Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0838900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:35984258:35987592:-1 gene:Os01g0838900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Trp repressor/replication initiator domain containing protein. (Os01t0838900-01)
Sequence

ATGGCACCACTGAGGGGAGCCAAGCGGCGGAAGCGGCAGCCGGAGAAGGCGTTGCCGGCG
GCGGGGCAGGCGATGCCGGCGCCGGCGCCCGGCGGGGATTGGTGGGACGGCTTCGCCCGC
AGGCTTGCAGCAGGACAATTTTCCAAAGACTGCCAAAACTTTGAGTCCGTCTTCAAGATG
TCGAGGAAGACCTTTGACTACCTTTGCTCTCTGATTAGTGGGGACTTCACAAGAAAGACA
CAAAGTTTCAGAAATTTCAGGTTTGGAGACAAGGCAATTCTAGGCGTGGAAGATCAAGTA
GGTGTTGCTCTGTTAAGATTGACCACCGGTGAGTCGCTTTTGAGCATAGGGAACCGCTTC
GGGATGAACCACTCAGCTATCTCAAACATCACTTGGAAGTTTATTGAGGCCTTGGAGGAG
CGCGCTGCCAATCATCTTAAGTGGCCTACTCCTGAGGAGATGGCAACCGTCAAATCTAAG
TTTGAAAAGATTCAGGGCCTCCCCAACTGCTGCGGCGCCATAGACACAACGCACATCCTC
ATGTGCTCTTCAGCTCAGCCTAACAGCAATGTCTGGCTCGACGGCGAGAACAGGAACAGC
ATGGTCCTGCAGGCCATCGTCGATGCCGACATGCGGTTCAGAGACGTTGTCAGTGGCTGG
CCTGGCAGCTTGAATGACTCGTGCATCCTGCGCACCTCAGGATTCTACAGGCTCTGCGAG
AAAGGCGCGAGGCTGGACGGACAAACGGAGCTTCCAGGAGAGCCAGCTGGGTCAGTGGTC
AGAGACTACATTCTTGGGGATGCAAGCTACCCTCTCCTTCCCTGGCTGATGACTCCATAC
CGTGAGAAGGATCTATCTCCGGCGAAAGCCGACTTCAACAAGCGGCACGCCGCGACGATC
ATGGTGGTGCAGGGTGCTCTGGCCAAGCTGAAGGAGAGGTGGCAGGTTCTCAAGGGAGAG
CTGTGGAGGCCGGACAAGCACCGGCTGCCGAGGATCATCTACGTCTGCTGCCTGCTCACC
AACATCATGATCGACCTCGAGGACGCGGCGAGGGGCGGCATGCCGCCGTCGCACAACCAC
GACGACGGCTACCGGCAGCAGTTCAGCGATGTCGCCGACGTCGGCGCGGCCGCGCTGAGG
GACCAGCTGTGCCAGTATGTGAGCAGGATTGGCAGCAGTTTGCCGGCGTGA

Peptide Sequence

PEP ID

Os01t0838900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:35984258:35987592:-1 gene:Os01g0838900 transcript:Os01t0838900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Trp repressor/replication initiator domain containing protein. (Os01t0838900-01)
Sequence

MAPLRGAKRRKRQPEKALPAAGQAMPAPAPGGDWWDGFARRLAAGQFSKDCQNFESVFKM
SRKTFDYLCSLISGDFTRKTQSFRNFRFGDKAILGVEDQVGVALLRLTTGESLLSIGNRF
GMNHSAISNITWKFIEALEERAANHLKWPTPEEMATVKSKFEKIQGLPNCCGAIDTTHIL
MCSSAQPNSNVWLDGENRNSMVLQAIVDADMRFRDVVSGWPGSLNDSCILRTSGFYRLCE
KGARLDGQTELPGEPAGSVVRDYILGDASYPLLPWLMTPYREKDLSPAKADFNKRHAATI
MVVQGALAKLKERWQVLKGELWRPDKHRLPRIIYVCCLLTNIMIDLEDAARGGMPPSHNH
DDGYRQQFSDVADVGAAALRDQLCQYVSRIGSSLPA

Transcript Sequence

Transcript ID

Os01t0838900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:35984258:35987592:-1 gene:Os01g0838900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Trp repressor/replication initiator domain containing protein. (Os01t0838900-01)
Sequence

CTTTGGTTGGTTTGCTCGTTTTTTTTTTCTTTTCTTGATCTCTTCTCCTCCTTCCGGGGT
TCGCGTTCGCGTCGCTCTCGTCTCGTCTCGTCATGGCACCACTGAGGGGAGCCAAGCGGC
GGAAGCGGCAGCCGGAGAAGGCGTTGCCGGCGGCGGGGCAGGCGATGCCGGCGCCGGCGC
CCGGCGGGGATTGGTGGGACGGCTTCGCCCGCAGGCTTGCAGCAGGACAATTTTCCAAAG
ACTGCCAAAACTTTGAGTCCGTCTTCAAGATGTCGAGGAAGACCTTTGACTACCTTTGCT
CTCTGATTAGTGGGGACTTCACAAGAAAGACACAAAGTTTCAGAAATTTCAGGTTTGGAG
ACAAGGCAATTCTAGGCGTGGAAGATCAAGTAGGTGTTGCTCTGTTAAGATTGACCACCG
GTGAGTCGCTTTTGAGCATAGGGAACCGCTTCGGGATGAACCACTCAGCTATCTCAAACA
TCACTTGGAAGTTTATTGAGGCCTTGGAGGAGCGCGCTGCCAATCATCTTAAGTGGCCTA
CTCCTGAGGAGATGGCAACCGTCAAATCTAAGTTTGAAAAGATTCAGGGCCTCCCCAACT
GCTGCGGCGCCATAGACACAACGCACATCCTCATGTGCTCTTCAGCTCAGCCTAACAGCA
ATGTCTGGCTCGACGGCGAGAACAGGAACAGCATGGTCCTGCAGGCCATCGTCGATGCCG
ACATGCGGTTCAGAGACGTTGTCAGTGGCTGGCCTGGCAGCTTGAATGACTCGTGCATCC
TGCGCACCTCAGGATTCTACAGGCTCTGCGAGAAAGGCGCGAGGCTGGACGGACAAACGG
AGCTTCCAGGAGAGCCAGCTGGGTCAGTGGTCAGAGACTACATTCTTGGGGATGCAAGCT
ACCCTCTCCTTCCCTGGCTGATGACTCCATACCGTGAGAAGGATCTATCTCCGGCGAAAG
CCGACTTCAACAAGCGGCACGCCGCGACGATCATGGTGGTGCAGGGTGCTCTGGCCAAGC
TGAAGGAGAGGTGGCAGGTTCTCAAGGGAGAGCTGTGGAGGCCGGACAAGCACCGGCTGC
CGAGGATCATCTACGTCTGCTGCCTGCTCACCAACATCATGATCGACCTCGAGGACGCGG
CGAGGGGCGGCATGCCGCCGTCGCACAACCACGACGACGGCTACCGGCAGCAGTTCAGCG
ATGTCGCCGACGTCGGCGCGGCCGCGCTGAGGGACCAGCTGTGCCAGTATGTGAGCAGGA
TTGGCAGCAGTTTGCCGGCGTGATTCTGGTCGCTTTGCTTGATTACTTTTGTCTCTTTTT
GTTTACCTTGACATGAGATGAAACATACCAACAGGTGATAGAATTGTAATGCGAATTTTG
GTTACTTTCGATGATTGGTCGGTTTTGATAGC