Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0812100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:34524498:34526528:1 gene:Os01g0812100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NHL25. (Os01t0812100-01)
Sequence

AGAAATTCCGGAACACATCGAGATCGATCGAGGAGAGAACGACGAGCGGTCTCGTCCAGC
AAGCTGTGCAAGATTGATTCGGACGCCCGCCTCGAGGAGCAGCCGATGGTGCCGCACGGC
CGCGTCCACCCGGCGGCGGCGGCGAGCAGCTCCGACTTCTCCGGCGAGATGAACCAGTCC
GCCGCCTCCTCCGACCCCTCCTCCAGCCCGCCCTACAGCTTCCACTTCGAGAAGCCCCTC
CCGCCGACGGCGGCGGCGCCGCCGCCCGCCGACGCGCGGCGGTACCAGCAGCTGCTGCCG
GCGCCGCAGCCCGGCACGTACGTGGTGCAGATGCCCAAGGACAAGGTGTTCCGCGTCCCG
CCGCCGGAGAACGCGCGCCTCTTCCAGCACTACACCCGCCGCGCCAGGCGCCGCGCCCGC
TGCTCCTGCGCCCGCGTCTGCTCGTGGCTCCTCCTCGCGCTCGTCCTCCTCGCCGCCGCG
CTCGCGGCCTCCGCCGCCGTCGTCTACCTCGTGTTCAAGCCCAGGCAGCCGGACTACACG
CTCCTGTCCCTCGCCGTGTCCGGCCTCGGCGGCATCCTCGGCAACGCCTCCTCCACCGCT
GCCCCTGCCCCCGTCTCGTTCTCGCCGGAGTTCGACGCCACCGTGCGCGCGGACAACCCG
AACGGCAAGATCGGCGTGCACTACGAGGGCGGCGGGAGCCACGTCGCCGTGTCGTACGGC
GGCGTGAGGCTCGCCGACGGCGCGTGGCCGGCGTTCTACCAGGGCCCCCGCAACGTGACG
GTGCTGGTGGCGACGGCGAAGGGGTTGGGGATACGGTTCTCGGAGCGCCTGCTCGGCGAC
ATCGCGGCGGCGGGGCGGCTCCGGTCGGTGCCGTTCGACGTGGACGTCAAGGTGCCCGTG
CGCCTGCAGGTCGGCGGCGTGAGGACGTGGGCCGTGCCGGTGAGGGTGCGGTGCGCGGTG
GTCGTGGACAGGCTCGCCGCCGACGCCAAGGTGGTGTCCAAGTCGTGCCGCGTGAAGGCG
CGGTTCCTCTTCTGGAAGGACTGA

Peptide Sequence

PEP ID

Os01t0812100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:34524498:34526528:1 gene:Os01g0812100 transcript:Os01t0812100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NHL25. (Os01t0812100-01)
Sequence

RNSGTHRDRSRRERRAVSSSKLCKIDSDARLEEQPMVPHGRVHPAAAASSSDFSGEMNQS
AASSDPSSSPPYSFHFEKPLPPTAAAPPPADARRYQQLLPAPQPGTYVVQMPKDKVFRVP
PPENARLFQHYTRRARRRARCSCARVCSWLLLALVLLAAALAASAAVVYLVFKPRQPDYT
LLSLAVSGLGGILGNASSTAAPAPVSFSPEFDATVRADNPNGKIGVHYEGGGSHVAVSYG
GVRLADGAWPAFYQGPRNVTVLVATAKGLGIRFSERLLGDIAAAGRLRSVPFDVDVKVPV
RLQVGGVRTWAVPVRVRCAVVVDRLAADAKVVSKSCRVKARFLFWKD

Transcript Sequence

Transcript ID

Os01t0812100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:34524498:34526528:1 gene:Os01g0812100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to NHL25. (Os01t0812100-01)
Sequence

CTCTCTCTCTCTCCGGCGTCTGTCCTGACCACCTCGCACGTCCGCCGTCTCCTCCTTCCT
CTCTTCGCAATCACAATCCTGAAGAAATTCCGGAACACATCGAGATCGATCGAGGAGAGA
ACGACGAGCGGTCTCGTCCAGCAAGCTGTGCAAGATTGATTCGGACGCCCGCCTCGAGGA
GCAGCCGATGGTGCCGCACGGCCGCGTCCACCCGGCGGCGGCGGCGAGCAGCTCCGACTT
CTCCGGCGAGATGAACCAGTCCGCCGCCTCCTCCGACCCCTCCTCCAGCCCGCCCTACAG
CTTCCACTTCGAGAAGCCCCTCCCGCCGACGGCGGCGGCGCCGCCGCCCGCCGACGCGCG
GCGGTACCAGCAGCTGCTGCCGGCGCCGCAGCCCGGCACGTACGTGGTGCAGATGCCCAA
GGACAAGGTGTTCCGCGTCCCGCCGCCGGAGAACGCGCGCCTCTTCCAGCACTACACCCG
CCGCGCCAGGCGCCGCGCCCGCTGCTCCTGCGCCCGCGTCTGCTCGTGGCTCCTCCTCGC
GCTCGTCCTCCTCGCCGCCGCGCTCGCGGCCTCCGCCGCCGTCGTCTACCTCGTGTTCAA
GCCCAGGCAGCCGGACTACACGCTCCTGTCCCTCGCCGTGTCCGGCCTCGGCGGCATCCT
CGGCAACGCCTCCTCCACCGCTGCCCCTGCCCCCGTCTCGTTCTCGCCGGAGTTCGACGC
CACCGTGCGCGCGGACAACCCGAACGGCAAGATCGGCGTGCACTACGAGGGCGGCGGGAG
CCACGTCGCCGTGTCGTACGGCGGCGTGAGGCTCGCCGACGGCGCGTGGCCGGCGTTCTA
CCAGGGCCCCCGCAACGTGACGGTGCTGGTGGCGACGGCGAAGGGGTTGGGGATACGGTT
CTCGGAGCGCCTGCTCGGCGACATCGCGGCGGCGGGGCGGCTCCGGTCGGTGCCGTTCGA
CGTGGACGTCAAGGTGCCCGTGCGCCTGCAGGTCGGCGGCGTGAGGACGTGGGCCGTGCC
GGTGAGGGTGCGGTGCGCGGTGGTCGTGGACAGGCTCGCCGCCGACGCCAAGGTGGTGTC
CAAGTCGTGCCGCGTGAAGGCGCGGTTCCTCTTCTGGAAGGACTGATGAGGAAGCAAGAA
CAGTGGAGTAATCGGTTGATTAAATTAGGAGAAGAAGAACATGCAGTTTTTTGGCACCAA
TGGATTCTTGCTGTGCTTTTTCAATGATGTTTTACTGTAATCATCATCTGTTCGTGGGTT
TGATAGAGTAATGTTGATCATCCTAATGCCAAAATCGTGTTGTAGTTGTGATGTTCATGA
GTTGCACCTATGTGTTCTTTACAAATGAGAAGAAAAAAGTTTTTGGC