Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0832300-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:35619733:35625793:1 gene:Os01g0832300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALCIUM-DEPENDENT PROTEIN KINASE 3 description:Similar to Calcium-dependent protein kinase. (Os01t0832300-00)
Sequence

ATGGGGAACTGCTGCCGCTCGCCGGCCGCCGCGGCGCGGGAGGACGTCAAGTCGTCTCAC
TTCCCCGCATCGGCCGGGAAGAAGAAGCCCCACCAGGCGCGGAACGGCGGCGTGGGGGGA
GGCGGCGGCGGGGGCGGCGGCGGCGGAGGAGGAGGAGGAGCGGGGCAGAAGCGGCTCCCC
GTGCTCGGGGAGGAAGGGTGCGAGCTGATCGGAGGGATCGACGACAAGTACGCGCTGGAC
CGGGAGCTCGGGCGGGGGGAGTTCGGGGTGACGTACCTGTGCATGGATCGGGACACCAAG
GAGCTGCTCGCCTGCAAGTCCATCTCCAAGCGGAAGCTGAGGACGGCGGTCGACGTGGAG
GACGTGCGCCGGGAGGTCGCCATCATGCGCCACCTCCCCAAGAGCGCCAGCATCGTGTCG
CTGCGGGAGGCGTGCGAGGACGAGGGCGCCGTGCACCTCGTCATGGAGCTCTGCGAAGGC
GGGGAGCTCTTCGACCGCATCGTCGCGCGGGGCCACTACACGGAGCGCGCCGCCGCCAAT
GTCACCCGCACCATCGTGGAGGTCGTCCAGCTCTGCCACCGCCACGGCGTTATCCACCGG
GACCTCAAGCCCGAGAACTTCCTCTTCGCCAACAAGAAGGAGAACTCGCCGCTCAAGGCC
ATCGATTTCGGCCTCTCCATCTTCTTCAAGCCCGGTGAGAAGTTTTCTGAAATTGTGGGA
AGCCCATATTACATGGCTCCAGAGGTATTGAAGAGAAACTATGGTCCGGAAATAGATATT
TGGAGTGCAGGAGTTATCTTGTATATTTTGTTATGTGGAGTTCCTCCATTTTGGGCTGAG
ACTGAGCAAGGGGTGGCACAAGCCATTCTTCGTGGAAATATCGATTTCAAACGCGAACCC
TGGCCAAATGTTTCAGAAAATGCTAAAGATTTGGTTCGACGCATGTTGGAGCCTGATCCA
AAACTCAGGTTAACTGCAAAGCAAGTTCTTGAACATCCATGGCTTCAAAATGCTAAGAAA
GCTCCAAATGTTCCTCTTGGAGATATTGTGAAGTCAAGGCTCAAACAATTTTCTAGAATG
AATAGATTCAAAAGAAGAGCACTAAGGGTCATTGCCGATCATTTATCTGCTGAGGAAGTT
GAGGACATAAAGGAGATGTTCAAGGCTATGGACACTGATAACGATGGCATTGTATCTTAT
GAAGAATTAAAGAGCGGGATAGCAAAATTTGGTTCTCATCTGGCAGAATCGGAAGTGCAG
ATGCTTATCGAAGCTGTGGATACAAATGGTAAGGATGCTCTAGATTATGGTGAATTTTTG
GCTGTCTCTCTTCATTTGCAAAGGATGGCAAATGATGAGCACCTCCGGCGAGCCTTCCTA
TTTTTTGACAAGGATGGCAATGGCTACATAGAGCCTGAAGAGCTTCGAGAGGCTCTAGTG
GACGATGGAGCAGGTGACAGCATGGAAGTGGTGAACGACATATTGCAAGAAGTTGACACT
GATAAGGATGGCAAGATTAGCTATGACGAATTTGTAGCAATGATGAAGACGGGCACAGAT
TGGAGAAAGGCGTCCCGGCATTACTCTAGAGGAAGATTCAACAGCCTTAGCATGAAGCTT
ATAAAGGATGGGTCCGTAAAACTGGTCAATGAGTGA

Peptide Sequence

PEP ID

Os01t0832300-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:35619733:35625793:1 gene:Os01g0832300 transcript:Os01t0832300-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALCIUM-DEPENDENT PROTEIN KINASE 3 description:Similar to Calcium-dependent protein kinase. (Os01t0832300-00)
Sequence

MGNCCRSPAAAAREDVKSSHFPASAGKKKPHQARNGGVGGGGGGGGGGGGGGGAGQKRLP
VLGEEGCELIGGIDDKYALDRELGRGEFGVTYLCMDRDTKELLACKSISKRKLRTAVDVE
DVRREVAIMRHLPKSASIVSLREACEDEGAVHLVMELCEGGELFDRIVARGHYTERAAAN
VTRTIVEVVQLCHRHGVIHRDLKPENFLFANKKENSPLKAIDFGLSIFFKPGEKFSEIVG
SPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAETEQGVAQAILRGNIDFKREP
WPNVSENAKDLVRRMLEPDPKLRLTAKQVLEHPWLQNAKKAPNVPLGDIVKSRLKQFSRM
NRFKRRALRVIADHLSAEEVEDIKEMFKAMDTDNDGIVSYEELKSGIAKFGSHLAESEVQ
MLIEAVDTNGKDALDYGEFLAVSLHLQRMANDEHLRRAFLFFDKDGNGYIEPEELREALV
DDGAGDSMEVVNDILQEVDTDKDGKISYDEFVAMMKTGTDWRKASRHYSRGRFNSLSMKL
IKDGSVKLVNE

