Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0841100-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:36102687:36104273:-1 gene:Os01g0841100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12 description:FAS1 domain domain containing protein. (Os01t0841100-01)
Sequence	ATGCGGGGCGGAGCGGGAGCCCTTCCGGTGCCAGGCGGCCTCGCGCTCGGGGTGGTGCTG CTTCTAGTTCTCGCCGTGCTGCCGTCCCGGGCGGCCGGGGTGAACGTGACGGCCGCGCTC GCGGCTTTCCCCAGCTTCGCCGACTTCGCGCGGCTTCTGGAGTCGAGCCCGGTGGCCGGG GAGCTGGCGGCGCGGTCGTCGCTGACGCTGCTGGCCGTGCCGAACAACAACCTGCCGCGC TCGCCCTCGGCGTTCGCGGCGGCCTCCGGCGCCGACATCGCCGATGTGCTGCGGTACCAC GTCCTGCTTGAGTACCTCTCCCCTTCTGACCTCGCGCGCCTCCCCGCCTCCGGGAAGCTC GTGACGACGCTGTTCCAGACCACCGGGCGCGCGCCCTCCGATCTCGGCGCCGTCAACCTC ACCGTCGGGGGAAACTCCACCGTCGTGGTCCGGTCGCCGGCGCCTTTCCCGGGGTCGAGC GCCACTGTCCTCGGCGCCGTCACCGCTGTGCCTTACAACCTCAGCGTGCTCGCGGTGGGT GGCCTCATCGTCCCCTCCGGGCTCGACGTCGCGGCCTCCGACAGCCGCCCGGCCGGTGGC GTCAACATCACCCACGTCCTCGCGGACGCGCGGGGGTTCAACGTTGCTGCCTCCATGCTG GAGGCATCGGGCGTCGCGGACGAGTTCACGGCAGACGAGCGCGGCGCCGGCATCACCGTC TTCGTGCCCACCGACGACGCCTTCGCCGACCTCCCCGCCACCGACCGCCTCCAGTCCCTC CCCGCAGATCGCAAGGCCACCGTGCTTCGCTTCCACGTGCTGCACTCGTACTATCCGCTC GGCTCCCTCGAGTCCATCGTGAACCCCGTGCAGCCCACGCTCGCCACCGAGCGCTTCGAG GCCGGCCAGTTCACGCTAAACATCACACGCGTCAATGGCTCCGTCGCCATCGACACCGGC ATCGTGCAGGCTTCGATCACCCGCACGGTGTTCGACCAAAATCCCGTTGCGGTGTTTGCC GTCTCGAAGGTTCTACTGCCCAAGGAAATGTTCGGTCGGGGCGGTGCTGATAGCGACGTC ATGGCGCCGCCGCCGGACGCGATGGCGCCAGATGCTGCCGAGAACGTGCGGACGCCGCCG ACGAGACTGTCGTCACCTCCAGCACTGCGGGGTGGCGCTGATAGTGAGTCGTCATCAGCA TTGTCAACGGCAAGGGCTGTCAATTGGTGGTGTATACGGTTGGTGCTCCTAAATCTGCAT CTCTTACTACTACCTCTGGTATGA

Peptide Sequence

PEP ID	Os01t0841100-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:36102687:36104273:-1 gene:Os01g0841100 transcript:Os01t0841100-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12 description:FAS1 domain domain containing protein. (Os01t0841100-01)
Sequence	MRGGAGALPVPGGLALGVVLLLVLAVLPSRAAGVNVTAALAAFPSFADFARLLESSPVAG ELAARSSLTLLAVPNNNLPRSPSAFAAASGADIADVLRYHVLLEYLSPSDLARLPASGKL VTTLFQTTGRAPSDLGAVNLTVGGNSTVVVRSPAPFPGSSATVLGAVTAVPYNLSVLAVG GLIVPSGLDVAASDSRPAGGVNITHVLADARGFNVAASMLEASGVADEFTADERGAGITV FVPTDDAFADLPATDRLQSLPADRKATVLRFHVLHSYYPLGSLESIVNPVQPTLATERFE AGQFTLNITRVNGSVAIDTGIVQASITRTVFDQNPVAVFAVSKVLLPKEMFGRGGADSDV MAPPPDAMAPDAAENVRTPPTRLSSPPALRGGADSESSSALSTARAVNWWCIRLVLLNLH LLLLPLV

