Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0825700-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:35314473:35318814:-1 gene:Os01g0825700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to VHS2 protein (Fragment). (Os01t0825700-01)
Sequence	ATGCACCCGGCGGGGGCGGTGGTGGCGCCGGCGGCGGGCGCGCCCGCTCGGGCGGCGCCG CGGGTGGAGAAGGCGACAAGCCACCTGCTCATGGGGCCCGACTGGGCCGTCAACCTCGAA ATCTGCGACATCATCAACGCCGACGTCTGGCAAACAAAGGATGTGGTAAAGGCAGTGAAG AAGCGACTACAGAACAAAGACCCAAAAGTTCAGTTCTATGCTTTGACGCTCTTGGAGACT ATGATGAAGAATTGTGGTGAATATGTTCAACTTGAAGTTGCTGAGCAACATGTTCTGCAA GAAATGGTGAAAATCATCCAGAAGAAGAATGATATGTTAGTAAGGGATAAAATATTATTA CTTTTGGACTCCTGGCAAGAAGCATTTGGTGGACCTGGAAGTAAATACCCACAATATCAC TTTGCGTATCTTGAAGTAAAGAGGATAGGTGCCGTGTTCCCAAGGCGTCCTATAGATGCA CCACCGATATTTACACCCCCGGCGACACATACTTCTCAAAGCTATGGTTCACCCAGATAT GAGGCAGGAAGTCTGAATGAGATAATGTCTTCCGATGTTGAGACACTAAGTTTGGGTGAC CTGAATAACATTCGAAATGTGACAGAACTACTATGTGATATGGTGCATGCTTTGAATCCA TCTGATCACATGGCTGTCAAAGATGAAATTATCACAGATCTTGTGAGCCAATGTCGCTCA AACCAACAAAAGCTCATGCAGTTTGTCAGCTCAACAGGGAATGAACAGTTACTGAAGCAA GGTTTGGAGATAAATGATCGGCTACAAAATATTATTTCAAAATATGACATTATGGCCTCC AGTACTCATTTAGCAGTTGAAGCACCTCCGGCAGACAATGTTGAGGCTCCTAAAGAGGAT CCAGCAGAAAAGCCATCTGCACCTCCTATCAGCACTCTTGAGGAGGAGGAGGAGGAGGAG GATGAGTTCACTCGACTAGCACAAAGAAAAAATAAGTCTGTGATGACTAGTGATGATTCA TTATCTAGCACTGGAGACCTTGCCCTTGTACCCATTGATATGGAAAGTTCAGAATCTTCA TCTTCTGTTGCAAGCAATGCTTTAGTTCCTGTTGACCCAGCTCTTGTCAGTAGCAGTCCT CAAACAAAAGAGCAGGATATGATCGACCTTTTAAGCCTCACCTTGTGCAGTCCTACACAT GAAGCTTCTACAGATTCTTCAACGCAGGGTCCTAATGGACCTCAGCAGCCTGCAGTTACT GATGGGCAGCACAACCCATCGGGTGTGCCACAGTATCCTTCAAACCACCAGTCGCATCCA ATAAATCAGGAATATATTCGACAGAACAGAAACTATGTTGCACCTTGGGCACAAAGTGGT CAATATTATCCAGCACCACCATGGGCTGCACCTCCAAGTGTCAATTCTAATCCTTTCCAG TCAGCTACTTACCAAGAACAACCCCCACCTGTTGGTTCTGTTTCCTCAACCTATTCAGCT CCCTCAGCATCATATACTTCCCCTTCAATGGCATATGTGCCACCTTCAGCCTCATTGCCG ATATGGAATGGTTCTACTACAAGTAATGGACTAAGTGCAACACAAGCTCAAATGAATGGG AATCAACAACCGCCAGGTTCTTCAGCGGCAGCAAGCAAACCTTATTACATACCTGACAAT TTATTCAGTGATTTGATTGACTTGAAGGGTCTCAGTGGTGGAAATAAGATGGGCGTACCC ACTAGCATGGGTAGTGCAAATGGTGGTCAACCTACGATTGGTGGAAAGAAGTAG

Peptide Sequence

PEP ID	Os01t0825700-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:35314473:35318814:-1 gene:Os01g0825700 transcript:Os01t0825700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to VHS2 protein (Fragment). (Os01t0825700-01)
Sequence	MHPAGAVVAPAAGAPARAAPRVEKATSHLLMGPDWAVNLEICDIINADVWQTKDVVKAVK KRLQNKDPKVQFYALTLLETMMKNCGEYVQLEVAEQHVLQEMVKIIQKKNDMLVRDKILL LLDSWQEAFGGPGSKYPQYHFAYLEVKRIGAVFPRRPIDAPPIFTPPATHTSQSYGSPRY EAGSLNEIMSSDVETLSLGDLNNIRNVTELLCDMVHALNPSDHMAVKDEIITDLVSQCRS NQQKLMQFVSSTGNEQLLKQGLEINDRLQNIISKYDIMASSTHLAVEAPPADNVEAPKED PAEKPSAPPISTLEEEEEEEDEFTRLAQRKNKSVMTSDDSLSSTGDLALVPIDMESSESS SSVASNALVPVDPALVSSSPQTKEQDMIDLLSLTLCSPTHEASTDSSTQGPNGPQQPAVT DGQHNPSGVPQYPSNHQSHPINQEYIRQNRNYVAPWAQSGQYYPAPPWAAPPSVNSNPFQ SATYQEQPPPVGSVSSTYSAPSASYTSPSMAYVPPSASLPIWNGSTTSNGLSATQAQMNG NQQPPGSSAAASKPYYIPDNLFSDLIDLKGLSGGNKMGVPTSMGSANGGQPTIGGKK

