Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0823400-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:35156414:35159205:1 gene:Os01g0823400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os01t0823400-01)
Sequence

ATGACGGCGACGTCCAGGGCGCCGCGGCGGCCCCGCGTCCGCGCCCCCGCGCGCGCGCCG
CCGCCGACCCCGATCCGGACGGCGCGCGGCGCGCGCTCCGCGGCGGCCGACGAGCTCGTC
CTCGCCGAGTTCCTCGAGGCCTCCCTCCGCGTCCCGGACCTCGCCCTGCCGCCCAAGATG
AGCAGCAGGCGCTCGTTCCGCTACCCCGCGCCGCCCCCGACCCCGGACGTCCTCGCGGGG
GCCCTCCTGTCGGGCCCCGACCCGGACGCCGCGCGGACGGCTGTCGGCGCCGCCGCGGAG
TCCGGCGCGTTCCGCGTGGGCGGCGCGGTCGATGCCGGCGAGGTGCGCGCGGCCGTGGAG
GCGGCGGAGGCGGTGTTCCGGGCGCCCGAGGAGGTGAAGCGGGAGCTCGGGAGGTGGTTC
CGGAGGAGGGATCGGGTGGCCGGTGAGGAGTTCTACTGGTTCCGGCCGGCGACGGCGAGC
TCGGATGACGACCGGGTGCTCGACGCGGCGCTGCCCGGCTCGACGTACCAGGTGTTGAGG
GAAAAGATGGAGATTGTTGCATCCAAAATGGAGGATCTTGCACAATGCGTTATGAGAGTT
CTATCTGATAACGCCAGGAATCCTGAAGACTCTGCTCTGTCTACAGGGGCCGCGTCAATA
CTATGTCTGACACTATATAACTGTAACAAGTTGAAAACTCATTGGAGTGAGTTTGGCAGC
ACCAATCCTCCAAACTCGTACGCTTTGAGCATCCACCTCTCTGGACGAGACCAGGAAATT
TGTCTGCGGAATCAGAGCGGGTCAACTTTCTTCAGTTTGCCGGCAGGCTCTATGCTTGTT
ACAATCGGCAAGCAGATTCAGGAATGGTCCAATGGGGAGTTCAAGAATGCTGTTGGTGAG
ATACTATTTGAGCTGACTGATGAACCAAACCCGTTCATTTCCCTGGAACTCTTGTACTCA
CCGGGTCACCTGCGTCTTCCTGATGTTGGTCGACACGCAAGATGCATTGACCATCCCAAG
ACTGTTTCTTTCAGGGACCAGATTTTGGTTGCTCTGGTTCTGCTCGTTTTCTTCTACCTC
TTCTGGAGATAA

Peptide Sequence

PEP ID

Os01t0823400-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:35156414:35159205:1 gene:Os01g0823400 transcript:Os01t0823400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os01t0823400-01)
Sequence

MTATSRAPRRPRVRAPARAPPPTPIRTARGARSAAADELVLAEFLEASLRVPDLALPPKM
SSRRSFRYPAPPPTPDVLAGALLSGPDPDAARTAVGAAAESGAFRVGGAVDAGEVRAAVE
AAEAVFRAPEEVKRELGRWFRRRDRVAGEEFYWFRPATASSDDDRVLDAALPGSTYQVLR
EKMEIVASKMEDLAQCVMRVLSDNARNPEDSALSTGAASILCLTLYNCNKLKTHWSEFGS
TNPPNSYALSIHLSGRDQEICLRNQSGSTFFSLPAGSMLVTIGKQIQEWSNGEFKNAVGE
ILFELTDEPNPFISLELLYSPGHLRLPDVGRHARCIDHPKTVSFRDQILVALVLLVFFYL
FWR

Transcript Sequence

Transcript ID

Os01t0823400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:35156414:35159205:1 gene:Os01g0823400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os01t0823400-01)
Sequence

GAGTTGATCTGCCGATCGGCCGGCGGCATGACGGCGACGTCCAGGGCGCCGCGGCGGCCC
CGCGTCCGCGCCCCCGCGCGCGCGCCGCCGCCGACCCCGATCCGGACGGCGCGCGGCGCG
CGCTCCGCGGCGGCCGACGAGCTCGTCCTCGCCGAGTTCCTCGAGGCCTCCCTCCGCGTC
CCGGACCTCGCCCTGCCGCCCAAGATGAGCAGCAGGCGCTCGTTCCGCTACCCCGCGCCG
CCCCCGACCCCGGACGTCCTCGCGGGGGCCCTCCTGTCGGGCCCCGACCCGGACGCCGCG
CGGACGGCTGTCGGCGCCGCCGCGGAGTCCGGCGCGTTCCGCGTGGGCGGCGCGGTCGAT
GCCGGCGAGGTGCGCGCGGCCGTGGAGGCGGCGGAGGCGGTGTTCCGGGCGCCCGAGGAG
GTGAAGCGGGAGCTCGGGAGGTGGTTCCGGAGGAGGGATCGGGTGGCCGGTGAGGAGTTC
TACTGGTTCCGGCCGGCGACGGCGAGCTCGGATGACGACCGGGTGCTCGACGCGGCGCTG
CCCGGCTCGACGTACCAGGTGTTGAGGGAAAAGATGGAGATTGTTGCATCCAAAATGGAG
GATCTTGCACAATGCGTTATGAGAGTTCTATCTGATAACGCCAGGAATCCTGAAGACTCT
GCTCTGTCTACAGGGGCCGCGTCAATACTATGTCTGACACTATATAACTGTAACAAGTTG
AAAACTCATTGGAGTGAGTTTGGCAGCACCAATCCTCCAAACTCGTACGCTTTGAGCATC
CACCTCTCTGGACGAGACCAGGAAATTTGTCTGCGGAATCAGAGCGGGTCAACTTTCTTC
AGTTTGCCGGCAGGCTCTATGCTTGTTACAATCGGCAAGCAGATTCAGGAATGGTCCAAT
GGGGAGTTCAAGAATGCTGTTGGTGAGATACTATTTGAGCTGACTGATGAACCAAACCCG
TTCATTTCCCTGGAACTCTTGTACTCACCGGGTCACCTGCGTCTTCCTGATGTTGGTCGA
CACGCAAGATGCATTGACCATCCCAAGACTGTTTCTTTCAGGGACCAGATTTTGGTTGCT
CTGGTTCTGCTCGTTTTCTTCTACCTCTTCTGGAGATAATTGTACCCAGGTTTGCTCATT
AATCATGCCCTCCTTTGTCAAGGCAACGAAGCCGTGAGGTCAAGTGTCCTAGAAGGCTTA
TTTTTACAGCTTTTCTTGGACTTAGCTTCCTGTACTTCTTCATTAATCGTGGGGGAGAGC
ACCGCACGGGTGGCGGTGATGACAGGTAGTTTGAGTTTTTGCCTCTGTGGTTTCAAATTC
AGATTTTGTTGCTGTTAAACAATACGTGATAGAGTGGATATCCAACTTGAAGAAAATGAT
ACTGGGTGGATTTTGATTTGTTGATTGAGGCTTGATTTTGCTGTTGAGGTATTGTTTGGA
GGTGAGATTTTTATTCTATTACGATGGAGGAGTTGTTTGTAAAGGTGCAAATGTTTTTAT
GCTTCACAAAAATATATTACAATATATGATATTATTGCCATGACC