Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0830500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:35525560:35527592:-1 gene:Os01g0830500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:2OG-Fe (II) oxygenase domain containing protein, 2OG-Fe (II) oxygenase family protein description:2OG-Fe(II) oxygenase domain containing protein. (Os01t0830500-01)
Sequence

ATGGCCGCCTCCTCCTCCACCGCCGCAGCGTCATCCATGTCCGGCGCCAACGGAGGAGGA
GGAGGAGGGAGCGTGTTCCCAGGCCCTCCCCCGCCGACGCCGTCGAACCACCACCACGCG
CTCCCGTCCTCCGGCGCCGCGGGTGGGGGCACGGACGCCGCGCTCTCGACGATCCTCCAG
CGCCTGCTCCTATCCTCTCCGGCGCCGATTCTACGCTCCCCGCTCTCCTCTCGCTCCAGG
GCCCCGCCGTCGCTGCCGCCTCTCGTTTCGCTTGGCTCTAGCGGCACCCTTCGTCTCGAC
GCCGCCGCCGACGTGGGGTACTTCCACCTCGAGGGACACGGCGTCCCTTCCCAGCTGCCG
TCCTCCGCGCTCGCCGAGCTCTCCCTCGTCGACGCGTCCGCGCGCCGCGCGTCGAACCTC
CTCACGCTCGGATTCACGGAGGAGGATCAGCAGGAAGCGGACGGCGCCGAGGACCCCGCC
CTGGTGTTCGACGTCGACGACGAGGGGGAGATGGGCGCGCTCCCGGCTGCGGCGGCGGAG
TACGCGCGGCGGATGCGGGACGTGGGCATGCAGGTGGTGGCGATGATGTCCGGGTGTCCC
GAGGTGGGCTTCGGGGAGGCGCCGTTCGCGGAAGGGAGGAGGAAGGCGAGGTGCTTGATG
TGGGTCTCCAAGGTTGCCGCTGGCGAGGCGGCGCCTCCGGCCGCCGGGAAGGCGAAGGCG
TACCCGTACGTCGTGGGCATCCATTGCCAGTGGGAAGCGTCCGGGAAGGAGGCGGCGCCG
GCGAGCTGGGTGATGGACGACGGCGGCGAGTGGACGGCCGTAGGCGCGCGCGACGGCGCA
CTCCTTGTCACCATCGGCAACATTGCTCAGGTGTGGAGCAATGGAAAGCTGAAGAAAGTG
AGAGGGATGGCTCGCCCCGTTTCTTCTGCACCCGGAGCAGGGCACGGCGCCGAGGCTGAC
CGCTTGTCAGTCACCGTGCTGATCACTCTCCCCTTGGACAGTGTCATCTCGCCATTGGTC
CCGGTCACGGATGCCGGAGAAGAGGGCGGCGACGACGAGGTGGATGGAGCCGGCGATGAT
GGGGATGGGTGGAGATTTCACTCGTTTTTACTCGAGGACCTTGCGTGGAGGGTGTATAAT
GGGCGGCTTCAGTTCAAGGACCCGCTGGTCCGGTATCGGATATAA

Peptide Sequence

PEP ID

Os01t0830500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:35525560:35527592:-1 gene:Os01g0830500 transcript:Os01t0830500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:2OG-Fe (II) oxygenase domain containing protein, 2OG-Fe (II) oxygenase family protein description:2OG-Fe(II) oxygenase domain containing protein. (Os01t0830500-01)
Sequence

MAASSSTAAASSMSGANGGGGGGSVFPGPPPPTPSNHHHALPSSGAAGGGTDAALSTILQ
RLLLSSPAPILRSPLSSRSRAPPSLPPLVSLGSSGTLRLDAAADVGYFHLEGHGVPSQLP
SSALAELSLVDASARRASNLLTLGFTEEDQQEADGAEDPALVFDVDDEGEMGALPAAAAE
YARRMRDVGMQVVAMMSGCPEVGFGEAPFAEGRRKARCLMWVSKVAAGEAAPPAAGKAKA
YPYVVGIHCQWEASGKEAAPASWVMDDGGEWTAVGARDGALLVTIGNIAQVWSNGKLKKV
RGMARPVSSAPGAGHGAEADRLSVTVLITLPLDSVISPLVPVTDAGEEGGDDEVDGAGDD
GDGWRFHSFLLEDLAWRVYNGRLQFKDPLVRYRI

