Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0827300-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:35402795:35405298:1 gene:Os01g0827300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LACCASE 3 description:Putative laccase precursor, Abiotic stress response (Os01t0827300-01)
Sequence	ATGGCGTCGTCCTCGTCGTCCCGGCTGCTCTTCCTCCTCTCGTGCAGCGTGCTCGCGCTG CTCGCCGGCGCCGAAGTGCACCATCATGAATTCATTGTTCAAGAGACGCCGGTGAAGAGG CTGTGCAAGACACACAACGTGATCACGGTGAACGGGCAGCTGCCGGGGCCGACGCTGGAG GTCCGGGAGGGCGACACCGTGGTGATCAACGTCGTCAACCACGCGCAGTACAACGTCACC ATCCATTGGCACGGCATCCGGCAGTTCAGGACGGGGTGGGCGGACGGGCCGGAGTTCGTG ACACAGTGCCCGATCAAGCCGGGCGGCAGCTACAAGTACCGGTTCACCATCGAGGGGCAG GAGGGCACGCTGTGGTGGCACGCGCACAGCTCCTGGCTCAGGGCCACCGTCTACGGCGCG CTCATCATCCGCCCCAGGGAGAACAAGACCTACCCCTTCGAGAAGCCCGCGCGAGAAGTC CCCCTTATTCTCGGGGAATGGTGGGACGCGGACCCGATCCAAGTCATCAGGGAGGCTCAG AGGACCGGCGCCGCGCCGAACATCTCCGACGCGTACACCATCAACGGTCAGCCTGGTGAT CTGTACAACTGCTCCAAGGAAGAGACCACGGCTGTCCCGGTGAAGCCCGGCGAGACGGCG CTGCTGCGGTTCATCAACGCGGCACTCAACCAGGAGCTGTTCGTCTCGATCGCGCAGCAC AAGATGACCGTGGTCGGCGTCGACGCGTCCTACACCAAGCCGTTCACCACCTCGGTGCTC ATGATCGCGCCGGGCCAGACCACCGACGTCCTCGTCACCATGGACCAGGCGCCCACCCGG TACTACCTCGCCGCGCGCGCCTACGACTCCGCGCAGGGCGTGGCCTTTGACAACACCACC ACCACGGCCGTCATCGAGTACGACTGCGGCTGCGCCACCGACTTCGGCCCCTCCATCCCG CCGGCGTTCCCGGTCCTCCCGGCGTTCAACGACACCAACACCGCCACCGCCTTCGCCGCG GGCATCAGGAGCCCCCACGAGGTCAAGATCCCCGGCCCCGTCGACGAGAACCTCTTCTTC ACCGTCGGTGTCGGCCTGTTCAACTGCGAGCCCGGGCAGCAGTGCGGTGGCCCGAACAAC ACTCGCTTCACGGCCAGCATGAACAACATCTCCTTCGTCTTCCCGCAGACCACCTCGCTC CTCCACGCGCACTACTACGGCATCCCCGGCGTGTTCACCACCGACTTCCCGGCGTACCCG CCGGTGCAGTTCGACTACACGGCGCAGAACGTCCCCCGCTACCTGTGGCAGCCCGTCCCG GCGACGAAGCTGTACAAGCTCAAGTTCGGCTCCGTGGTGCAGATCGTCCTGCAGGACACC AGCATCGTCTCGCCGGAGAACCACCCCATCCACATCCACGGCTACGACTTCTACATCCTC GCCGAGGGCTTCGGCAACTTCGACCCCAAGAAGGACGCCAAGAAGTTCAACTACGTCGAC CCGCCACAGAGGAACACCGTCGCGGTGCCGACAAACGGCTGGGCCGTCATCCGGTTCGTC GCCGACAACCCTGGGGTGTGGCTCATGCATTGCCATCTTGACGTGCACATAACCTGGGGC CTGGCAATGGCGTTCCTGGTGGAGGATGGGTATGGCAAACTGGAGACTCTGGAGGCGCCT CCTGTTGATCTTCCAATGTGCTAG

Peptide Sequence

PEP ID	Os01t0827300-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:35402795:35405298:1 gene:Os01g0827300 transcript:Os01t0827300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LACCASE 3 description:Putative laccase precursor, Abiotic stress response (Os01t0827300-01)
Sequence	MASSSSSRLLFLLSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLE VREGDTVVINVVNHAQYNVTIHWHGIRQFRTGWADGPEFVTQCPIKPGGSYKYRFTIEGQ EGTLWWHAHSSWLRATVYGALIIRPRENKTYPFEKPAREVPLILGEWWDADPIQVIREAQ RTGAAPNISDAYTINGQPGDLYNCSKEETTAVPVKPGETALLRFINAALNQELFVSIAQH KMTVVGVDASYTKPFTTSVLMIAPGQTTDVLVTMDQAPTRYYLAARAYDSAQGVAFDNTT TTAVIEYDCGCATDFGPSIPPAFPVLPAFNDTNTATAFAAGIRSPHEVKIPGPVDENLFF TVGVGLFNCEPGQQCGGPNNTRFTASMNNISFVFPQTTSLLHAHYYGIPGVFTTDFPAYP PVQFDYTAQNVPRYLWQPVPATKLYKLKFGSVVQIVLQDTSIVSPENHPIHIHGYDFYIL AEGFGNFDPKKDAKKFNYVDPPQRNTVAVPTNGWAVIRFVADNPGVWLMHCHLDVHITWG LAMAFLVEDGYGKLETLEAPPVDLPMC

