Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0842200-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:36158308:36161507:1 gene:Os01g0842200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Scarecrow-like 9 (Fragment). (Os01t0842200-01);Similar to SCARECROW-like protein. (Os01t0842200-02)
Sequence	ATGGTCATGGATGCTGGGGTGCACGACGTGTGCACGATGCTGCCCGGATCCAAGCGCGAC GCGCACCTGCCGCTGCCAATCTACCCCCAAATCGCCGCCGCCAATGGGTTCGCGACGGCG GAGGAGTTCGACCCGCTGCTGTTCCTTTCGCCCGATGCGGTTTGCGGCGGCGGCGGCGGC GACTACCTGAATATTGTCTCCGCGCAGCCCATCTCGGCGGCCTCCACCAACGGCGCGTCG CCGCCGAGAGATGTCTCGGTCTCTGCTTCGGCGGCGTCGTCGGCGGCGGCGCAGCATGAC GACTCCGAGGCTTTCTCGGATATCGTCCTGGGGTACATCAACCGCATGCTCATGGCCGAG GACATCGACGAGAAGTTCGAGCACTACCCGGTGAACGCCGATGATCTGCTCGCCGCCGAG AAGCCGTTCCTCGAGATCCTCGCCGACCAGTCGCCGTACTCGGGCGGCAGCTCGGTCGAG AGTCCCGACGGCAGCAGCGCCGCCAACTCCTGTAACAGCCTCAGTCCCTGCAACTGTAGC TCGTCCTCCGACGGGCTTGGCGCCGTGCCGCAGACGCCGGTCCTCGAGTTCCCCACGGCC GCCTTCTCGCAGACGCCCCAGCTGTACGGGGATCTGATCCCCACGGGGGGCATGGTGGAA TCGGGCGGCGCCTGGCCGTACGACCCGACGGAATTCTATCAGCTCCAGACCAAGCCGGTT CGTGAGAACCTCCCGTCGCAATCTTCGTCGTTCGCGTCTTCGAACGGCAGCAGTGTTACT TTCTCAGAAGGATTCGAGTCGTTGCTGAGCCCGGCTGGTGTCTTGCCTGATGTTAGCCTG AATGATTTTGTTGTGCAGAACCAACAGGCTTTGCAGTTCCGCCGCGGGTTTCAAGAGGCA AGCAAGTTTCTTCCTGATGAGAGCAAGCTTGTGATTGATGTGGATAAGCTCTACAGTGGA GATGAGGGGAGTAGGTTCCTTGGTGAGGTTAGACAAGAGAAGAAGCTTGTGAAGGTGAAG ACAGAAACCTCTGATGTTGAATCAGCAGGTCACCGAGGAAAGAAGCATTTCTATGGTGAT GACCTGGATGCGGAGGAAGGGAGGTGCAGCAAGCATTCCGCGCAAGGGATTGACACTGAC CACCTTGTGAGGGATTTGATGGACAAGGTCTTGCTATGCAATGGTGAGACATGCTCAAAA GGTGTTAAGGAGTTGCGTGAGGCTCTGCAGCATGATGTGGCGAAACATTCAGGCGGAGGC CATGGCAAAGGGTCCAGCCATGGCAAGGGTCGTGGAAAGAAACAACCCAAGAAGGAGGTG GTTGACCTGGAGACCCTTCTCATCCATTGTGCTCAGTCTGTGGCCACTGATGACAGGCGC AGTGCAACTGAGCTCCTGAAGCAGATCAGGCAGCATGCTCATGCCAATGGTGATGGTGAT CAGCGTTTGGCACACTGCTTCGCCAACGGCCTCGAGGCGAGGCTGGCAGGTACTGGTAGT CAAATTTACAAGAACTACACGATAACTCGGCTTCCATGCACTGATGTGCTGAAAGCGTAC CAGCTTTATTTGGCAGCTTGCCCATTTAAGAAGATCTCTCATTACTTTGCCAATCAAACA ATTTTGAATGCTGTGGAGAAGGCCAAGAAAGTTCACATTGTCGATTATGGCATATACTAT GGATTTCAGTGGCCGTGTCTTATTCAGCGGCTATCTAACAGGCCTGGAGGCCCACCAAAG CTTAGGATCACTGGAATTGACACACCTCAGCCTGGTTTCCGCCCAGCAGAACGCACAGAG GAGACGGGGAGATATCTAAGTGATTATGCTCAGACCTTCAATGTTCCTTTTGAATTCCAA GCTATTGCGTCTCGATTTGAGGCTGTCCGGATGGAGGATCTCCACATTGAGGAGGATGAG GTTCTGATTGTCAACTGCATGTTCAAATTCAAGAATTTGATGGATGAGAGTGTGGTGGCT GAGAGTCCAAGGAACATGGCATTGAAGACAATTAGGAAGATGAACCCACATGTGTTCATT CATGGGGTGGTGAATGGATCTTACAATGCACCATTTTTTGTGACACGCTTCCGGGAGGCC TTGTTCCACTATTCTGCTATCTTCGACATGTTGGAGACTAACATTCCCAAGGATAATGAG CAGAGGTTGCTCATTGAGTCTGCTCTATTTAGCCGGGAGGCAATCAATGTGATCTCTTGT GAGGGACTGGAGAGGATGGAGAGGCCAGAGACATACAAGCAATGGCAGGTACGGAACCAG AGGGTTGGGTTCAAGCAGTTGCCATTGAACCAGGATATGATGAAGCGTGCGCGGGAGAAG GTCAGGTGCTACCACAAGGACTTCATCATCGATGAGGACAACAGGTGGTTACTACAAGGA TGGAAAGGGCGCATTTTGTTCGCACTGTCGACATGGAAGCCAGATAATCGATCATCTTCA TAG