Transcript Sequence

Transcript ID	Os01t0825700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:35314473:35318814:-1 gene:Os01g0825700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to VHS2 protein (Fragment). (Os01t0825700-01)
Sequence	ATTCGCTCGTCTCCTCGGGGGAGTCCAAACCCTAGGCTCTTCCTCCCCAGCGATGCACCC GGCGGGGGCGGTGGTGGCGCCGGCGGCGGGCGCGCCCGCTCGGGCGGCGCCGCGGGTGGA GAAGGCGACAAGCCACCTGCTCATGGGGCCCGACTGGGCCGTCAACCTCGAAATCTGCGA CATCATCAACGCCGACGTCTGGCAAACAAAGGATGTGGTAAAGGCAGTGAAGAAGCGACT ACAGAACAAAGACCCAAAAGTTCAGTTCTATGCTTTGACGCTCTTGGAGACTATGATGAA GAATTGTGGTGAATATGTTCAACTTGAAGTTGCTGAGCAACATGTTCTGCAAGAAATGGT GAAAATCATCCAGAAGAAGAATGATATGTTAGTAAGGGATAAAATATTATTACTTTTGGA CTCCTGGCAAGAAGCATTTGGTGGACCTGGAAGTAAATACCCACAATATCACTTTGCGTA TCTTGAAGTAAAGAGGATAGGTGCCGTGTTCCCAAGGCGTCCTATAGATGCACCACCGAT ATTTACACCCCCGGCGACACATACTTCTCAAAGCTATGGTTCACCCAGATATGAGGCAGG AAGTCTGAATGAGATAATGTCTTCCGATGTTGAGACACTAAGTTTGGGTGACCTGAATAA CATTCGAAATGTGACAGAACTACTATGTGATATGGTGCATGCTTTGAATCCATCTGATCA CATGGCTGTCAAAGATGAAATTATCACAGATCTTGTGAGCCAATGTCGCTCAAACCAACA AAAGCTCATGCAGTTTGTCAGCTCAACAGGGAATGAACAGTTACTGAAGCAAGGTTTGGA GATAAATGATCGGCTACAAAATATTATTTCAAAATATGACATTATGGCCTCCAGTACTCA TTTAGCAGTTGAAGCACCTCCGGCAGACAATGTTGAGGCTCCTAAAGAGGATCCAGCAGA AAAGCCATCTGCACCTCCTATCAGCACTCTTGAGGAGGAGGAGGAGGAGGAGGATGAGTT CACTCGACTAGCACAAAGAAAAAATAAGTCTGTGATGACTAGTGATGATTCATTATCTAG CACTGGAGACCTTGCCCTTGTACCCATTGATATGGAAAGTTCAGAATCTTCATCTTCTGT TGCAAGCAATGCTTTAGTTCCTGTTGACCCAGCTCTTGTCAGTAGCAGTCCTCAAACAAA AGAGCAGGATATGATCGACCTTTTAAGCCTCACCTTGTGCAGTCCTACACATGAAGCTTC TACAGATTCTTCAACGCAGGGTCCTAATGGACCTCAGCAGCCTGCAGTTACTGATGGGCA GCACAACCCATCGGGTGTGCCACAGTATCCTTCAAACCACCAGTCGCATCCAATAAATCA GGAATATATTCGACAGAACAGAAACTATGTTGCACCTTGGGCACAAAGTGGTCAATATTA TCCAGCACCACCATGGGCTGCACCTCCAAGTGTCAATTCTAATCCTTTCCAGTCAGCTAC TTACCAAGAACAACCCCCACCTGTTGGTTCTGTTTCCTCAACCTATTCAGCTCCCTCAGC ATCATATACTTCCCCTTCAATGGCATATGTGCCACCTTCAGCCTCATTGCCGATATGGAA TGGTTCTACTACAAGTAATGGACTAAGTGCAACACAAGCTCAAATGAATGGGAATCAACA ACCGCCAGGTTCTTCAGCGGCAGCAAGCAAACCTTATTACATACCTGACAATTTATTCAG TGATTTGATTGACTTGAAGGGTCTCAGTGGTGGAAATAAGATGGGCGTACCCACTAGCAT GGGTAGTGCAAATGGTGGTCAACCTACGATTGGTGGAAAGAAGTAGGTTTCTCTAATTGG TTGGTGGTGCCGTGGTGAACGTTAGGAATTCTGATCACTCAGTTTGGTGTACATTTCATG TATATCTCCCTTGCCCCATTTACATGTTTGGTTACATTGGTTCATTTCATGGCTGCTGAC TGTTCAGTCGAGTAGAGATGGTATACCATTATTACTGTACATAAATGATGAGTTGCGCAT TGCCTTGTTTTTACTTCGCGACTCATATTTTGATATGTTTGGCTTCTCATT