Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0830000-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:35505513:35508520:-1 gene:Os01g0830000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABC TRANSPORTER I FAMILY MEMBER 5 description:Similar to Plastid sufB (Fragment). (Os01t0830000-01)
Sequence	ATGGCCGCAGCCGCCGCGTCGTCCACGCCCCTCTTCTCGCCCTGCTGCGCCGCCGCGACC GCCAAGCTCGGGGCGGCGTGCCCGTCGTCGTACGGATCCCGGCGGAGGCCGTGCACGCGC CGTGGACGCCTCTCGGTGGTGGCCGTGCAGACGGGCCCGCAGAAGCCATCGCCGTCGTCG TCGTCCCAGGCGGGGACGGAATCGGAGACGCTGCAGAACCTGCTGAAGAGGGAGTACAAG TATGGGTTCGTGTCTGATTTCGAGTCCTTCTCCATCCCCAAGGGGCTCTCCGAGGCCACG GTCCGCCGCATCTCGGAGCTCAAGGCGGAGCCGGCGTGGATGCTCGACTTCCGCCTCGCC GCCTACCGCCGGTTCCTGACCATGGTGCAGCCCACCTGGAGCGACAACGTGTACGAGCCG GTGGATCTCCAGTCCATCTGCTACTACTCCGCGCCCAAGACCAAGCCCAAGCTCAACAGC CTCGACGAGGTCGACCCGGAGCTTCTCAACACCTTCGATCGCCTCGGGATCCCGCTCAGC GAGCAGAAGCGCCTCGCCAACGTCGCCGTCGATGCCGTCATCGACTCCACCTCCATCGCC ACCACCCACCGGGAGGAGCTCATGAAGAAGGGCGTCATCTTTTGCTCCATTTCCGAGGCC ATCCGCGAGTACCCGGACCTTGTCAAGCGCTACCTTGGCAGCGTCGTGCCGCCGGCAGAT AACTACTATGCTGCCCTCAATTCGGCCGTGTTCAGCGATGGGTCGTTCTGCTATGTGCCC AAGGATACGGTTTGCCCAATGGAGATATCGACATACTTTAGGATCAACGACAAGGAGACC GGGCAATTTGAGAGGACTCTAATTGTGGCTGATGAGAGGAGCACGGTTAGCTATCTGGAA GGGTGTACTGCTCCAGCTTATGACTCCAACCAGCTCCATGCGGCGGTTGTGGAGCTTGTG TGTGAGGAGCAGGCAGAGATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGATGAG GAGGGGAAGGGGGGCATTTACAACTTTGTTACTAAGAGAGGACGGTGCAAAGGGCGGGGC TCTAAGATCTCATGGACACAGGTTGAGACAGGTTCAGCAATTACATGGAAGTACCCAAGT GTGGAGCTTCTTGGGGATGATACTGTTGGAGAGTTCTACTCAGTTGCACTGACGAAGGAT TACCAGCAGGCAGACACAGGGACAAAAATGATCCACAAGGGAAAGAATTCGCGGAGTCGG ATTATATCCAAAGGTATCTCAGCTGGGAAGTCACGGAATTGCTACCGTGGGTTGGTCCAG ATAAACTCAGGCGCAGAAAATGCTTATAATTCTTCACAGTGTGATTCTTTGCTGATTGGG GATAACGCTGCTGCCAACACCTATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTT GAGCATGAGGCAAGCACTTCAAAAATAGGGGAGGACCAGCTATTTTATTTCCAACAAAGG GGGATAGACCATGAAAAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTC GAGAATCTTCCTTACGAGTTTGCACATGAGATGGATGCACTTATGAACCTGAAGCTTGAG GGATCAGTTGGTTAA

Peptide Sequence

PEP ID	Os01t0830000-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:35505513:35508520:-1 gene:Os01g0830000 transcript:Os01t0830000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABC TRANSPORTER I FAMILY MEMBER 5 description:Similar to Plastid sufB (Fragment). (Os01t0830000-01)
Sequence	MAAAAASSTPLFSPCCAAATAKLGAACPSSYGSRRRPCTRRGRLSVVAVQTGPQKPSPSS SSQAGTESETLQNLLKREYKYGFVSDFESFSIPKGLSEATVRRISELKAEPAWMLDFRLA AYRRFLTMVQPTWSDNVYEPVDLQSICYYSAPKTKPKLNSLDEVDPELLNTFDRLGIPLS EQKRLANVAVDAVIDSTSIATTHREELMKKGVIFCSISEAIREYPDLVKRYLGSVVPPAD NYYAALNSAVFSDGSFCYVPKDTVCPMEISTYFRINDKETGQFERTLIVADERSTVSYLE GCTAPAYDSNQLHAAVVELVCEEQAEIKYSTVQNWYSGDEEGKGGIYNFVTKRGRCKGRG SKISWTQVETGSAITWKYPSVELLGDDTVGEFYSVALTKDYQQADTGTKMIHKGKNSRSR IISKGISAGKSRNCYRGLVQINSGAENAYNSSQCDSLLIGDNAAANTYPTIQVGCISSRV EHEASTSKIGEDQLFYFQQRGIDHEKAVAAMIGGFCRAVFENLPYEFAHEMDALMNLKLE GSVG