Peptide Sequence

PEP ID	Os01t0842200-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:36158308:36161507:1 gene:Os01g0842200 transcript:Os01t0842200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Scarecrow-like 9 (Fragment). (Os01t0842200-01);Similar to SCARECROW-like protein. (Os01t0842200-02)
Sequence	MVMDAGVHDVCTMLPGSKRDAHLPLPIYPQIAAANGFATAEEFDPLLFLSPDAVCGGGGG DYLNIVSAQPISAASTNGASPPRDVSVSASAASSAAAQHDDSEAFSDIVLGYINRMLMAE DIDEKFEHYPVNADDLLAAEKPFLEILADQSPYSGGSSVESPDGSSAANSCNSLSPCNCS SSSDGLGAVPQTPVLEFPTAAFSQTPQLYGDLIPTGGMVESGGAWPYDPTEFYQLQTKPV RENLPSQSSSFASSNGSSVTFSEGFESLLSPAGVLPDVSLNDFVVQNQQALQFRRGFQEA SKFLPDESKLVIDVDKLYSGDEGSRFLGEVRQEKKLVKVKTETSDVESAGHRGKKHFYGD DLDAEEGRCSKHSAQGIDTDHLVRDLMDKVLLCNGETCSKGVKELREALQHDVAKHSGGG HGKGSSHGKGRGKKQPKKEVVDLETLLIHCAQSVATDDRRSATELLKQIRQHAHANGDGD QRLAHCFANGLEARLAGTGSQIYKNYTITRLPCTDVLKAYQLYLAACPFKKISHYFANQT ILNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPQPGFRPAERTE ETGRYLSDYAQTFNVPFEFQAIASRFEAVRMEDLHIEEDEVLIVNCMFKFKNLMDESVVA ESPRNMALKTIRKMNPHVFIHGVVNGSYNAPFFVTRFREALFHYSAIFDMLETNIPKDNE QRLLIESALFSREAINVISCEGLERMERPETYKQWQVRNQRVGFKQLPLNQDMMKRAREK VRCYHKDFIIDEDNRWLLQGWKGRILFALSTWKPDNRSSS

Transcript Sequence

Transcript ID	Os01t0842200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:36158308:36161507:1 gene:Os01g0842200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Scarecrow-like 9 (Fragment). (Os01t0842200-01);Similar to SCARECROW-like protein. (Os01t0842200-02)
Sequence	AACCTGCGCCTCTCGAAAACACTGGTCCGCCTCCGTTCCCCTCTCCTCTCGGCTCTCTTA TCTCACCCTTCGTTTCGCTCGTCTCCCTCCCGCCGCAGCAGGTGGGGGGATTCGAGTGTT GGGAGGTTTGCATGCTCTGTGGTGGCGGTAGAGTTGGTGGTGGTGGTGGATACAGATGGT CATGGATGCTGGGGTGCACGACGTGTGCACGATGCTGCCCGGATCCAAGCGCGACGCGCA CCTGCCGCTGCCAATCTACCCCCAAATCGCCGCCGCCAATGGGTTCGCGACGGCGGAGGA GTTCGACCCGCTGCTGTTCCTTTCGCCCGATGCGGTTTGCGGCGGCGGCGGCGGCGACTA CCTGAATATTGTCTCCGCGCAGCCCATCTCGGCGGCCTCCACCAACGGCGCGTCGCCGCC GAGAGATGTCTCGGTCTCTGCTTCGGCGGCGTCGTCGGCGGCGGCGCAGCATGACGACTC CGAGGCTTTCTCGGATATCGTCCTGGGGTACATCAACCGCATGCTCATGGCCGAGGACAT CGACGAGAAGTTCGAGCACTACCCGGTGAACGCCGATGATCTGCTCGCCGCCGAGAAGCC