Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0837000-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:35885095:35888562:-1 gene:Os01g0837000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NPR1-like gene 4 description:Ankyrin repeat containing protein. (Os01t0837000-01)
Sequence

ATGTCGCTCGAAATCCATGAAGAGGAGGGAGGAGGTACGGCGGCGGCGGCGGCGGTGAAG
GTGATGACGGTGTCGGGGAGCGGGAAGCGGGGGCGGTACGTGCGGCAGGTGACGGGGCGG
CACAACGACACCGACCTGCACGTGGCGGCCCGCGGAGGGGACGCCGGGGCGCTGCGCCGC
GCGCTGGACGAGGCGGCGGCGGCCGTGGCCACCGGGGAGGGGAGGGAGGCGCTGGAGGAG
GTGCGGCGGGCCGTGGCGGCGGAGCCCAACGAGGCCGGGGAGACGCCGCTCGTCGCCGCG
GCGGAGAGGGGGCACCTGGAGGTGGTAAGGGAGCTGCTCAGGCACCTCGACGCCGAGGGG
GTCGCCGCGAAGAACAGGTCGGGGTACGACGCGCTGCACGTCGCGGCGAGAGAAGGCCGT
CATGCTGTTGTGCAGGAAATGTTACTTCACAATAGGTTGCTTGCCAAGACCTTTGGGCCT
GCGAATACTAGTCCACTTATTTCAGCAGCTACGAGGGGTCACACCGAAGTTGTCAAATTG
TTACTAGAACTAGATGATTTTGGATTGGTGGAAATGGCTAAAGATAATGGGAAAAATTCC
TTGCATTTTGCTGCTCGACAAGGGCACGTTGAAATTGTTAAAGCATTACTCGAGAAAGAT
CCTCAGCTAGCAAGAAGAAATGACAAGAAAGGTCAAACAGCCTTGCATATGGCTGTAAAA
GGAACAAACTGTGATGTGCTTAGAGCACTTGTCGACGCTGATCCAGCAATTGTAATGCTG
CCAGACAAAAATGGAAACACCGCCTTGCATGTAGCAACAAGGAAAAAGCGAGCAGAGATA
GTTGCTGTTCTCTTGCGATTACCAGATACCCATGTCAATGCACTAACCAGAGACCACAAG
ACTGCGTATGATATAGCTGAAGCCTTGCCACTCTGTGAGGAGTCTTCTGAAATAAAGGAT
ATTTTATCTCAGCATGGCGCACTCAGATCTAGGGAGCTGAATCAGCCTCGAGATGAGCTC
CGAAAAACAGTGACAGAGATCAAGAAAGATGTCCACACACAGCTGGAACAGACAAGAAAA
ACGAACAAAAATGTGCATGGGATTGCTAAGGAACTCAGAAAGTTGCACAGAGAAGGCATC
AATAATGCAACGAACTCTGTAACTGTTGTTGCAGTACTTTTTGCCACGGTAGCCTTTGCA
GCCATATTCACTGTGCCTGGTGGAAATGCCAACAATGGAGTTGCGGTTGTTGTTCAGGCA
GCCTCCTTTAGAATTTTCTTCATCTTCAATGCTATAGCTCTGTTTACATCATTGGCGGTG
GTCGTAGTTCAGATAACGGTTGTCAGGGGAGAAACTAAGTCTGAGAGGAAGGTTGTTGAG
GTGATCAACAAGCTTATGTGGCTGGCATCAGTTTGCACTACCATTTCTTTCATTGCCTCT
TGCTATATTGTGCTAGGCCGCCATTTCCAATGGGCAGCACTACTAGTTAGTTTGATAGGT
GGCATCACAATGGCTGGTGTTCTGGGTACAATGACATACTATGTGGTGAAATCAAAGCGC
ATGAGGAAGATAAGAAAAAAAGAGAAGATGTCAAGAAGAAGTGGATCTAGCTCCTGGTAT
GATAATACTGAGCTCTCAGAGACTGAGCTTAACCAAGTGTATGCCTTGTAA

Peptide Sequence

PEP ID

Os01t0837000-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:35885095:35888562:-1 gene:Os01g0837000 transcript:Os01t0837000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NPR1-like gene 4 description:Ankyrin repeat containing protein. (Os01t0837000-01)
Sequence

MSLEIHEEEGGGTAAAAAVKVMTVSGSGKRGRYVRQVTGRHNDTDLHVAARGGDAGALRR
ALDEAAAAVATGEGREALEEVRRAVAAEPNEAGETPLVAAAERGHLEVVRELLRHLDAEG
VAAKNRSGYDALHVAAREGRHAVVQEMLLHNRLLAKTFGPANTSPLISAATRGHTEVVKL
LLELDDFGLVEMAKDNGKNSLHFAARQGHVEIVKALLEKDPQLARRNDKKGQTALHMAVK
GTNCDVLRALVDADPAIVMLPDKNGNTALHVATRKKRAEIVAVLLRLPDTHVNALTRDHK
TAYDIAEALPLCEESSEIKDILSQHGALRSRELNQPRDELRKTVTEIKKDVHTQLEQTRK
TNKNVHGIAKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGNANNGVAVVVQA
ASFRIFFIFNAIALFTSLAVVVVQITVVRGETKSERKVVEVINKLMWLASVCTTISFIAS
CYIVLGRHFQWAALLVSLIGGITMAGVLGTMTYYVVKSKRMRKIRKKEKMSRRSGSSSWY
DNTELSETELNQVYAL

