Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0823900-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:35185594:35188003:-1 gene:Os01g0823900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:arm repeat cell adhesion protein, arm repeat protein, plant U-box-containing protein 3, U-box protein 3 description:U-box E3ubiquitin ligase, Positive regulation of cold stress response (Os01t0823900-01)
Sequence	ATGGCTGGTAATCCGGCGGCGGCGGCGCCGTCGTCGTCTGGCTCTTCGTCGGTGTTCCTG CCGCCCCCGTCGCCGTCCGACGGGGAGCTGCTCCGGCCGCTGCACCGCCTGGCGCGCGAC CTGTCCGCCGTCGACACGCCCGCGCCGTTCCTGCGCGCCGCGTTCGCGTCCATCTCGAGG CGGTCCAAGCTACTGGCGGCCGCGTTCGACGACCTGCTGCTGTGCGGCGCCGCGGGGGAG CTGCCGCGGTCGGCGTCGCTGTGCCTGCGGGAGGTGCTCCTGGTGCTGCAGCGGTTCAAG GCGATCGTCGCCGATTGCTCGGCGCGCAGCCGGATGCGGCTGCTGCTGGAGTCCGACGAG ATGGAGGCGGAGCTGCGGGAGCTCAACCACGACCTGGCCACGCTGCTCGACCTGTTGCCG GTCGTCGAGCTGGGGCTTGCCGACGACGTGCTCGACGTCCTCGCCCTCGCGTCGCGCCAG TGCCGGCGGTGCTCGCCGGCACCGGAGTCGGAGGAGGCGCTGAAGGCGAGCGTGCTGTCG CTGATACAAGAGATCGAGCGGGAGATCGTGCCGGAGCGGGAGAGGCTGGAGGAGATCCTG GTGGAGGTCGGCATCAACGACCCGGCGAGCTGCAGCGAGGAGATCGAGAGCCTGGAGCAG GAGATCGGCGACCGTGCCTCGGAGAAATGGACGGCCTCCATGATCGCTCTCGTCGGCCTC CTCCGGTATGCCAAGTGCGTCCTGTTCAGCGCCACGCCTCGGCCTTCAGATTCCAATTCC AAGGCTGACGTCGAGGCTGAAGACGGCGAGCCCCCGGTGCCGCCGTCGGACTTCCGGTGC CCAATCTCTCTCGATCTAATGCGCGACCCCGTCGTCGTCGCGAGCGGCCAGACGTACGAT CGCGAGTCGATCGACCGGTGGTTCAGCTCCGGCAAGTCAACGTGCCCCAAGACAGGGCAG GTCTTGGCCAATCTGGAGCTCGTGTCGAACAAGGCCCTCAAGAACCTCATCTCCAAGTGG TGCCGGGAGAACGGCGTCGCCATGGAAGCCTGCGAGGCGAGCAAGAGCGAGCAGGCCCAG GCGGTGGCCGCCAACAAGGCCGCGCTCGAGGCGGCGCGCATGACGGCGTCGTTCCTTGTG AAGAAGCTGTCCGTCTCCTTCTCCCCAGATGCCGCCAACCGCGTCGTGCACGAGATCCGG CTGCTATCCAAGTCCGGCTCGGAGAACCGAGCGTTCGTCGGAGAGGCCGGAGCCGTGCCT CTGCTCGTGCCCCTGCTCTACTCCGAGGATGCAGGGCTCCAGCTCAACGCCGTCACGGCG CTGCTTAATCTCTCCATCCTCGAGGCCAACAAGAAGCGCATCATGCACGCCGACGGCGCC GTCGAGGCGGTCGCCCATATCATGAGCTCCGGCGCGACGTGGCGCGCCAAGGAGAACGCC GCCGCCGCCGTGCTCAGCTTGGCGTCCGTGCATTCCTACCGCCGCAGGCTCGGCAGGAAC CAATCCGTCGTGGAGAAATTAGTGCATCTCGTGCGCACCGGCCCGACGAGCACAAAGAAG GACGCATTGGCCGCGCTGCTGACGCTGGCCGGCGAGAGGGAGAACGTCGGCAAGCTCGTT GACGCAGGCGTCGCCGAGGTGGCGCTGTCAGCGATTAGCAAGGAGGAGACCGCCGCGGCG