Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0838600-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:35965949:35966946:-1 gene:Os01g0838600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-like domain containing protein. (Os01t0838600-00)
Sequence

ATGAGCAAGAGGAGCAGGAGCATGTGGGACATGCAGGAGTTCGTCGGCAGCGTGGACACG
GCCCGCGTGCTGATGCTCCTCGCGCAGCAGAGCCAGCACGGCCTGCTGGGCGGCGGCGGC
TTCGCCGCCGGCGCGCAGCCGGTGGTGGTGCGCGGCGGCGCGCACGACCGCGTGTTCGAG
TGCAAGACGTGCAACCGGCAGTTCCCGACGTTCCAGGCGCTCGGGGGCCACCGCGCCAGC
CACAAGCGGCCGAGGCAGCAGCAGCAGCACGCGCTCGGCGGCGGCGCCGGCGCCGACGAC
GCGGGGCTATGCCTCGGGAGGCAGCCGACGCCGCCGCGGCCGCAGCCGGCGAAGCCGAGG
GTGCACGAGTGCCCCGTCTGCGGGCTCGAGTTCCCCATCGGGCAGGCGCTCGGCGGGCAC
ATGCGTCGGCACCGCGCGGAGGCCGAGGCGGCGGCGACAACGACGACGACGACGACGAAG
AACGGCGACGTAGGCAAGGCGGCGGCCGTGAAGGCCTGCGACGGCGGCGGTGTCTGCCTG
GACTTGAACCTGACGCCGTCGGAGAACCGCGCAAAGTGCCGGAACGTGGTGGGTCTCGGC
GCCGGCGGGCAGGGCGTACACAAGGCGCTCGCCATGTTGGATTGTTTCCTTTGA

Peptide Sequence

PEP ID

Os01t0838600-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:35965949:35966946:-1 gene:Os01g0838600 transcript:Os01t0838600-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-like domain containing protein. (Os01t0838600-00)
Sequence

MSKRSRSMWDMQEFVGSVDTARVLMLLAQQSQHGLLGGGGFAAGAQPVVVRGGAHDRVFE
CKTCNRQFPTFQALGGHRASHKRPRQQQQHALGGGAGADDAGLCLGRQPTPPRPQPAKPR
VHECPVCGLEFPIGQALGGHMRRHRAEAEAAATTTTTTTKNGDVGKAAAVKACDGGGVCL
DLNLTPSENRAKCRNVVGLGAGGQGVHKALAMLDCFL

Transcript Sequence

Transcript ID

Os01t0838600-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:35965949:35966946:-1 gene:Os01g0838600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C2H2-like domain containing protein. (Os01t0838600-00)
Sequence

AGTATTGTTGCACAGTGCAGCGGATATACAGATTTCGATCGGCGACGTTAGTGATCAGCT
GGGTTAATTAATTACGTGGCTAATTAAGCTAGCTATAGCCATGAGCAAGAGGAGCAGGAG
CATGTGGGACATGCAGGAGTTCGTCGGCAGCGTGGACACGGCCCGCGTGCTGATGCTCCT
CGCGCAGCAGAGCCAGCACGGCCTGCTGGGCGGCGGCGGCTTCGCCGCCGGCGCGCAGCC
GGTGGTGGTGCGCGGCGGCGCGCACGACCGCGTGTTCGAGTGCAAGACGTGCAACCGGCA
GTTCCCGACGTTCCAGGCGCTCGGGGGCCACCGCGCCAGCCACAAGCGGCCGAGGCAGCA
GCAGCAGCACGCGCTCGGCGGCGGCGCCGGCGCCGACGACGCGGGGCTATGCCTCGGGAG
GCAGCCGACGCCGCCGCGGCCGCAGCCGGCGAAGCCGAGGGTGCACGAGTGCCCCGTCTG
CGGGCTCGAGTTCCCCATCGGGCAGGCGCTCGGCGGGCACATGCGTCGGCACCGCGCGGA
GGCCGAGGCGGCGGCGACAACGACGACGACGACGACGAAGAACGGCGACGTAGGCAAGGC
GGCGGCCGTGAAGGCCTGCGACGGCGGCGGTGTCTGCCTGGACTTGAACCTGACGCCGTC
GGAGAACCGCGCAAAGTGCCGGAACGTGGTGGGTCTCGGCGCCGGCGGGCAGGGCGTACA
CAAGGCGCTCGCCATGTTGGATTGTTTCCTTTGAGCCGTTCAAACTGCACATATTATTGC
ATGATAGCTGTTGCCGATTATTCCTTTGTTTCTTGATAAAATATACACCGCTGATTTTTC
CTTTTGATCTTTACCTTTCTTTATTTACTTTTTAACATTTCGTAGAATTGATGTAATTTT
GGGGGGTTTTATAATATGCCAGGGTAGTTGAGAATGAACTCAGAGATGAACTCTTGTATT
TTTGTTGTAAATAACAATAAATTCATGAAAGTTAGTGG