GTTCCTCGAGATCCTCGCCGACCAGTCGCCGTACTCGGGCGGCAGCTCGGTCGAGAGTCC CGACGGCAGCAGCGCCGCCAACTCCTGTAACAGCCTCAGTCCCTGCAACTGTAGCTCGTC CTCCGACGGGCTTGGCGCCGTGCCGCAGACGCCGGTCCTCGAGTTCCCCACGGCCGCCTT CTCGCAGACGCCCCAGCTGTACGGGGATCTGATCCCCACGGGGGGCATGGTGGAATCGGG CGGCGCCTGGCCGTACGACCCGACGGAATTCTATCAGCTCCAGACCAAGCCGGTTCGTGA GAACCTCCCGTCGCAATCTTCGTCGTTCGCGTCTTCGAACGGCAGCAGTGTTACTTTCTC AGAAGGATTCGAGTCGTTGCTGAGCCCGGCTGGTGTCTTGCCTGATGTTAGCCTGAATGA TTTTGTTGTGCAGAACCAACAGGCTTTGCAGTTCCGCCGCGGGTTTCAAGAGGCAAGCAA GTTTCTTCCTGATGAGAGCAAGCTTGTGATTGATGTGGATAAGCTCTACAGTGGAGATGA GGGGAGTAGGTTCCTTGGTGAGGTTAGACAAGAGAAGAAGCTTGTGAAGGTGAAGACAGA AACCTCTGATGTTGAATCAGCAGGTCACCGAGGAAAGAAGCATTTCTATGGTGATGACCT GGATGCGGAGGAAGGGAGGTGCAGCAAGCATTCCGCGCAAGGGATTGACACTGACCACCT TGTGAGGGATTTGATGGACAAGGTCTTGCTATGCAATGGTGAGACATGCTCAAAAGGTGT TAAGGAGTTGCGTGAGGCTCTGCAGCATGATGTGGCGAAACATTCAGGCGGAGGCCATGG CAAAGGGTCCAGCCATGGCAAGGGTCGTGGAAAGAAACAACCCAAGAAGGAGGTGGTTGA CCTGGAGACCCTTCTCATCCATTGTGCTCAGTCTGTGGCCACTGATGACAGGCGCAGTGC AACTGAGCTCCTGAAGCAGATCAGGCAGCATGCTCATGCCAATGGTGATGGTGATCAGCG TTTGGCACACTGCTTCGCCAACGGCCTCGAGGCGAGGCTGGCAGGTACTGGTAGTCAAAT TTACAAGAACTACACGATAACTCGGCTTCCATGCACTGATGTGCTGAAAGCGTACCAGCT TTATTTGGCAGCTTGCCCATTTAAGAAGATCTCTCATTACTTTGCCAATCAAACAATTTT GAATGCTGTGGAGAAGGCCAAGAAAGTTCACATTGTCGATTATGGCATATACTATGGATT TCAGTGGCCGTGTCTTATTCAGCGGCTATCTAACAGGCCTGGAGGCCCACCAAAGCTTAG GATCACTGGAATTGACACACCTCAGCCTGGTTTCCGCCCAGCAGAACGCACAGAGGAGAC GGGGAGATATCTAAGTGATTATGCTCAGACCTTCAATGTTCCTTTTGAATTCCAAGCTAT TGCGTCTCGATTTGAGGCTGTCCGGATGGAGGATCTCCACATTGAGGAGGATGAGGTTCT GATTGTCAACTGCATGTTCAAATTCAAGAATTTGATGGATGAGAGTGTGGTGGCTGAGAG TCCAAGGAACATGGCATTGAAGACAATTAGGAAGATGAACCCACATGTGTTCATTCATGG GGTGGTGAATGGATCTTACAATGCACCATTTTTTGTGACACGCTTCCGGGAGGCCTTGTT CCACTATTCTGCTATCTTCGACATGTTGGAGACTAACATTCCCAAGGATAATGAGCAGAG GTTGCTCATTGAGTCTGCTCTATTTAGCCGGGAGGCAATCAATGTGATCTCTTGTGAGGG ACTGGAGAGGATGGAGAGGCCAGAGACATACAAGCAATGGCAGGTACGGAACCAGAGGGT TGGGTTCAAGCAGTTGCCATTGAACCAGGATATGATGAAGCGTGCGCGGGAGAAGGTCAG GTGCTACCACAAGGACTTCATCATCGATGAGGACAACAGGTGGTTACTACAAGGATGGAA AGGGCGCATTTTGTTCGCACTGTCGACATGGAAGCCAGATAATCGATCATCTTCATAGCT TGTTCAGCTCTAATTATTGCATGATATTGTAAATGTAGACCTGTTCATATTTTTTTGGGG GGCATTTGGACCGATTGTTCCTGGTAGGCAATATATTGCTAGGTATGTTATTTGAACAAC CAAGTAATGGGAAACTTCTGCTTAGGAATTGTCTTATATGATGATCTGGTTCATCTCTGT CCGTACATAAGATGAACCCGCCTGTTCCTAGAATCTCTGCACATTTGTTGTGATCATTAT TGTTGCTTCCGACGGGAACAGTTGGTTCAATTTTGGTGGAGCTGCTAGATATGTTGAAGT TGTAGACCTTGGGTTGTCTTATGTATGGATGAGCCTTGTACAGTATTTCTTCCAAACATT CAGTACTTGTCACTAAGTTCTGGTTCTGGATAATC