GTGCTCGCCGCGCTGGCCAAGCGCGGCGGTGCGGAGGCGATCGTCAACATCGACGGCGCC GTGGCGCGTCTCGTGGCGGAAATGAGGCGCGGCACGGACTGGGCCAGGGAGAACGCCACG GCGGCGCTCGTGCTGCTCTGCCGGCGCCTGGGCGCGCCGGCGGTGACCCAGGTCATGGCC GTGCCCGGCGTGGAATGGGCGATCTGGGAGCTGATGAGCATCGGCACGGAGCGCGCCCGG CGGAAGGCCGCCTCGCTCGGCCGGATATGCCGGCGGTGGGCAGCCGCCTCCGCCGCCGAC GGGGAGCGAGGCGGCGGTTGCCCCGTTGCCACCGTGGTGCCCCCTGCCATGATGGCTTCG TGA

Peptide Sequence

PEP ID	Os01t0823900-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:35185594:35188003:-1 gene:Os01g0823900 transcript:Os01t0823900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:arm repeat cell adhesion protein, arm repeat protein, plant U-box-containing protein 3, U-box protein 3 description:U-box E3ubiquitin ligase, Positive regulation of cold stress response (Os01t0823900-01)
Sequence	MAGNPAAAAPSSSGSSSVFLPPPSPSDGELLRPLHRLARDLSAVDTPAPFLRAAFASISR RSKLLAAAFDDLLLCGAAGELPRSASLCLREVLLVLQRFKAIVADCSARSRMRLLLESDE MEAELRELNHDLATLLDLLPVVELGLADDVLDVLALASRQCRRCSPAPESEEALKASVLS LIQEIEREIVPERERLEEILVEVGINDPASCSEEIESLEQEIGDRASEKWTASMIALVGL LRYAKCVLFSATPRPSDSNSKADVEAEDGEPPVPPSDFRCPISLDLMRDPVVVASGQTYD RESIDRWFSSGKSTCPKTGQVLANLELVSNKALKNLISKWCRENGVAMEACEASKSEQAQ AVAANKAALEAARMTASFLVKKLSVSFSPDAANRVVHEIRLLSKSGSENRAFVGEAGAVP LLVPLLYSEDAGLQLNAVTALLNLSILEANKKRIMHADGAVEAVAHIMSSGATWRAKENA AAAVLSLASVHSYRRRLGRNQSVVEKLVHLVRTGPTSTKKDALAALLTLAGERENVGKLV DAGVAEVALSAISKEETAAAVLAALAKRGGAEAIVNIDGAVARLVAEMRRGTDWARENAT AALVLLCRRLGAPAVTQVMAVPGVEWAIWELMSIGTERARRKAASLGRICRRWAAASAAD GERGGGCPVATVVPPAMMAS

Transcript Sequence

Transcript ID	Os01t0823900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:35185594:35188003:-1 gene:Os01g0823900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:arm repeat cell adhesion protein, arm repeat protein, plant U-box-containing protein 3, U-box protein 3 description:U-box E3ubiquitin ligase, Positive regulation of cold stress response (Os01t0823900-01)