Transcript Sequence

Transcript ID

Os01t0837000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:35885095:35888562:-1 gene:Os01g0837000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:NPR1-like gene 4 description:Ankyrin repeat containing protein. (Os01t0837000-01)
Sequence

AAGGGAGTCGTTACCGTCTCGCCATTGTCCTCCTCCTCCTCCGCCCCCACCTCTCTTTCC
TCGTGCCTTCCTCTTTCGCCGCCGGCCGTGCGCCTCTTAAAGCCGCTCCCCGCCCGAAAC
CCTACCTCGGGAACCCTACCGCGCGGCTTTGACCCAGGGATAATCCCACTACTGGCTACT
GCATTCGCTTATCTCGCTCGCGATGTCGCTCGAAATCCATGAAGAGGAGGGAGGAGGTAC
GGCGGCGGCGGCGGCGGTGAAGGTGATGACGGTGTCGGGGAGCGGGAAGCGGGGGCGGTA
CGTGCGGCAGGTGACGGGGCGGCACAACGACACCGACCTGCACGTGGCGGCCCGCGGAGG
GGACGCCGGGGCGCTGCGCCGCGCGCTGGACGAGGCGGCGGCGGCCGTGGCCACCGGGGA
GGGGAGGGAGGCGCTGGAGGAGGTGCGGCGGGCCGTGGCGGCGGAGCCCAACGAGGCCGG
GGAGACGCCGCTCGTCGCCGCGGCGGAGAGGGGGCACCTGGAGGTGGTAAGGGAGCTGCT
CAGGCACCTCGACGCCGAGGGGGTCGCCGCGAAGAACAGGTCGGGGTACGACGCGCTGCA
CGTCGCGGCGAGAGAAGGCCGTCATGCTGTTGTGCAGGAAATGTTACTTCACAATAGGTT
GCTTGCCAAGACCTTTGGGCCTGCGAATACTAGTCCACTTATTTCAGCAGCTACGAGGGG
TCACACCGAAGTTGTCAAATTGTTACTAGAACTAGATGATTTTGGATTGGTGGAAATGGC
TAAAGATAATGGGAAAAATTCCTTGCATTTTGCTGCTCGACAAGGGCACGTTGAAATTGT
TAAAGCATTACTCGAGAAAGATCCTCAGCTAGCAAGAAGAAATGACAAGAAAGGTCAAAC
AGCCTTGCATATGGCTGTAAAAGGAACAAACTGTGATGTGCTTAGAGCACTTGTCGACGC
TGATCCAGCAATTGTAATGCTGCCAGACAAAAATGGAAACACCGCCTTGCATGTAGCAAC
AAGGAAAAAGCGAGCAGAGATAGTTGCTGTTCTCTTGCGATTACCAGATACCCATGTCAA
TGCACTAACCAGAGACCACAAGACTGCGTATGATATAGCTGAAGCCTTGCCACTCTGTGA
GGAGTCTTCTGAAATAAAGGATATTTTATCTCAGCATGGCGCACTCAGATCTAGGGAGCT
GAATCAGCCTCGAGATGAGCTCCGAAAAACAGTGACAGAGATCAAGAAAGATGTCCACAC
ACAGCTGGAACAGACAAGAAAAACGAACAAAAATGTGCATGGGATTGCTAAGGAACTCAG
AAAGTTGCACAGAGAAGGCATCAATAATGCAACGAACTCTGTAACTGTTGTTGCAGTACT
TTTTGCCACGGTAGCCTTTGCAGCCATATTCACTGTGCCTGGTGGAAATGCCAACAATGG
AGTTGCGGTTGTTGTTCAGGCAGCCTCCTTTAGAATTTTCTTCATCTTCAATGCTATAGC
TCTGTTTACATCATTGGCGGTGGTCGTAGTTCAGATAACGGTTGTCAGGGGAGAAACTAA
GTCTGAGAGGAAGGTTGTTGAGGTGATCAACAAGCTTATGTGGCTGGCATCAGTTTGCAC
TACCATTTCTTTCATTGCCTCTTGCTATATTGTGCTAGGCCGCCATTTCCAATGGGCAGC
ACTACTAGTTAGTTTGATAGGTGGCATCACAATGGCTGGTGTTCTGGGTACAATGACATA
CTATGTGGTGAAATCAAAGCGCATGAGGAAGATAAGAAAAAAAGAGAAGATGTCAAGAAG
AAGTGGATCTAGCTCCTGGTATGATAATACTGAGCTCTCAGAGACTGAGCTTAACCAAGT
GTATGCCTTGTAAGAGAAAAGGTCTCCTAGATTCAGTCTCTGTCTCTGGGATTGATATGT
ACATGAAAATTCCAGATATACACATTAACAGATAACATAGCTCACAGTATTTCTTGATTT
TTACAATTCCTTCCTGTATCAACCAAACCACTCAGAACTAAATGGAATACCAATTGTCC