Transcript Sequence

Transcript ID	Os01t0827300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:35402795:35405298:1 gene:Os01g0827300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LACCASE 3 description:Putative laccase precursor, Abiotic stress response (Os01t0827300-01)
Sequence	ATCGCCACACAGAAACCTTCAGGGCAAGAGCTATAGCTAAGCTACTGTGTCACCCGTTCG ATCGGTGAGCCGACGCCAGCACACGCGCCGCAACGTTTGCGCTTAGCCGGCATGGCGTCG TCCTCGTCGTCCCGGCTGCTCTTCCTCCTCTCGTGCAGCGTGCTCGCGCTGCTCGCCGGC GCCGAAGTGCACCATCATGAATTCATTGTTCAAGAGACGCCGGTGAAGAGGCTGTGCAAG ACACACAACGTGATCACGGTGAACGGGCAGCTGCCGGGGCCGACGCTGGAGGTCCGGGAG GGCGACACCGTGGTGATCAACGTCGTCAACCACGCGCAGTACAACGTCACCATCCATTGG CACGGCATCCGGCAGTTCAGGACGGGGTGGGCGGACGGGCCGGAGTTCGTGACACAGTGC CCGATCAAGCCGGGCGGCAGCTACAAGTACCGGTTCACCATCGAGGGGCAGGAGGGCACG CTGTGGTGGCACGCGCACAGCTCCTGGCTCAGGGCCACCGTCTACGGCGCGCTCATCATC CGCCCCAGGGAGAACAAGACCTACCCCTTCGAGAAGCCCGCGCGAGAAGTCCCCCTTATT CTCGGGGAATGGTGGGACGCGGACCCGATCCAAGTCATCAGGGAGGCTCAGAGGACCGGC GCCGCGCCGAACATCTCCGACGCGTACACCATCAACGGTCAGCCTGGTGATCTGTACAAC TGCTCCAAGGAAGAGACCACGGCTGTCCCGGTGAAGCCCGGCGAGACGGCGCTGCTGCGG TTCATCAACGCGGCACTCAACCAGGAGCTGTTCGTCTCGATCGCGCAGCACAAGATGACC GTGGTCGGCGTCGACGCGTCCTACACCAAGCCGTTCACCACCTCGGTGCTCATGATCGCG CCGGGCCAGACCACCGACGTCCTCGTCACCATGGACCAGGCGCCCACCCGGTACTACCTC GCCGCGCGCGCCTACGACTCCGCGCAGGGCGTGGCCTTTGACAACACCACCACCACGGCC GTCATCGAGTACGACTGCGGCTGCGCCACCGACTTCGGCCCCTCCATCCCGCCGGCGTTC CCGGTCCTCCCGGCGTTCAACGACACCAACACCGCCACCGCCTTCGCCGCGGGCATCAGG AGCCCCCACGAGGTCAAGATCCCCGGCCCCGTCGACGAGAACCTCTTCTTCACCGTCGGT GTCGGCCTGTTCAACTGCGAGCCCGGGCAGCAGTGCGGTGGCCCGAACAACACTCGCTTC ACGGCCAGCATGAACAACATCTCCTTCGTCTTCCCGCAGACCACCTCGCTCCTCCACGCG CACTACTACGGCATCCCCGGCGTGTTCACCACCGACTTCCCGGCGTACCCGCCGGTGCAG TTCGACTACACGGCGCAGAACGTCCCCCGCTACCTGTGGCAGCCCGTCCCGGCGACGAAG CTGTACAAGCTCAAGTTCGGCTCCGTGGTGCAGATCGTCCTGCAGGACACCAGCATCGTC TCGCCGGAGAACCACCCCATCCACATCCACGGCTACGACTTCTACATCCTCGCCGAGGGC TTCGGCAACTTCGACCCCAAGAAGGACGCCAAGAAGTTCAACTACGTCGACCCGCCACAG AGGAACACCGTCGCGGTGCCGACAAACGGCTGGGCCGTCATCCGGTTCGTCGCCGACAAC CCTGGGGTGTGGCTCATGCATTGCCATCTTGACGTGCACATAACCTGGGGCCTGGCAATG GCGTTCCTGGTGGAGGATGGGTATGGCAAACTGGAGACTCTGGAGGCGCCTCCTGTTGAT CTTCCAATGTGCTAGTGATCAGCATTCGGCAGATGATGATACTGCGTTAAGAATACAAAA TCCCGTTCATGTCGTATTCCAAATTGATGCTTTTTGGGGGTTTATTTTGTGATCTCCAGT ACTAGGGGTTGATTTTTCATCTTGATTTGAGCTTTCCCCTGTAAAGTTAAGAGTTTTTAT GTGATTTCTATGCATTATTTTGGAATAAATCCTTTTTGTAGC