Sequence	GGGGATTCCTTCCAGCTCTCAACCAACTCGTCACGCCACGCCTACCGCCTCCGAAGTTTA TAAACCTCTCTCTCTTTTCGAGCTCTCCGCTGCGTGTCCACCATTTCCGTTTGGTTTTAC TCCACTAATAAGCTAAGGATTTTTTCTTTTGGTTGTGGTTACTGCGCCAATGGCTGGTAA TCCGGCGGCGGCGGCGCCGTCGTCGTCTGGCTCTTCGTCGGTGTTCCTGCCGCCCCCGTC GCCGTCCGACGGGGAGCTGCTCCGGCCGCTGCACCGCCTGGCGCGCGACCTGTCCGCCGT CGACACGCCCGCGCCGTTCCTGCGCGCCGCGTTCGCGTCCATCTCGAGGCGGTCCAAGCT ACTGGCGGCCGCGTTCGACGACCTGCTGCTGTGCGGCGCCGCGGGGGAGCTGCCGCGGTC GGCGTCGCTGTGCCTGCGGGAGGTGCTCCTGGTGCTGCAGCGGTTCAAGGCGATCGTCGC CGATTGCTCGGCGCGCAGCCGGATGCGGCTGCTGCTGGAGTCCGACGAGATGGAGGCGGA GCTGCGGGAGCTCAACCACGACCTGGCCACGCTGCTCGACCTGTTGCCGGTCGTCGAGCT GGGGCTTGCCGACGACGTGCTCGACGTCCTCGCCCTCGCGTCGCGCCAGTGCCGGCGGTG CTCGCCGGCACCGGAGTCGGAGGAGGCGCTGAAGGCGAGCGTGCTGTCGCTGATACAAGA GATCGAGCGGGAGATCGTGCCGGAGCGGGAGAGGCTGGAGGAGATCCTGGTGGAGGTCGG CATCAACGACCCGGCGAGCTGCAGCGAGGAGATCGAGAGCCTGGAGCAGGAGATCGGCGA CCGTGCCTCGGAGAAATGGACGGCCTCCATGATCGCTCTCGTCGGCCTCCTCCGGTATGC CAAGTGCGTCCTGTTCAGCGCCACGCCTCGGCCTTCAGATTCCAATTCCAAGGCTGACGT CGAGGCTGAAGACGGCGAGCCCCCGGTGCCGCCGTCGGACTTCCGGTGCCCAATCTCTCT CGATCTAATGCGCGACCCCGTCGTCGTCGCGAGCGGCCAGACGTACGATCGCGAGTCGAT CGACCGGTGGTTCAGCTCCGGCAAGTCAACGTGCCCCAAGACAGGGCAGGTCTTGGCCAA TCTGGAGCTCGTGTCGAACAAGGCCCTCAAGAACCTCATCTCCAAGTGGTGCCGGGAGAA CGGCGTCGCCATGGAAGCCTGCGAGGCGAGCAAGAGCGAGCAGGCCCAGGCGGTGGCCGC CAACAAGGCCGCGCTCGAGGCGGCGCGCATGACGGCGTCGTTCCTTGTGAAGAAGCTGTC CGTCTCCTTCTCCCCAGATGCCGCCAACCGCGTCGTGCACGAGATCCGGCTGCTATCCAA GTCCGGCTCGGAGAACCGAGCGTTCGTCGGAGAGGCCGGAGCCGTGCCTCTGCTCGTGCC CCTGCTCTACTCCGAGGATGCAGGGCTCCAGCTCAACGCCGTCACGGCGCTGCTTAATCT CTCCATCCTCGAGGCCAACAAGAAGCGCATCATGCACGCCGACGGCGCCGTCGAGGCGGT CGCCCATATCATGAGCTCCGGCGCGACGTGGCGCGCCAAGGAGAACGCCGCCGCCGCCGT GCTCAGCTTGGCGTCCGTGCATTCCTACCGCCGCAGGCTCGGCAGGAACCAATCCGTCGT GGAGAAATTAGTGCATCTCGTGCGCACCGGCCCGACGAGCACAAAGAAGGACGCATTGGC CGCGCTGCTGACGCTGGCCGGCGAGAGGGAGAACGTCGGCAAGCTCGTTGACGCAGGCGT CGCCGAGGTGGCGCTGTCAGCGATTAGCAAGGAGGAGACCGCCGCGGCGGTGCTCGCCGC GCTGGCCAAGCGCGGCGGTGCGGAGGCGATCGTCAACATCGACGGCGCCGTGGCGCGTCT CGTGGCGGAAATGAGGCGCGGCACGGACTGGGCCAGGGAGAACGCCACGGCGGCGCTCGT GCTGCTCTGCCGGCGCCTGGGCGCGCCGGCGGTGACCCAGGTCATGGCCGTGCCCGGCGT GGAATGGGCGATCTGGGAGCTGATGAGCATCGGCACGGAGCGCGCCCGGCGGAAGGCCGC CTCGCTCGGCCGGATATGCCGGCGGTGGGCAGCCGCCTCCGCCGCCGACGGGGAGCGAGG CGGCGGTTGCCCCGTTGCCACCGTGGTGCCCCCTGCCATGATGGCTTCGTGAAAACCAAT CACAACTTGCCTCGTAGGATAAGTTCAGAAACATAATTTTTCCCCCCTTCTTGCTGTACA GAGTCTTTTTTAGGCTGTCAAGATTCTTTGCTCCGAGAGATAATGGTGAGTGTTTGATCA ACTGTGCATACGAGCTTCAGTCCAATGTAATCCCCTCCAATTCCAACTCAAATTGCGCCC TTTCTTTTCT