Transcript Sequence

Transcript ID	Os01t0841100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:36102687:36104273:-1 gene:Os01g0841100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 12 description:FAS1 domain domain containing protein. (Os01t0841100-01)
Sequence	CCTCTTCTCCTCGCTTACTCCTCAGTCCCCCACCCACCACCCCAGTTGCTCCCCCCGCTG GCGAGATGCGGGGCGGAGCGGGAGCCCTTCCGGTGCCAGGCGGCCTCGCGCTCGGGGTGG TGCTGCTTCTAGTTCTCGCCGTGCTGCCGTCCCGGGCGGCCGGGGTGAACGTGACGGCCG CGCTCGCGGCTTTCCCCAGCTTCGCCGACTTCGCGCGGCTTCTGGAGTCGAGCCCGGTGG CCGGGGAGCTGGCGGCGCGGTCGTCGCTGACGCTGCTGGCCGTGCCGAACAACAACCTGC CGCGCTCGCCCTCGGCGTTCGCGGCGGCCTCCGGCGCCGACATCGCCGATGTGCTGCGGT ACCACGTCCTGCTTGAGTACCTCTCCCCTTCTGACCTCGCGCGCCTCCCCGCCTCCGGGA AGCTCGTGACGACGCTGTTCCAGACCACCGGGCGCGCGCCCTCCGATCTCGGCGCCGTCA ACCTCACCGTCGGGGGAAACTCCACCGTCGTGGTCCGGTCGCCGGCGCCTTTCCCGGGGT CGAGCGCCACTGTCCTCGGCGCCGTCACCGCTGTGCCTTACAACCTCAGCGTGCTCGCGG TGGGTGGCCTCATCGTCCCCTCCGGGCTCGACGTCGCGGCCTCCGACAGCCGCCCGGCCG GTGGCGTCAACATCACCCACGTCCTCGCGGACGCGCGGGGGTTCAACGTTGCTGCCTCCA TGCTGGAGGCATCGGGCGTCGCGGACGAGTTCACGGCAGACGAGCGCGGCGCCGGCATCA CCGTCTTCGTGCCCACCGACGACGCCTTCGCCGACCTCCCCGCCACCGACCGCCTCCAGT CCCTCCCCGCAGATCGCAAGGCCACCGTGCTTCGCTTCCACGTGCTGCACTCGTACTATC CGCTCGGCTCCCTCGAGTCCATCGTGAACCCCGTGCAGCCCACGCTCGCCACCGAGCGCT TCGAGGCCGGCCAGTTCACGCTAAACATCACACGCGTCAATGGCTCCGTCGCCATCGACA CCGGCATCGTGCAGGCTTCGATCACCCGCACGGTGTTCGACCAAAATCCCGTTGCGGTGT TTGCCGTCTCGAAGGTTCTACTGCCCAAGGAAATGTTCGGTCGGGGCGGTGCTGATAGCG ACGTCATGGCGCCGCCGCCGGACGCGATGGCGCCAGATGCTGCCGAGAACGTGCGGACGC CGCCGACGAGACTGTCGTCACCTCCAGCACTGCGGGGTGGCGCTGATAGTGAGTCGTCAT CAGCATTGTCAACGGCAAGGGCTGTCAATTGGTGGTGTATACGGTTGGTGCTCCTAAATC TGCATCTCTTACTACTACCTCTGGTATGAGATCCGGATGTTACCCATTGCTCGCTTCATT TTGCTCAATTTTTGTTCTTCTGTTACTATTTTCCCCATTTTAGAATGTGTACTACGGGAA TGTGATGGGTAGAGAATTTTATAGGGGCAAAAGCAGTAGCAATTTGTCTAGTTTCTTTAT TAGTTTTAACGAAATAATATCATGTGTAGAGAGACCTATGAAACCTACTTGTTCCAAAAC GAACAGCAGCATGTTCATAGTTGTTCT