIHITTSHLPGIESPSSYKYYFNIGSVDSFEEKLQEAQKALE IDPHYYVPITYTTEAKWFEEVMKYVPTVLIIGLIYLLGKRIQNGFTVGGGPGKGGRSIFS IGKVQVTKLDKNSKNKVFFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVG PPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCSPSIVFIDE IDAIGRARGRGGFSGGHDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPG RFDRQISIDKPDIKGRDQIFRIYLKKLKLDKEPSFYSQRLAALTPGFAGADIANVCNEAA LIAARSEGTLITMQHFESAIDRVIGGLEKKNKVISKLERRTVAYHESGHAVAGWFLEHAE PLLKVTIVPRGTAALGFAQYVPNDNLLMTKEQLFDMTCMTLGGRAAEEVLIGKISTGAQN DLEKVTKMTYAQVAVYGFSEKVGLLSFPQREDGFEMSKPYSSQTASIIDTEVREWVAKAY EKTVELIKQHKDQVAQIAELLLEKEVLHQDDLVQVLGERPFKTLEPTNYDRFKQGFQDED SNRNAELSNADGASSLGEAVAS

Transcript Sequence

Transcript ID	Os01t0842600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:36182463:36187878:-1 gene:Os01g0842600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FTSH3 description:Similar to AAA-metalloprotease FtsH. (Os01t0842600-01)
Sequence	GGGATCAAAACCCTAATACGGCCCGCCCCCGCCTCGATCTCCGTCCAATGCGCTCGCCGC CGCCGCCGCCATGAGCCTCTCCTCCCTCTCCCGCGCCCTCGCCCGGTCCGCGCGCTCCTC CCGGCAGCGCCAGGGTTCTCTGCTCGGGGGGCATGGCGGGCTCCGTGCTTCGTCGCCGCC GCTGCCCTGCGGCGAGTTGGGTTTTCTGCGCAGCTATGTGACGTCAGTTATCGGGAATCG GGCAGCGGTGGCCTCCGGGGCAGGGAAGGGTGGGGACTGGAGGTTCCTGCTTGCTAGCCG GCAGTTCCGGCGGCTATTCTCCGACAAGTCGAAGAAAAACCACGGGAAGCATTCGGAGGA GGAGAATAAAGGTAAAGGGGATGAGAGTGACAAGTCCGACTCAAAGAAGCAATCCAGTTC AGGTGATCAATGGAATTTCGAGGAGAGCATTAAACAATTCAAGGACATGATTGCTCCTTT ATTCCTTTTTGGCCTATTATTGTTATCTGCATCAGCATCTTCATCAGAGCAGGAGATAAG CTTCCAAGAATTCAAGAATAAGTTGTTGGAACCTGGTTTAGTTGACCACATTGTTGTTTC AAACAAGTCAATTGCTAAGGTTTACGTCAGGAGTTCACCTTCAATTGATCGAATTCAGGA TAGTGATATCCATATAACTACAAGTCATCTTCCTGGGATAGAGTCTCCTAGCAGCTACAA GTATTACTTCAATATTGGAAGTGTTGACTCCTTTGAAGAGAAGTTACAAGAGGCCCAGAA AGCATTGGAGATAGATCCACACTATTATGTCCCAATCACTTACACTACTGAAGCAAAATG GTTTGAGGAAGTAATGAAGTATGTCCCAACCGTTCTAATTATTGGATTAATATATTTGCT TGGGAAAAGGATACAAAATGGATTTACTGTTGGGGGTGGTCCTGGGAAAGGAGGCCGTAG CATTTTCAGTATTGGAAAAGTTCAAGTGACAAAATTGGATAAAAACTCCAAAAATAAGGT GTTCTTTAAGGATGTAGCTGGCTGTGATGAAGCCAAACAAGAAATTATGGAATTTGTTCA TTTCCTGAAAAATCCCAAGAAATATGAAGAACTGGGAGCAAAAATACCAAAGGGTGCTCT TCTTGTTGGTCCCCCAGGCACAGGAAAGACTCTCCTTGCTAAAGCTACTGCAGGAGAGTC TGGTGTGCCCTTCTTGTCTATTTCTGGTTCAGACTTCATGGAAATGTTTGTTGGTGTTGG ACCATCCAGGGTGCGGAACTTATTTCAAGAAGCTCGGCAGTGTTCACCTAGTATTGTATT CATTGATGAAATTGATGCAATCGGCCGTGCTAGAGGCCGTGGAGGTTTTTCTGGTGGACA TGATGAGCGTGAAAGCACATTGAACCAGTTACTTGTAGAGATGGATGGGTTTGGAACTAC ATCTGGTGTTGTTGTTCTTGCTGGTACCAATAGGCCTGACATCCTGGATAAGGCTTTGCT AAGACCAGGAAGATTTGATCGTCAGATAAGTATTGATAAACCAGACATAAAGGGTCGTGA TCAAATATTTCGCATCTACCTTAAAAAGCTGAAACTGGACAAGGAACCATCATTTTATTC ACAAAGATTAGCTGCTTTGACACCTGGATTTGCTGGAGCTGACATTGCCAATGTTTGTAA TGAGGCAGCTTTAATTGCTGCAAGAAGTGAGGGCACACTCATTACAATGCAACATTTTGA ATCTGCAATTGATAGGGTTATCGGAGGCTTGGAAAAGAAAAACAAGGTGATTAGCAAGTT GGAGCGGCGAACTGTTGCTTACCATGAATCTGGTCATGCTGTTGCTGGATGGTTTTTGGA GCATGCCGAGCCACTACTGAAGGTCACAATTGTTCCTCGTGGAACAGCTGCTTTAGGTTT TGCTCAGTATGTGCCAAATGACAATCTTTTGATGACTAAAGAGCAGCTTTTTGACATGAC CTGCATGACACTAGGTGGCCGAGCTGCTGAGGAGGTCTTGATTGGAAAGATCTCGACTGG TGCACAGAATGATCTGGAGAAAGTTACTAAGATGACTTATGCCCAGGTTGCAGTATATGG CTTCAGCGAAAAGGTTGGCCTTCTTTCTTTCCCTCAAAGGGAGGATGGTTTTGAGATGAG CAAACCATATAGCAGCCAGACGGCATCCATCATTGACACTGAGGTGAGGGAATGGGTCGC TAAGGCCTATGAAAAAACTGTTGAGCTTATAAAACAACATAAAGATCAAGTTGCACAAAT CGCCGAGCTGCTGCTTGAGAAAGAGGTTCTCCACCAGGATGATCTTGTCCAGGTTCTAGG GGAACGCCCATTCAAGACACTCGAGCCAACTAATTATGATCGATTCAAACAAGGTTTTCA AGATGAAGACAGCAATAGGAATGCTGAATTGTCAAATGCAGATGGAGCATCATCCCTTGG AGAGGCTGTGGCATCATAACTTGGACAGAATTGTAGGTGTATATCGCATGTTTGCTGAAC AGATTATTAATATTTCTGAGGCATGAGAAGCTGTATAAAGGTGTTCATATGCCAAGTTAT GGCTATTTTGCTAGATTGCGATTTCCACTTCGCGCAGGCGTTCAATCTGTTGAATCTGCC GATAACTAGTGGTTCAGTTCATGAATTTTCAGAAATTTACTTGACGATTTGATCTCTGTT CCTGTAAGGCTGTAACCTAGCACTAGGGCATGAGAAGTTGTATAAAGGTGTTCGTGGTTT TTCTG