Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0842400-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:36165932:36168939:-1 gene:Os01g0842400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LACCASE 4 description:Similar to Laccase (EC 1.10.3.2). (Os01t0842400-01);Similar to cDNA clone:J013170B10, full insert sequence. (Os01t0842400-02)
Sequence	ATGACCATGGCTATCTCCTCTGCTCTTCCTAGCCCTCTACTCTTGGCGGCTTCCCTACTG CTTCTCATCGTCCAAGCTCAGGGCATCACTAGGCACTACGAATTCAATGTGCAAATGGCG AACGCGACGAGGCTGTGCAACACCAAGAGCATGGTGACGGTGAACGGGCAGTGCCCCGGG CCGGAGCTGGTGGCGAGGGAAGGCGACCGCGTCGTCATCCGCGTCACCAACAACGTCGCG CACAACATCTCGTTGCACTGGCACGGCGTCCGGCAGGTGCGGACCGGGTGGGCGGACGGG CCGGCGTACATCACGCAGTGCCCGATCCAGACGGGGCAGAGCTACGTGTACAACTTCACG GTGGCCGGGCAGCGCGGCACCCTGTGGTGGCACGCCCACATCTCCTGGCTCCGCGCCACC GTCTACGGCGCCCTCGTCATCCTCCCCAAGCTCGGCGTCCCCTACCCCTTCCCCGCCCCG CACAAGGAGGTCCCCGTCATCTTCGGCGAGTGGTGGAACGCGGACACGGAGGAGGTGGTC AACCAGGCGGTCCAGACCGGCGGAGGCCCGAACGTCTCCGACGCCTTCACCATCAACGGC CTCCCCGGCCCTCTCTACAACTGCTCTGCCCAAGACACGTTCAAGCTGAAGGTGAAACCC GGGAAAACGTACATGCTGCGCCTCATCAACGCCGCGCTCAACGAGGAGCTCTTCTTCGCC GTCGCCAACCACACGCTCACCGTCGTCGAGGTCGACGCCGTCTACGTCAAGCCGTTCACC GTCGACACCCTGGTGATCTCGCCGGGGCAGACCACCAACGTGCTCCTCACCGCCAAGCCG TACTACCCCGGCGCCAACTTCTACATGTCCGCCGCGCCCTACTCCACCGCCAGGCCTGGG ACCTTCGGCAACACGACCGTCGCCGGCATCCTCGAGTACGAGAACCCCGCCATGTCGCCC TCCGCGGCGAGCTTCGTCAAGGGCTTGCCGCTGTTCAAGCCGACGCTGCCGCAGCTCAAC GACACCGACTTCGTCACCAACTTCACCGACAAGCTCCGTAGCCTCGCGACGCCGGAGTAC CCGGCGGCCGTGCCGCAGTCGGTTGACAAGCGATTCTTCTTCACGGTCGGGCTGGGCACG CTGCCGTGCCCGGCGAACATGACCTGCCAGGGCCCCAACAACACGCAGATGGCGGCGTCC ATGAACAACGTCTCCTTCGTGCTCCCGGCGAGGGCGCTGCTGCAGTCCCACTTCACCGGA CTCTCCAGCGGCGTGTACGCGCCGGACTTCCCCGTCGCGCCGCTGTCGCCGTTCAACTAC ACGGGGACGCCGCCGAACAACACCAACGTGAAGACCGGGACCAAGCTGCTGGTGCTGCGG TACAACACGTCGGTGGAGCTGGTGATGCAGGACACCAGCATCCTGGGCATCGAGAGCCAC CCGCTGCACCTGCACGGCTTCAACTTCTTCGTGATCGGCCAAGGGTTCGGCAACTACGAC GCCGTGAACGACCCGGCCAAGTTCAACCTCGTCGACCCCGTCGAGCGCAACACCGTCGGC GTGCCGGCCGGCGGATGGGTGGCCATCCGTTTCCTCGCTGACAACCCAGGTGTATGGTTC ATGCACTGTCATTTGGAGGCGCACACGACGTGGGGCCTGAGGATGGCATGGCTAGTGTTG GATGGGAGCCATCCGAACCAGAAGCTGCTTCCTCCGCCGTCCGATCTGCCCAAATGCTAG

Peptide Sequence

PEP ID	Os01t0842400-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:36165932:36168939:-1 gene:Os01g0842400 transcript:Os01t0842400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LACCASE 4 description:Similar to Laccase (EC 1.10.3.2). (Os01t0842400-01);Similar to cDNA clone:J013170B10, full insert sequence. (Os01t0842400-02)
Sequence	MTMAISSALPSPLLLAASLLLLIVQAQGITRHYEFNVQMANATRLCNTKSMVTVNGQCPG PELVAREGDRVVIRVTNNVAHNISLHWHGVRQVRTGWADGPAYITQCPIQTGQSYVYNFT VAGQRGTLWWHAHISWLRATVYGALVILPKLGVPYPFPAPHKEVPVIFGEWWNADTEEVV NQAVQTGGGPNVSDAFTINGLPGPLYNCSAQDTFKLKVKPGKTYMLRLINAALNEELFFA VANHTLTVVEVDAVYVKPFTVDTLVISPGQTTNVLLTAKPYYPGANFYMSAAPYSTARPG TFGNTTVAGILEYENPAMSPSAASFVKGLPLFKPTLPQLNDTDFVTNFTDKLRSLATPEY PAAVPQSVDKRFFFTVGLGTLPCPANMTCQGPNNTQMAASMNNVSFVLPARALLQSHFTG LSSGVYAPDFPVAPLSPFNYTGTPPNNTNVKTGTKLLVLRYNTSVELVMQDTSILGIESH PLHLHGFNFFVIGQGFGNYDAVNDPAKFNLVDPVERNTVGVPAGGWVAIRFLADNPGVWF MHCHLEAHTTWGLRMAWLVLDGSHPNQKLLPPPSDLPKC

