Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0833000-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:35658744:35660945:1 gene:Os01g0833000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0833000-01)
Sequence	ATGCCGCCGACCGCCGCCGTCGCCGTCGCCGTGGCCGCGGCCACCGCGCTCCCTTCTCCC TCCTCCTCCTCCTCCCACCGCCGCCTCCCCGCCACCGCAAAATCCGTCTGGGTAAACCCC AGCCTCCCGAGCTCCCAGCCCTTCCATCGCCGGAAACCCGCCGAGCCCCAGCACCAGCGC CAGGACCACGTGCCCGACCTCCCCGCGCTCCTCGCGGCCCTCTCCGCCGCGCGCACGGCC TCCGACCTGGCCGCCGCGGTCTCCCCGCACCGCCCCGTCTCCCCGCGCCTCCTCGGCACG CTCCTCTCCCGCCTCCCCGACGCGCGCCGCGGCGTCGCGCTCCTCGACCTCCTCGCGCCA GACCTCCCCGCCTCCGCGCTCCTCATCCCGTACAACCTCCTGCTCCGCTCCGCGTGCCGC GCCGGGATGCTCCGCCTCGCCTCCGGCCTCCTCCTGGAGATGCGGGACAGAGGGGTCGCC CCCGACGCGTTCTCGTACTCCACGCTCCTCGCGGCGCTCACCCGCGCGGGCCACCTCGAC CACGCGCTCACCTTCCTGCCGCTCATGGAGGACGACGCCGTAGCGCCCGACCTCGTGCTC TTCTCCAACCTCATCCACCTCGCCCTCCGCGGGGGCGACGCGCCCAAGGCGCTCGCGCTC TTCTCCCGCCTTCGGGGCGCCGCCGGGATCAAGCCCGACCTCAAGGCCTACAACGCCGCC ATCGCCGCGTACTGCAAGTCCGACCTGCTCCGGGACGCCAACCGGCTCCTCCTCCACGAC ATGCCCTCCGACGGCGTCGCGCCCGACGCGGAGTCGTACTCCCCCATCCTCGCCGCGCTG GCGCGCCGCGGGCGGCACCTCGCGGCCGTGTCGCTCTTCACGCACATGCGCGCCGTGGCT CGCGTCAAGCCCGACCTGTCCGTGTTCAACATCGTGCTCAACGCGTACGGGCAGCTCGAC CTCGCGCGGGAGGCGGACCGGCTGTTCTGGTCCATGCGCCGTGCTGGTGTCGCCCCGAGC GTGGTCACCTACAACACCATGCTCCGCGTGTACGGCGACGCCGGGCTGTTCGGGGAGGCG GTCCACCTGTTCGGCCTCATGCGTAGCGCCGCCTCCGATGGCAGCGACCGCGGTGGCAGC GTCATCAAGCCGAACGTGGTGACGTACAACACCATGATCGCCATCTACGGCAAGTCGCTG GAGGACGAGAAAGCCGGGAGCCTGGTGCAGGACATGCAGGCCAATGGCATCCAGCCCAAT GCCATCACCTACTCAACCATCCTGTCCATATGGGTGAAGGCCGGGAAGCTCGACCGTGCC GGGAAGCTGTTCGAGAAGCTCCGGGAAGCCGGCACGGAGATCGACCCGGTGCTTTACCAG ACGATGGTCGTGGCCTACGAGCGTGCCGGGCTTGTTTCACAATCCAAGCGCCTGTTGCAT GACCTCAAAGACTCAGAGGACGTCCCCAAGGAGACAGCCATCAAAATCTTGGCGAATGCC GGCCGAGTGGAGGAGGCCGCATGGCTGTTCCGCCGTGCAGCCGACGCCGGCGACGTCAGG GACACATCGGTGTACCGAATGATGATTGACTTGTTCGCAAAGAGCCGGAGGCACCGGAGT