Transcript Sequence

Transcript ID

Os01t0832300-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:35619733:35625793:1 gene:Os01g0832300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CALCIUM-DEPENDENT PROTEIN KINASE 3 description:Similar to Calcium-dependent protein kinase. (Os01t0832300-00)
Sequence

TCCTCTACTCATCTCCTCTCTCTCTTCTACCTCACTTCACCAATTCCTTCTCCTCCCATC
TCCCAATCCCCCACCGCGGCGCCCAATGCAGCACAAACCCTAGCCCTCCCTCCCCTTGAT
CTCGCGCGAGCATGGGGAACTGCTGCCGCTCGCCGGCCGCCGCGGCGCGGGAGGACGTCA
AGTCGTCTCACTTCCCCGCATCGGCCGGGAAGAAGAAGCCCCACCAGGCGCGGAACGGCG
GCGTGGGGGGAGGCGGCGGCGGGGGCGGCGGCGGCGGAGGAGGAGGAGGAGCGGGGCAGA
AGCGGCTCCCCGTGCTCGGGGAGGAAGGGTGCGAGCTGATCGGAGGGATCGACGACAAGT
ACGCGCTGGACCGGGAGCTCGGGCGGGGGGAGTTCGGGGTGACGTACCTGTGCATGGATC
GGGACACCAAGGAGCTGCTCGCCTGCAAGTCCATCTCCAAGCGGAAGCTGAGGACGGCGG
TCGACGTGGAGGACGTGCGCCGGGAGGTCGCCATCATGCGCCACCTCCCCAAGAGCGCCA
GCATCGTGTCGCTGCGGGAGGCGTGCGAGGACGAGGGCGCCGTGCACCTCGTCATGGAGC
TCTGCGAAGGCGGGGAGCTCTTCGACCGCATCGTCGCGCGGGGCCACTACACGGAGCGCG
CCGCCGCCAATGTCACCCGCACCATCGTGGAGGTCGTCCAGCTCTGCCACCGCCACGGCG
TTATCCACCGGGACCTCAAGCCCGAGAACTTCCTCTTCGCCAACAAGAAGGAGAACTCGC
CGCTCAAGGCCATCGATTTCGGCCTCTCCATCTTCTTCAAGCCCGGTGAGAAGTTTTCTG
AAATTGTGGGAAGCCCATATTACATGGCTCCAGAGGTATTGAAGAGAAACTATGGTCCGG
AAATAGATATTTGGAGTGCAGGAGTTATCTTGTATATTTTGTTATGTGGAGTTCCTCCAT
TTTGGGCTGAGACTGAGCAAGGGGTGGCACAAGCCATTCTTCGTGGAAATATCGATTTCA
AACGCGAACCCTGGCCAAATGTTTCAGAAAATGCTAAAGATTTGGTTCGACGCATGTTGG
AGCCTGATCCAAAACTCAGGTTAACTGCAAAGCAAGTTCTTGAACATCCATGGCTTCAAA
ATGCTAAGAAAGCTCCAAATGTTCCTCTTGGAGATATTGTGAAGTCAAGGCTCAAACAAT
TTTCTAGAATGAATAGATTCAAAAGAAGAGCACTAAGGGTCATTGCCGATCATTTATCTG
CTGAGGAAGTTGAGGACATAAAGGAGATGTTCAAGGCTATGGACACTGATAACGATGGCA
TTGTATCTTATGAAGAATTAAAGAGCGGGATAGCAAAATTTGGTTCTCATCTGGCAGAAT
CGGAAGTGCAGATGCTTATCGAAGCTGTGGATACAAATGGTAAGGATGCTCTAGATTATG
GTGAATTTTTGGCTGTCTCTCTTCATTTGCAAAGGATGGCAAATGATGAGCACCTCCGGC
GAGCCTTCCTATTTTTTGACAAGGATGGCAATGGCTACATAGAGCCTGAAGAGCTTCGAG
AGGCTCTAGTGGACGATGGAGCAGGTGACAGCATGGAAGTGGTGAACGACATATTGCAAG
AAGTTGACACTGATAAGGATGGCAAGATTAGCTATGACGAATTTGTAGCAATGATGAAGA
CGGGCACAGATTGGAGAAAGGCGTCCCGGCATTACTCTAGAGGAAGATTCAACAGCCTTA
GCATGAAGCTTATAAAGGATGGGTCCGTAAAACTGGTCAATGAGTGAAGGCCTAAGGGTG
ATAATTTTATGCGTGTAGTTTAGGCCTTTGGGCTCGCTAAGCAGAAACCCTTTCTCCTTT
TCTTCTCATGATTATTTTGCGTGGAAATTTAGATAGGTGGAACCTCCCGATTGGCTTACC
TGTGTAATTAGCTCATCTGACAAGCACGCGCCGAATGATATACCAAATGCTGTGCGCCTG
CTTAGCCCTCGTGGCCTTGTTCCTATGGGGTACCTGATGCCAAGTGTTGTACAATGTTTT
GCCGTGTTCAAATGCAATTTGTTCATTTGGGGTGCTATCTAGCCTGTCGC