Transcript Sequence

Transcript ID	Os01t0842400-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:36165932:36168939:-1 gene:Os01g0842400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LACCASE 4 description:Similar to Laccase (EC 1.10.3.2). (Os01t0842400-01);Similar to cDNA clone:J013170B10, full insert sequence. (Os01t0842400-02)
Sequence	AACATTCATTCCATCCTTGCCAGGCCATCTCCCACTCAAAGTCTCACAGAGCTAGCTGAT CAAGAGCCATTACAGATTGTGGCTCAAAGCTTAGGCTACACAAATTAAGATGACCATGGC TATCTCCTCTGCTCTTCCTAGCCCTCTACTCTTGGCGGCTTCCCTACTGCTTCTCATCGT CCAAGCTCAGGGCATCACTAGGCACTACGAATTCAATGTGCAAATGGCGAACGCGACGAG GCTGTGCAACACCAAGAGCATGGTGACGGTGAACGGGCAGTGCCCCGGGCCGGAGCTGGT GGCGAGGGAAGGCGACCGCGTCGTCATCCGCGTCACCAACAACGTCGCGCACAACATCTC GTTGCACTGGCACGGCGTCCGGCAGGTGCGGACCGGGTGGGCGGACGGGCCGGCGTACAT CACGCAGTGCCCGATCCAGACGGGGCAGAGCTACGTGTACAACTTCACGGTGGCCGGGCA GCGCGGCACCCTGTGGTGGCACGCCCACATCTCCTGGCTCCGCGCCACCGTCTACGGCGC CCTCGTCATCCTCCCCAAGCTCGGCGTCCCCTACCCCTTCCCCGCCCCGCACAAGGAGGT CCCCGTCATCTTCGGCGAGTGGTGGAACGCGGACACGGAGGAGGTGGTCAACCAGGCGGT CCAGACCGGCGGAGGCCCGAACGTCTCCGACGCCTTCACCATCAACGGCCTCCCCGGCCC TCTCTACAACTGCTCTGCCCAAGACACGTTCAAGCTGAAGGTGAAACCCGGGAAAACGTA CATGCTGCGCCTCATCAACGCCGCGCTCAACGAGGAGCTCTTCTTCGCCGTCGCCAACCA CACGCTCACCGTCGTCGAGGTCGACGCCGTCTACGTCAAGCCGTTCACCGTCGACACCCT GGTGATCTCGCCGGGGCAGACCACCAACGTGCTCCTCACCGCCAAGCCGTACTACCCCGG CGCCAACTTCTACATGTCCGCCGCGCCCTACTCCACCGCCAGGCCTGGGACCTTCGGCAA CACGACCGTCGCCGGCATCCTCGAGTACGAGAACCCCGCCATGTCGCCCTCCGCGGCGAG CTTCGTCAAGGGCTTGCCGCTGTTCAAGCCGACGCTGCCGCAGCTCAACGACACCGACTT CGTCACCAACTTCACCGACAAGCTCCGTAGCCTCGCGACGCCGGAGTACCCGGCGGCCGT GCCGCAGTCGGTTGACAAGCGATTCTTCTTCACGGTCGGGCTGGGCACGCTGCCGTGCCC GGCGAACATGACCTGCCAGGGCCCCAACAACACGCAGATGGCGGCGTCCATGAACAACGT CTCCTTCGTGCTCCCGGCGAGGGCGCTGCTGCAGTCCCACTTCACCGGACTCTCCAGCGG CGTGTACGCGCCGGACTTCCCCGTCGCGCCGCTGTCGCCGTTCAACTACACGGGGACGCC GCCGAACAACACCAACGTGAAGACCGGGACCAAGCTGCTGGTGCTGCGGTACAACACGTC GGTGGAGCTGGTGATGCAGGACACCAGCATCCTGGGCATCGAGAGCCACCCGCTGCACCT GCACGGCTTCAACTTCTTCGTGATCGGCCAAGGGTTCGGCAACTACGACGCCGTGAACGA CCCGGCCAAGTTCAACCTCGTCGACCCCGTCGAGCGCAACACCGTCGGCGTGCCGGCCGG CGGATGGGTGGCCATCCGTTTCCTCGCTGACAACCCAGGTGTATGGTTCATGCACTGTCA TTTGGAGGCGCACACGACGTGGGGCCTGAGGATGGCATGGCTAGTGTTGGATGGGAGCCA TCCGAACCAGAAGCTGCTTCCTCCGCCGTCCGATCTGCCCAAATGCTAGTCGGGACCTTA CCACAGATGCCGTTGATTCTTCTTTCCTCATTTCATTTGTTCGCCAATTTGCGATTGCTT TCTCCTGAAGGAGATTTTAGTGTGTTAGCCCGTTCTTAGCTAACTTTTGTGACATTATTT TGTTCTTTTTTCTTTTATTTGTGTACAACTATACAATGACACTGTTTTGATGCTTCTTTG AATAAAAAAATGGGCATTAATTGC