GTGATCGAGGTGTTCGACGAAATGAGGAAGGCGGGGTCTTTGCCGGACTCGGAGACGATC GCCATCACGATGAATGCTCATGGTAAGCTGAAGGAGTTCGACAAGGCGGCGGCGCTGTAC CGGGCGATGAGGGAGGAAGGATGCGTCTTCTCAGACAGGGTGCACTTCCAGATGGTCAGC CTGCTCGGCGCCCAGAAGGACTTCGACGCGCTGGAGGCACTGCTCGGTGAGCTTAGCGAT GACCCGAGCATCGACAAGAGGGAGCTTTACCTTGTGGCTGCCGGCGTGTACGAGAGAGCA TGCAAGTTTGATGAGTCGTCACAGATTATCAGCCAGATAAGAAGCCCCAACGCCATTGGT GTCCAGAAGTTCAGATGA

Peptide Sequence

PEP ID	Os01t0833000-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:35658744:35660945:1 gene:Os01g0833000 transcript:Os01t0833000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0833000-01)
Sequence	MPPTAAVAVAVAAATALPSPSSSSSHRRLPATAKSVWVNPSLPSSQPFHRRKPAEPQHQR QDHVPDLPALLAALSAARTASDLAAAVSPHRPVSPRLLGTLLSRLPDARRGVALLDLLAP DLPASALLIPYNLLLRSACRAGMLRLASGLLLEMRDRGVAPDAFSYSTLLAALTRAGHLD HALTFLPLMEDDAVAPDLVLFSNLIHLALRGGDAPKALALFSRLRGAAGIKPDLKAYNAA IAAYCKSDLLRDANRLLLHDMPSDGVAPDAESYSPILAALARRGRHLAAVSLFTHMRAVA RVKPDLSVFNIVLNAYGQLDLAREADRLFWSMRRAGVAPSVVTYNTMLRVYGDAGLFGEA VHLFGLMRSAASDGSDRGGSVIKPNVVTYNTMIAIYGKSLEDEKAGSLVQDMQANGIQPN AITYSTILSIWVKAGKLDRAGKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRLLH DLKDSEDVPKETAIKILANAGRVEEAAWLFRRAADAGDVRDTSVYRMMIDLFAKSRRHRS VIEVFDEMRKAGSLPDSETIAITMNAHGKLKEFDKAAALYRAMREEGCVFSDRVHFQMVS LLGAQKDFDALEALLGELSDDPSIDKRELYLVAAGVYERACKFDESSQIISQIRSPNAIG VQKFR

Transcript Sequence

Transcript ID	Os01t0833000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:35658744:35660945:1 gene:Os01g0833000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0833000-01)
Sequence	ATCCATTATCCCCGTGCCCCACCACTGGCGCCGCTCACCGGTCACGACCAATGCCGCCGA CCGCCGCCGTCGCCGTCGCCGTGGCCGCGGCCACCGCGCTCCCTTCTCCCTCCTCCTCCT CCTCCCACCGCCGCCTCCCCGCCACCGCAAAATCCGTCTGGGTAAACCCCAGCCTCCCGA GCTCCCAGCCCTTCCATCGCCGGAAACCCGCCGAGCCCCAGCACCAGCGCCAGGACCACG TGCCCGACCTCCCCGCGCTCCTCGCGGCCCTCTCCGCCGCGCGCACGGCCTCCGACCTGG CCGCCGCGGTCTCCCCGCACCGCCCCGTCTCCCCGCGCCTCCTCGGCACGCTCCTCTCCC