Transcript Sequence

Transcript ID

Os01t0830500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:35525560:35527592:-1 gene:Os01g0830500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:2OG-Fe (II) oxygenase domain containing protein, 2OG-Fe (II) oxygenase family protein description:2OG-Fe(II) oxygenase domain containing protein. (Os01t0830500-01)
Sequence

AAGGCGCCAACGCCTCCCACCAGCCACGATTCCCAGTTTCCTACCAAAAACTTGTTTCTC
CTCCACGTCGGTCGAGTCCGAGTCCACCGCTCCGGCCGCCGTCTCCATGGCCGCCTCCTC
CTCCACCGCCGCAGCGTCATCCATGTCCGGCGCCAACGGAGGAGGAGGAGGAGGGAGCGT
GTTCCCAGGCCCTCCCCCGCCGACGCCGTCGAACCACCACCACGCGCTCCCGTCCTCCGG
CGCCGCGGGTGGGGGCACGGACGCCGCGCTCTCGACGATCCTCCAGCGCCTGCTCCTATC
CTCTCCGGCGCCGATTCTACGCTCCCCGCTCTCCTCTCGCTCCAGGGCCCCGCCGTCGCT
GCCGCCTCTCGTTTCGCTTGGCTCTAGCGGCACCCTTCGTCTCGACGCCGCCGCCGACGT
GGGGTACTTCCACCTCGAGGGACACGGCGTCCCTTCCCAGCTGCCGTCCTCCGCGCTCGC
CGAGCTCTCCCTCGTCGACGCGTCCGCGCGCCGCGCGTCGAACCTCCTCACGCTCGGATT
CACGGAGGAGGATCAGCAGGAAGCGGACGGCGCCGAGGACCCCGCCCTGGTGTTCGACGT
CGACGACGAGGGGGAGATGGGCGCGCTCCCGGCTGCGGCGGCGGAGTACGCGCGGCGGAT
GCGGGACGTGGGCATGCAGGTGGTGGCGATGATGTCCGGGTGTCCCGAGGTGGGCTTCGG
GGAGGCGCCGTTCGCGGAAGGGAGGAGGAAGGCGAGGTGCTTGATGTGGGTCTCCAAGGT
TGCCGCTGGCGAGGCGGCGCCTCCGGCCGCCGGGAAGGCGAAGGCGTACCCGTACGTCGT
GGGCATCCATTGCCAGTGGGAAGCGTCCGGGAAGGAGGCGGCGCCGGCGAGCTGGGTGAT
GGACGACGGCGGCGAGTGGACGGCCGTAGGCGCGCGCGACGGCGCACTCCTTGTCACCAT
CGGCAACATTGCTCAGGTGTGGAGCAATGGAAAGCTGAAGAAAGTGAGAGGGATGGCTCG
CCCCGTTTCTTCTGCACCCGGAGCAGGGCACGGCGCCGAGGCTGACCGCTTGTCAGTCAC
CGTGCTGATCACTCTCCCCTTGGACAGTGTCATCTCGCCATTGGTCCCGGTCACGGATGC
CGGAGAAGAGGGCGGCGACGACGAGGTGGATGGAGCCGGCGATGATGGGGATGGGTGGAG
ATTTCACTCGTTTTTACTCGAGGACCTTGCGTGGAGGGTGTATAATGGGCGGCTTCAGTT
CAAGGACCCGCTGGTCCGGTATCGGATATAAGATTTGTCCATGGTCGTCGGCATGTTGCA
TAGCTTTGTTTTGTTTGTTGGTGTGTGTGTGGATTGGTTGTAATCCTAGTATTGGAGTGG
TTTGAGCACGAGTGAATCATTCATCGTGTGAAAAAAATATACGAACTGAACCAGGAAATG
GCTCATTTTCGTG