Transcript Sequence

Transcript ID	Os01t0830000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:35505513:35508520:-1 gene:Os01g0830000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ABC TRANSPORTER I FAMILY MEMBER 5 description:Similar to Plastid sufB (Fragment). (Os01t0830000-01)
Sequence	ATCCGCATCCCTAATTTCGCCTCGGCCTCGCCACGCCGCCGCACCATGGCCGCAGCCGCC GCGTCGTCCACGCCCCTCTTCTCGCCCTGCTGCGCCGCCGCGACCGCCAAGCTCGGGGCG GCGTGCCCGTCGTCGTACGGATCCCGGCGGAGGCCGTGCACGCGCCGTGGACGCCTCTCG GTGGTGGCCGTGCAGACGGGCCCGCAGAAGCCATCGCCGTCGTCGTCGTCCCAGGCGGGG ACGGAATCGGAGACGCTGCAGAACCTGCTGAAGAGGGAGTACAAGTATGGGTTCGTGTCT GATTTCGAGTCCTTCTCCATCCCCAAGGGGCTCTCCGAGGCCACGGTCCGCCGCATCTCG GAGCTCAAGGCGGAGCCGGCGTGGATGCTCGACTTCCGCCTCGCCGCCTACCGCCGGTTC CTGACCATGGTGCAGCCCACCTGGAGCGACAACGTGTACGAGCCGGTGGATCTCCAGTCC ATCTGCTACTACTCCGCGCCCAAGACCAAGCCCAAGCTCAACAGCCTCGACGAGGTCGAC CCGGAGCTTCTCAACACCTTCGATCGCCTCGGGATCCCGCTCAGCGAGCAGAAGCGCCTC GCCAACGTCGCCGTCGATGCCGTCATCGACTCCACCTCCATCGCCACCACCCACCGGGAG GAGCTCATGAAGAAGGGCGTCATCTTTTGCTCCATTTCCGAGGCCATCCGCGAGTACCCG GACCTTGTCAAGCGCTACCTTGGCAGCGTCGTGCCGCCGGCAGATAACTACTATGCTGCC CTCAATTCGGCCGTGTTCAGCGATGGGTCGTTCTGCTATGTGCCCAAGGATACGGTTTGC CCAATGGAGATATCGACATACTTTAGGATCAACGACAAGGAGACCGGGCAATTTGAGAGG ACTCTAATTGTGGCTGATGAGAGGAGCACGGTTAGCTATCTGGAAGGGTGTACTGCTCCA GCTTATGACTCCAACCAGCTCCATGCGGCGGTTGTGGAGCTTGTGTGTGAGGAGCAGGCA GAGATCAAGTACTCTACGGTGCAGAATTGGTACTCTGGTGATGAGGAGGGGAAGGGGGGC ATTTACAACTTTGTTACTAAGAGAGGACGGTGCAAAGGGCGGGGCTCTAAGATCTCATGG ACACAGGTTGAGACAGGTTCAGCAATTACATGGAAGTACCCAAGTGTGGAGCTTCTTGGG GATGATACTGTTGGAGAGTTCTACTCAGTTGCACTGACGAAGGATTACCAGCAGGCAGAC ACAGGGACAAAAATGATCCACAAGGGAAAGAATTCGCGGAGTCGGATTATATCCAAAGGT ATCTCAGCTGGGAAGTCACGGAATTGCTACCGTGGGTTGGTCCAGATAAACTCAGGCGCA GAAAATGCTTATAATTCTTCACAGTGTGATTCTTTGCTGATTGGGGATAACGCTGCTGCC AACACCTATCCGACTATTCAGGTGGGTTGCATTTCTAGTCGTGTTGAGCATGAGGCAAGC ACTTCAAAAATAGGGGAGGACCAGCTATTTTATTTCCAACAAAGGGGGATAGACCATGAA AAGGCTGTTGCAGCGATGATTGGTGGATTCTGCAGGGCTGTTTTCGAGAATCTTCCTTAC GAGTTTGCACATGAGATGGATGCACTTATGAACCTGAAGCTTGAGGGATCAGTTGGTTAA TTAGATGGAGCAAAATGTCTTTGCAGTACAACACAACAATTATTTAGATGTCCTTTGTAC AGAAGTATGAGAAGAATAAATTGCATGAGCAATGGACGTTTTCCTAGCCTTGTCTACCAC TAGGGATGTCCTTGGCAACAAAGAAAATTCTGTTACTTATCTACTGTTTTATCCCTTTTT GTTTCTGTTTCTTCTGTTGTAAACAAACCCTTATTAGAATGCGTAGCCACACTAGAAATG TCTCCAAAAAAGCTACACAAGAAATGGAATCTGCTTTTTTAGACTTATTTGCATTGT