GCCTCCCCGACGCGCGCCGCGGCGTCGCGCTCCTCGACCTCCTCGCGCCAGACCTCCCCG CCTCCGCGCTCCTCATCCCGTACAACCTCCTGCTCCGCTCCGCGTGCCGCGCCGGGATGC TCCGCCTCGCCTCCGGCCTCCTCCTGGAGATGCGGGACAGAGGGGTCGCCCCCGACGCGT TCTCGTACTCCACGCTCCTCGCGGCGCTCACCCGCGCGGGCCACCTCGACCACGCGCTCA CCTTCCTGCCGCTCATGGAGGACGACGCCGTAGCGCCCGACCTCGTGCTCTTCTCCAACC TCATCCACCTCGCCCTCCGCGGGGGCGACGCGCCCAAGGCGCTCGCGCTCTTCTCCCGCC TTCGGGGCGCCGCCGGGATCAAGCCCGACCTCAAGGCCTACAACGCCGCCATCGCCGCGT ACTGCAAGTCCGACCTGCTCCGGGACGCCAACCGGCTCCTCCTCCACGACATGCCCTCCG ACGGCGTCGCGCCCGACGCGGAGTCGTACTCCCCCATCCTCGCCGCGCTGGCGCGCCGCG GGCGGCACCTCGCGGCCGTGTCGCTCTTCACGCACATGCGCGCCGTGGCTCGCGTCAAGC CCGACCTGTCCGTGTTCAACATCGTGCTCAACGCGTACGGGCAGCTCGACCTCGCGCGGG AGGCGGACCGGCTGTTCTGGTCCATGCGCCGTGCTGGTGTCGCCCCGAGCGTGGTCACCT ACAACACCATGCTCCGCGTGTACGGCGACGCCGGGCTGTTCGGGGAGGCGGTCCACCTGT TCGGCCTCATGCGTAGCGCCGCCTCCGATGGCAGCGACCGCGGTGGCAGCGTCATCAAGC CGAACGTGGTGACGTACAACACCATGATCGCCATCTACGGCAAGTCGCTGGAGGACGAGA AAGCCGGGAGCCTGGTGCAGGACATGCAGGCCAATGGCATCCAGCCCAATGCCATCACCT ACTCAACCATCCTGTCCATATGGGTGAAGGCCGGGAAGCTCGACCGTGCCGGGAAGCTGT TCGAGAAGCTCCGGGAAGCCGGCACGGAGATCGACCCGGTGCTTTACCAGACGATGGTCG TGGCCTACGAGCGTGCCGGGCTTGTTTCACAATCCAAGCGCCTGTTGCATGACCTCAAAG ACTCAGAGGACGTCCCCAAGGAGACAGCCATCAAAATCTTGGCGAATGCCGGCCGAGTGG AGGAGGCCGCATGGCTGTTCCGCCGTGCAGCCGACGCCGGCGACGTCAGGGACACATCGG TGTACCGAATGATGATTGACTTGTTCGCAAAGAGCCGGAGGCACCGGAGTGTGATCGAGG TGTTCGACGAAATGAGGAAGGCGGGGTCTTTGCCGGACTCGGAGACGATCGCCATCACGA TGAATGCTCATGGTAAGCTGAAGGAGTTCGACAAGGCGGCGGCGCTGTACCGGGCGATGA GGGAGGAAGGATGCGTCTTCTCAGACAGGGTGCACTTCCAGATGGTCAGCCTGCTCGGCG CCCAGAAGGACTTCGACGCGCTGGAGGCACTGCTCGGTGAGCTTAGCGATGACCCGAGCA TCGACAAGAGGGAGCTTTACCTTGTGGCTGCCGGCGTGTACGAGAGAGCATGCAAGTTTG ATGAGTCGTCACAGATTATCAGCCAGATAAGAAGCCCCAACGCCATTGGTGTCCAGAAGT TCAGATGAGAACCTCCAGTTTCTCTGACGACAAATTCAGGTGTATTGCCAGACAGCAATA CACACCATAGTGTCATTGACAATTCAAGGTTGTAACTTGTAAGTGCGCGTGGCCACTGTG GAAGTTCTTTTTCAATTAAATTTTAGACACCAAAGTGTTATC