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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0817100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:34776154:34780863:-1 gene:Os01g0817100 gene_biotype:protein_coding transcript_biotype:protein_coding description:TRAM, LAG1 and CLN8 homology domain containing protein. (Os01t0817100-01)
Sequence

ATGGATGGGAATTTCGGGAGCGAGGAGCGGATTCTGTGGCCGGCGTCGGTTCTTGCCGGC
ATCGCCATGTGCGCCGCGGTATATGACATAACTCAAAAGGTTAGCTCTCATTGCTTCAAG
GGTTATGACAATATAAGCCCAATGAAAAAGGTTGAATGGAATAATAGGGGTTTCTCTACA
TTCCATGCATTGGTTGCAGCTGTTGTTTCTTTTTACCTGGTTGTGATATCTGACCTCTTC
CATAGCAACATAATAATTGATAGAAACTCATGGCTATCTGATGCCATGTTTGGGGTCTCG
ATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAGGTGGA
AAGGAATATCTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGTTGAGT
GGCAAAGCACACATGTACATACTCATGGTTCTCTTTACTGAAGCCACCACTCCCTTTGTG
AACCTTAGATGGTATTTGGAGGTTGCTGGTAAGAAGACGCATAACCTTTACTTATACAAT
GGATTGGCTCTGTTTGTCGGATGGCTGGTTGCTCGGGTAATCTTGTTCATATATTTCTTC
ACTCACATGTACTTCCATTTTGATCAGGTGAAGTCCATCTTCCCCCTGGGCTTCTACAGT
ATACTGACGGTGCCACCGGCGCTGGCAGTGATGAACCTATTTTGGTTCTGGAAGATATTC
AAGGGAATGTTGAAGACCCTGTCTAAAAGGAGACAGCAAAGTGAAAACGGAAAGGCAGAG
TAG

Peptide Sequence

PEP ID

Os01t0817100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:34776154:34780863:-1 gene:Os01g0817100 transcript:Os01t0817100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:TRAM, LAG1 and CLN8 homology domain containing protein. (Os01t0817100-01)
Sequence

MDGNFGSEERILWPASVLAGIAMCAAVYDITQKVSSHCFKGYDNISPMKKVEWNNRGFST
FHALVAAVVSFYLVVISDLFHSNIIIDRNSWLSDAMFGVSIGYFLTDLVMILWYFPSLGG
KEYLLHHGLSMYAICLALLSGKAHMYILMVLFTEATTPFVNLRWYLEVAGKKTHNLYLYN
GLALFVGWLVARVILFIYFFTHMYFHFDQVKSIFPLGFYSILTVPPALAVMNLFWFWKIF
KGMLKTLSKRRQQSENGKAE

Transcript Sequence

Transcript ID

Os01t0817100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:34776154:34780863:-1 gene:Os01g0817100 gene_biotype:protein_coding transcript_biotype:protein_coding description:TRAM, LAG1 and CLN8 homology domain containing protein. (Os01t0817100-01)
Sequence

CAGGTCCAGCACGAGTGCACGCACAAGGAGTCAAGGAGGACAAATCAATCCCCCGTAGCG
CCTAGGAGATGGACCAGATGGTCGTGTACTAGTGTGCCACTCGCCTCGAGGTGTGTGTCT
CCTCCCCTTTTAAAACCCCCCAACGAAGAGGCAGGAGCAGCCGAGCAGGACGAGGAAGAA
AACCCAACCCGCGCGAAGCACAAGCACAGAAGCAAAAGCGAACGACGAGGAGAGACGCGA
CCACCGCCGCGGGTCACTCCCCATCCCAATCTCATCCAGATTGGATTTGAGCGGATAGAG
GAGGGATGGATGGGAATTTCGGGAGCGAGGAGCGGATTCTGTGGCCGGCGTCGGTTCTTG
CCGGCATCGCCATGTGCGCCGCGGTATATGACATAACTCAAAAGGTTAGCTCTCATTGCT
TCAAGGGTTATGACAATATAAGCCCAATGAAAAAGGTTGAATGGAATAATAGGGGTTTCT
CTACATTCCATGCATTGGTTGCAGCTGTTGTTTCTTTTTACCTGGTTGTGATATCTGACC
TCTTCCATAGCAACATAATAATTGATAGAAACTCATGGCTATCTGATGCCATGTTTGGGG
TCTCGATTGGTTACTTTTTGACAGATTTGGTGATGATTCTGTGGTATTTCCCCTCTTTAG
GTGGAAAGGAATATCTCCTGCATCATGGACTTTCGATGTATGCAATCTGTCTTGCTCTGT
TGAGTGGCAAAGCACACATGTACATACTCATGGTTCTCTTTACTGAAGCCACCACTCCCT
TTGTGAACCTTAGATGGTATTTGGAGGTTGCTGGTAAGAAGACGCATAACCTTTACTTAT
ACAATGGATTGGCTCTGTTTGTCGGATGGCTGGTTGCTCGGGTAATCTTGTTCATATATT
TCTTCACTCACATGTACTTCCATTTTGATCAGGTGAAGTCCATCTTCCCCCTGGGCTTCT
ACAGTATACTGACGGTGCCACCGGCGCTGGCAGTGATGAACCTATTTTGGTTCTGGAAGA
TATTCAAGGGAATGTTGAAGACCCTGTCTAAAAGGAGACAGCAAAGTGAAAACGGAAAGG
CAGAGTAGAACTTACAAGGAAGGTGGAAGGAGGTTTTGTTCACTTTTATTGTTAGTGCGT
CTAACTTTCGACAAATCAAAGTTAAACATCCTTTGTACTTACATTACATTTGGGCGTTTT
CTATTCATTAGTAGTATATCTTTTCAATTCTAATTGCCTGCGAGTGTGAGAACTTTATTG
TAGAGTAGCCTGCATACTGCAGTCACTACAATAATTCTAACCTCTCCTCTTTTTAATCGT
CCATCCAGGCAACTGTACACTATCTTATAACAGCATTGTCACTCCTCGCTTGGAGCTGCT
TACCTACAGACACACAGTAATATTGTACTATCGAACTGTCGGCAACTTGCAGCAATTTTC
GTGGACTTCCACGTGCATTTCGTGGATCGATAAGC